Clone LD19190 Report

Search the DGRC for LD19190

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:191
Well:90
Vector:pBS SK-
Associated Gene/TranscriptCG11436-RA
Protein status:LD19190.pep: gold
Preliminary Size:2067
Sequenced Size:1987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11436 2001-01-01 Release 2 assignment
CG11436 2001-10-10 Blastp of sequenced clone
CG11436 2003-01-01 Sim4 clustering to Release 3
CG11436 2008-04-29 Release 5.5 accounting
CG11436 2008-08-15 Release 5.9 accounting
CG11436 2008-12-18 5.12 accounting

Clone Sequence Records

LD19190.complete Sequence

1987 bp (1987 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061262

> LD19190.complete
ATTACCGGATCCTTGTCGTCCTCCTGGTTTTGCAATCCTACAAGATGCGC
CTGTGCCCGCTGGCGTTCGCCGTGCTGCTTGGCCTTTTTCACCTGATCCA
GGCCTGCAATCATTGGGTTCTTCGCGAGGAGCAGATCGTGCCCAAACTGG
ACTCTCCATTCCACATGCGTGAACCCCACAATCTGGCGGCATTTCTCAAG
CAGATCAGGTACAGTGAGTATGTGGAGCGCTCCTATCTGGATCTGCTGCG
CAAGCGGGAACAGATTGTGGAGCACCTACGATTTTCGATGCGTTTCGGTG
AGGATCTGGCCGAGCAGGCCAAGTGCGCCATGGACTACTACATGCTGGAG
AAGCGAATGTCTTACCTGAAAATTACGCCAGAGCAGTTGAAAAGGATTAA
TCTTCCGGACCAGAGGCAATTGCACATACAGAAGAGCGCATCCTCGATGG
GAATGGAGCCGATATGCAGCGATTACCATCGATTAAGCGTGGGTCCAGCC
ACCTATGATCATCTGGAGAGTTTTCGGCCCGAGGTCCTGGCCGCTGCCTT
TCTGGAGCGCGAGCATGACACCAATGTGGGCATGGCCACCGTGGAATTGA
CCCGGCGATTTGCGGTGGACGGATTGCAGCATCATCCGGCCTCCTGGAAG
TTCCACACCCTAAGCTCGTACTATTGGCGCATGCGAGGAAATGCCCGGGA
AGCCCTGCCCTGTGCCAGATTGGCTGCCTTGCTGGCTCCGCCGATCTTTA
AGGATATACCCCTGCTGAGTCTGGGTACCATACTCTTTCGAATGGGTCGA
CTGGCCGATGCCGATCTGATATTGACCGCTGCGGTGGAACATGCTCCTAA
TGTGGCCGAGAATCATGTGGTCCTGGCCTCTGCACTGGCCATGAAACACG
ACTTTAATCGATCACTGCAGCACTTCGACGAAGCCGAGCGACTGGATCCC
AGCACATTGCCGAGAACACAGCAGGTGCGAAACTTTATAAGTTGCCTAGA
GAACCTAACGAAGAAAACCTCCAAGATGTATAGCTATGTGAAGTACATGC
AGAACGAGGTGAAGGAGTTCAAGAAGCTGAAGCATCACATCTCTCAGAAT
CACGAGAGATTGATCCAACAGCAGCTGCCATTGGGAGCGAGACGTCTGCT
TGGCCTGGACGCCAAAACCAACAACGATGATCTCCATCGAAGGGGTCAAT
ACTGCAGCACGAGGACGCCGAATGGTTCAGATGAACCGGTGTTGTTTTGT
GACTTCTATTCGGACATGCAAATGCGATTGGAGAGCAAGGATGTGGACAT
TGATGTGCTGGAACGGGATCTAAAGGCCAATACGGATGCGGTCATTCGCC
AGGTGTCCACCGAAATCCGGAAACAGTTCAATTTGGAGCAGCTTAAGGCG
GCCAAGGCCCAAATGCCTGCGAAGGCGACAAAGGCTACATAGTAATGATT
GCCATTACAAACAGATGGACTGGCACATTCCCTTCACAAAGCAACCAAAT
ATTTTTGGTCACAAAATAGCTTGTACGATTAATCTGTTCTTAATTAGTAT
TTAGGTATGTGTGCAAGAGACGTGTGCGAGTGTGTGTGTGTGTGTGTATA
GGATAAGTTTTCAGGTATAGTTTTATCAGGCTTTATACACGGAAATGTTC
GAAAGGAGGAGGTTCTTTCGATGCATAATACAGCATCGTTATGTCACTTT
AATTAATAATATCTTTTAATGAATATTTAAACAACGACTTTTTCACATTC
GATAAGAAATAAGCTTTGAATTGTATTCAACTAAGAACTCTTTTGTTTAT
TTCTGTTTTCAGACAGCTTATTTTTATATTTGTTATATTATGTTTTATAT
TTGTCCAAAACCTCCTACCTCGAATTTCCCAAAAAAATATCATTAAGATC
GCGTATTTATATTTACCACTAGTTTTACATTCAGTTATGTTATCTTAATG
CAAAAAAAAAAGGAAATCTAAAAAAAAAAAAAAAAAA

LD19190.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11436-RA 1998 CG11436-RA 30..1998 1..1969 9845 100 Plus
CG15912-RA 888 CG15912-RA 807..888 1976..1895 395 98.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4442779..4444750 1969..1 9640 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4549876..4551851 1976..1 9865 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4557974..4559949 1976..1 9865 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 16:25:44 has no hits.

