BDGP Sequence Production Resources |
Search the DGRC for LD19266
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 192 |
Well: | 66 |
Vector: | pBS SK- |
Associated Gene/Transcript | ced-6-RA |
Protein status: | LD19266.pep: gold |
Preliminary Size: | 2366 |
Sequenced Size: | 2331 |
Gene | Date | Evidence |
---|---|---|
CG11804 | 2002-06-06 | Blastp of sequenced clone |
CG11804 | 2003-01-01 | Sim4 clustering to Release 3 |
ced-6 | 2008-04-29 | Release 5.5 accounting |
ced-6 | 2008-08-15 | Release 5.9 accounting |
ced-6 | 2008-12-18 | 5.12 accounting |
2331 bp (2331 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119596
> LD19266.complete TTGGCGCCGTGGCGCTCCAGAAATAGCGGTGAATTGCTGTGCCTGTGACT GTGACTGCTGCTCCTACTCCTACTCCTCCTTCAGCTTGTAACGCTCCCTT AAACGCTTAAAAACGGCGCCGACCACAACAATGCCTTATCAGCCAGCCAA CAGCGGCGGGACGTCTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGC TAAAGTTCTGGAACAAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAG GACAAGGACGCCGCCGACGGGGGCAACAACACCAGTGGCGGCGGCACTGG CAGCAACAGCAACGGGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCA ACTGGCTGCACACGCCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTA GTCAAGTTCTTTGGTAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGT GGTCAAGGAGGCCATTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGG CGGAAACGGGCACCCAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGC ATCAAGGGCGTGGCAATCCAGGAGCCGCGCACCCACAAGATCCTCCACCA GTTTCCGCTGTACAACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGA AGTTCTTCAGCTTCATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGAT CCGACGTCAAATGGCCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGT CGAGGAGAGCCACGAGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGG ATATCACGCTGACCATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTAC ATGGATAGCACCGAAAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAA TCATCTGCAACAAACCGTAAACGTTTACAAGGAGCGACTGCGAGAAGTTT CCGCCAAATTGCCAAAGGCCGAGCTAGATGCCCTGCTCTTCAATCTGGGA ATCAAGGATATCCTGGAAGCGCCCACCACAGAACCCCAGAATGGAATCGA GGTGGCCAGCGAAGCCCTGAGCAACGGCAAGCTGGATGATGATAAGCTGC TAATCGACACCAATTCCACCACAGCGTCGACCCACTCAGCGTCGCCCAGC TCGTTCTTGCCGATTGTCCCGCCGAGGAACAATTTATCCAGCCAGATCAG CATCGGCGGCAAGAGCAATAGCCAAAAGATGGACGAGCTGCTGCTGAACT CGGATTCCGATAGTGATTTCGATCCGCGAGCGGATGAGACGCAGGAGATC GGCGGCACTGGTCGCAGTGCGATAAGCAATATGTTCGGCTTCGAGCCGGC CAATAGCTTTGGTCAGCATTTGTTTTCCAACAACAATGATCACAAGCTGC AAAATAATAACAGCAGCTTACTGATAACGAGCAATAACAACAGCATTAAC AGCAGTGGCTTCTCCAGCGAGCTGAACATAACGCCGCCATTGTTGGCCCC ACCGCCAAAGATTGCCGCTCCCAGGCGCCTAAACTCGGTGACAACGGGCA ACGGCCTGAATGGCAACACAGATCTATTCGGTTCGGATCCTTTCGAATTG AACAATGGACCGAACATTTTCAAGCAAAATCAGCTTAACCTTGACGACTT CTCGCTGGAGAGTTTGGATCCCCTGCGAAAGTAGAGCGGTGCTACCAAGG CCATTTTCACACTTCAACATGATTGAAACTTTATGACATCCCAAAAGTTT GTCTCATCGTTTATCCTTCTATGTTTCTCCGATTCGCATGCATTCCAATC CAATTGCAATTCGATTTATTTAATGTGTATTATTGTTTATATATTGTATT GTATTTATTATCATTGATTTTTTGTCGATTTTATATTGCATATTATGAAT TCTACTATTATTATAATTATAAATATGATAATAATCTGAGGTCAAGATCA AAAGAACACAAGAAACAACCGCAATGCACCTTGTTTAAACGTATCAATTT GTTGCTGTAGTTGAATAGATTAATTGATGGTCGAGTAAAGCGAATGAAAA AATGTTAACAAGTGATAAATGTGAAAATTGCTAAACAATGCTAACTGAAT GTGAGAATTTTGTATAAAATAATTATAAAGACATAACCAGAAGCAAATGA ATCGATTACTGTATAGAGCCGAAATACGAGGAGAATTAAAGCAAAATGAA CAATATTTAATGTTATTGATGCAATATAGAGAAATATTATTATTACTATT ATTATTGTGTACGTAAAGAATAAAATGTAGTGCCTAAAGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5322186..5322852 | 2288..1622 | 3335 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323877..5324315 | 843..405 | 2195 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323101..5323509 | 1493..1085 | 2045 | 100 | Minus |
chr2R | 21145070 | chr2R | 5324935..5325248 | 406..93 | 1570 | 100 | Minus |
chr2R | 21145070 | chr2R | 5323566..5323811 | 1085..840 | 1230 | 100 | Minus |
chr2R | 21145070 | chr2R | 5322909..5323039 | 1624..1494 | 655 | 100 | Minus |