LD19190.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:26:47 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4442779..4444750 1..1969 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:48 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 1..1398 45..1442 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:20 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 1..1398 45..1442 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:28 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 1..1398 45..1442 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:24 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 1..1398 45..1442 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:27:21 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 1..1398 45..1442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:59 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 30..1996 1..1967 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:20 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 30..1998 1..1969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:28 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 28..1996 1..1969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:24 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 30..1996 1..1967 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:27:21 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
CG11436-RA 28..1996 1..1969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:47 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549883..4551851 1..1969 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:47 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549883..4551851 1..1969 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:47 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
X 4549883..4551851 1..1969 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:28 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4443916..4445884 1..1969 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:31 Download gff for LD19190.complete
Subject Subject Range Query Range Percent Splice Strand
X 4557981..4559949 1..1969 100   Minus

LD19190.hyp Sequence

Translation from 2 to 1441

> LD19190.hyp
YRILVVLLVLQSYKMRLCPLAFAVLLGLFHLIQACNHWVLREEQIVPKLD
SPFHMREPHNLAAFLKQIRYSEYVERSYLDLLRKREQIVEHLRFSMRFGE
DLAEQAKCAMDYYMLEKRMSYLKITPEQLKRINLPDQRQLHIQKSASSMG
MEPICSDYHRLSVGPATYDHLESFRPEVLAAAFLEREHDTNVGMATVELT
RRFAVDGLQHHPASWKFHTLSSYYWRMRGNAREALPCARLAALLAPPIFK
DIPLLSLGTILFRMGRLADADLILTAAVEHAPNVAENHVVLASALAMKHD
FNRSLQHFDEAERLDPSTLPRTQQVRNFISCLENLTKKTSKMYSYVKYMQ
NEVKEFKKLKHHISQNHERLIQQQLPLGARRLLGLDAKTNNDDLHRRGQY
CSTRTPNGSDEPVLFCDFYSDMQMRLESKDVDIDVLERDLKANTDAVIRQ
VSTEIRKQFNLEQLKAAKAQMPAKATKAT*

LD19190.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11436-PA 465 CG11436-PA 1..465 15..479 2414 100 Plus

LD19190.pep Sequence

Translation from 44 to 1441

> LD19190.pep
MRLCPLAFAVLLGLFHLIQACNHWVLREEQIVPKLDSPFHMREPHNLAAF
LKQIRYSEYVERSYLDLLRKREQIVEHLRFSMRFGEDLAEQAKCAMDYYM
LEKRMSYLKITPEQLKRINLPDQRQLHIQKSASSMGMEPICSDYHRLSVG
PATYDHLESFRPEVLAAAFLEREHDTNVGMATVELTRRFAVDGLQHHPAS
WKFHTLSSYYWRMRGNAREALPCARLAALLAPPIFKDIPLLSLGTILFRM
GRLADADLILTAAVEHAPNVAENHVVLASALAMKHDFNRSLQHFDEAERL
DPSTLPRTQQVRNFISCLENLTKKTSKMYSYVKYMQNEVKEFKKLKHHIS
QNHERLIQQQLPLGARRLLGLDAKTNNDDLHRRGQYCSTRTPNGSDEPVL
FCDFYSDMQMRLESKDVDIDVLERDLKANTDAVIRQVSTEIRKQFNLEQL
KAAKAQMPAKATKAT*

LD19190.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19531-PA 462 GF19531-PA 1..462 1..465 2260 89.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18535-PA 465 GG18535-PA 1..465 1..465 2472 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17813-PA 463 GH17813-PA 1..463 1..465 2057 82.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11436-PA 465 CG11436-PA 1..465 1..465 2414 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16423-PA 467 GI16423-PA 1..467 1..465 2029 81.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20274-PA 469 GL20274-PA 1..469 1..465 2186 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11003-PA 469 GA11003-PA 1..469 1..465 2186 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12685-PA 463 GM12685-PA 3..463 5..465 2465 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16292-PA 391 GD16292-PA 20..391 95..465 1852 94.4 Plus
Dsim\GD16292-PA 391 GD16292-PA 1..42 1..42 235 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15826-PA 467 GJ15826-PA 1..467 1..465 2042 81.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25005-PA 463 GK25005-PA 1..463 1..465 2102 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16851-PA 463 GE16851-PA 1..463 1..465 2435 97.2 Plus