chr2R | 21145070 | chr2R | 5328217..5328309 | 93..1 | 465 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9434665..9435337 | 2294..1622 | 3350 | 99.9 | Minus |
2R | 25286936 | 2R | 9436362..9436800 | 843..405 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 9435586..9435994 | 1493..1085 | 2045 | 100 | Minus |
2R | 25286936 | 2R | 9437420..9437733 | 406..93 | 1570 | 100 | Minus |
2R | 25286936 | 2R | 9436051..9436296 | 1085..840 | 1230 | 100 | Minus |
2R | 25286936 | 2R | 9435394..9435524 | 1624..1494 | 655 | 100 | Minus |
2R | 25286936 | 2R | 9440702..9440794 | 93..1 | 465 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9435864..9436536 | 2294..1622 | 3350 | 99.8 | Minus |
2R | 25260384 | 2R | 9437561..9437999 | 843..405 | 2195 | 100 | Minus |
2R | 25260384 | 2R | 9436785..9437193 | 1493..1085 | 2045 | 100 | Minus |
2R | 25260384 | 2R | 9438619..9438932 | 406..93 | 1570 | 100 | Minus |
2R | 25260384 | 2R | 9437250..9437495 | 1085..840 | 1230 | 100 | Minus |
2R | 25260384 | 2R | 9436593..9436723 | 1624..1494 | 655 | 100 | Minus |
2R | 25260384 | 2R | 9441901..9441993 | 93..1 | 465 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 212..313 | 184 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 208..388 | 174 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 230..352 | 158 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 204..328 | 145 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2432 | 221..351 | 136 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6818 | 274..382 | 123 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 230..352 | 116 | 57.1 | Plus |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 2559..2597 | 1898..1936 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5322184..5322849 | 1625..2290 | 95 | <- | Minus |
chr2R | 5322909..5323039 | 1494..1624 | 100 | <- | Minus |
chr2R | 5323101..5323508 | 1086..1493 | 100 | <- | Minus |
chr2R | 5323566..5323807 | 844..1085 | 100 | <- | Minus |
chr2R | 5323877..5324313 | 407..843 | 100 | <- | Minus |
chr2R | 5324935..5325025 | 316..406 | 100 | == | Minus |
chr2R | 5325126..5325247 | 94..215 | 100 | <- | Minus |
chr2R | 5328217..5328309 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 1..1554 | 131..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 1..1554 | 131..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 11..1602 | 93..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 1..1554 | 131..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RD | 11..1602 | 93..1684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 2..2291 | 1..2290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 2..2291 | 1..2290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 93..2382 | 1..2290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 2..2291 | 1..2290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ced-6-RA | 93..2382 | 1..2290 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1625..2290 | 99 | <- | Minus |
2R | 9435394..9435524 | 1494..1624 | 100 | <- | Minus |
2R | 9435586..9435993 | 1086..1493 | 100 | <- | Minus |
2R | 9436051..9436292 | 844..1085 | 100 | <- | Minus |
2R | 9436362..9436798 | 407..843 | 100 | <- | Minus |
2R | 9437420..9437732 | 94..406 | 100 | <- | Minus |
2R | 9440702..9440794 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1625..2290 | 99 | <- | Minus |
2R | 9435394..9435524 | 1494..1624 | 100 | <- | Minus |
2R | 9435586..9435993 | 1086..1493 | 100 | <- | Minus |
2R | 9436051..9436292 | 844..1085 | 100 | <- | Minus |
2R | 9436362..9436798 | 407..843 | 100 | <- | Minus |
2R | 9437420..9437732 | 94..406 | 100 | <- | Minus |
2R | 9440702..9440794 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9434669..9435334 | 1625..2290 | 99 | <- | Minus |
2R | 9435394..9435524 | 1494..1624 | 100 | <- | Minus |
2R | 9435586..9435993 | 1086..1493 | 100 | <- | Minus |
2R | 9436051..9436292 | 844..1085 | 100 | <- | Minus |
2R | 9436362..9436798 | 407..843 | 100 | <- | Minus |
2R | 9437420..9437732 | 94..406 | 100 | <- | Minus |
2R | 9440702..9440794 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5322174..5322839 | 1625..2290 | 99 | <- | Minus |
arm_2R | 5322899..5323029 | 1494..1624 | 100 | <- | Minus |
arm_2R | 5323091..5323498 | 1086..1493 | 100 | <- | Minus |
arm_2R | 5323556..5323797 | 844..1085 | 100 | <- | Minus |
arm_2R | 5323867..5324303 | 407..843 | 100 | <- | Minus |
arm_2R | 5324925..5325237 | 94..406 | 100 | <- | Minus |
arm_2R | 5328207..5328299 | 1..93 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9437561..9437997 | 407..843 | 100 | <- | Minus |
2R | 9435868..9436533 | 1625..2290 | 99 | <- | Minus |
2R | 9436593..9436723 | 1494..1624 | 100 | <- | Minus |
2R | 9436785..9437192 | 1086..1493 | 100 | <- | Minus |
2R | 9437250..9437491 | 844..1085 | 100 | <- | Minus |
2R | 9438619..9438931 | 94..406 | 100 | <- | Minus |
2R | 9441901..9441993 | 1..93 | 100 | Minus |
Translation from 130 to 1683
> LD19266.pep MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN QLNLDDFSLESLDPLRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12503-PA | 520 | GF12503-PA | 1..520 | 1..517 | 1952 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25283-PA | 518 | GG25283-PA | 1..518 | 1..517 | 2639 | 97.1 | Plus |
Dere\GG12437-PA | 1327 | GG12437-PA | 1165..1299 | 75..238 | 158 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21964-PA | 514 | GH21964-PA | 1..514 | 1..517 | 1651 | 69.5 | Plus |
Dgri\GH20822-PA | 1338 | GH20822-PA | 1170..1308 | 75..238 | 165 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ced-6-PD | 533 | CG11804-PD | 17..533 | 1..517 | 2661 | 100 | Plus |
ced-6-PA | 517 | CG11804-PA | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PC | 517 | CG11804-PC | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PB | 517 | CG11804-PB | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PF | 514 | CG11804-PF | 1..514 | 1..517 | 2631 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19669-PA | 534 | GI19669-PA | 1..534 | 1..517 | 1621 | 72.6 | Plus |
Dmoj\GI10712-PA | 1357 | GI10712-PA | 1186..1324 | 75..238 | 161 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17132-PA | 330 | GL17132-PA | 1..329 | 1..324 | 1406 | 83.9 | Plus |
Dper\GL13852-PA | 1345 | GL13852-PA | 1183..1317 | 75..238 | 157 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11210-PA | 537 | GA11210-PA | 1..537 | 1..517 | 2135 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20601-PA | 517 | GM20601-PA | 1..517 | 1..517 | 2700 | 99.2 | Plus |
Dsec\GM23569-PA | 1328 | GM23569-PA | 1166..1300 | 75..238 | 158 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10073-PA | 398 | GD10073-PA | 3..398 | 122..517 | 2041 | 98.2 | Plus |
Dsim\GD15263-PA | 105 | GD15263-PA | 1..93 | 1..93 | 483 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15034-PA | 536 | GJ15034-PA | 1..536 | 1..517 | 1856 | 74.5 | Plus |
Dvir\GJ23127-PA | 270 | GJ23127-PA | 102..240 | 75..238 | 154 | 25.3 | Plus |
Translation from 130 to 1683
> LD19266.hyp MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN QLNLDDFSLESLDPLRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ced-6-PD | 533 | CG11804-PD | 17..533 | 1..517 | 2661 | 100 | Plus |
ced-6-PA | 517 | CG11804-PA | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PC | 517 | CG11804-PC | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PB | 517 | CG11804-PB | 1..517 | 1..517 | 2661 | 100 | Plus |
ced-6-PF | 514 | CG11804-PF | 1..514 | 1..517 | 2631 | 99.4 | Plus |