Clone LD19266 Report

Search the DGRC for LD19266

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:192
Well:66
Vector:pBS SK-
Associated Gene/Transcriptced-6-RA
Protein status:LD19266.pep: gold
Preliminary Size:2366
Sequenced Size:2331

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11804 2002-06-06 Blastp of sequenced clone
CG11804 2003-01-01 Sim4 clustering to Release 3
ced-6 2008-04-29 Release 5.5 accounting
ced-6 2008-08-15 Release 5.9 accounting
ced-6 2008-12-18 5.12 accounting

Clone Sequence Records

LD19266.complete Sequence

2331 bp (2331 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119596

> LD19266.complete
TTGGCGCCGTGGCGCTCCAGAAATAGCGGTGAATTGCTGTGCCTGTGACT
GTGACTGCTGCTCCTACTCCTACTCCTCCTTCAGCTTGTAACGCTCCCTT
AAACGCTTAAAAACGGCGCCGACCACAACAATGCCTTATCAGCCAGCCAA
CAGCGGCGGGACGTCTGGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGC
TAAAGTTCTGGAACAAGCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAG
GACAAGGACGCCGCCGACGGGGGCAACAACACCAGTGGCGGCGGCACTGG
CAGCAACAGCAACGGGGATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCA
ACTGGCTGCACACGCCGGAGCAGCTCATCAGCGGACACGCGGTCTATCTA
GTCAAGTTCTTTGGTAACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGT
GGTCAAGGAGGCCATTCGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGG
CGGAAACGGGCACCCAGGAGAAGTTCAAGAAGCTTGAGATCACCATTAGC
ATCAAGGGCGTGGCAATCCAGGAGCCGCGCACCCACAAGATCCTCCACCA
GTTTCCGCTGTACAACATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGA
AGTTCTTCAGCTTCATTGCCAAGACGGTGAAGACGCAGGACGGCAGCGAT
CCGACGTCAAATGGCCATGCAAACGGAAATGGCGATGGTAGTGCCAAAGT
CGAGGAGAGCCACGAGTGCTTTGTCTTCATTTCAAACAAATTGGCCTCGG
ATATCACGCTGACCATTGGCCAGGCCTTCGATTTGGCCTACAGAAAGTAC
ATGGATAGCACCGAAAAGACGAATCTGAGCAAGGCGCAGCAACAGATTAA
TCATCTGCAACAAACCGTAAACGTTTACAAGGAGCGACTGCGAGAAGTTT
CCGCCAAATTGCCAAAGGCCGAGCTAGATGCCCTGCTCTTCAATCTGGGA
ATCAAGGATATCCTGGAAGCGCCCACCACAGAACCCCAGAATGGAATCGA
GGTGGCCAGCGAAGCCCTGAGCAACGGCAAGCTGGATGATGATAAGCTGC
TAATCGACACCAATTCCACCACAGCGTCGACCCACTCAGCGTCGCCCAGC
TCGTTCTTGCCGATTGTCCCGCCGAGGAACAATTTATCCAGCCAGATCAG
CATCGGCGGCAAGAGCAATAGCCAAAAGATGGACGAGCTGCTGCTGAACT
CGGATTCCGATAGTGATTTCGATCCGCGAGCGGATGAGACGCAGGAGATC
GGCGGCACTGGTCGCAGTGCGATAAGCAATATGTTCGGCTTCGAGCCGGC
CAATAGCTTTGGTCAGCATTTGTTTTCCAACAACAATGATCACAAGCTGC
AAAATAATAACAGCAGCTTACTGATAACGAGCAATAACAACAGCATTAAC
AGCAGTGGCTTCTCCAGCGAGCTGAACATAACGCCGCCATTGTTGGCCCC
ACCGCCAAAGATTGCCGCTCCCAGGCGCCTAAACTCGGTGACAACGGGCA
ACGGCCTGAATGGCAACACAGATCTATTCGGTTCGGATCCTTTCGAATTG
AACAATGGACCGAACATTTTCAAGCAAAATCAGCTTAACCTTGACGACTT
CTCGCTGGAGAGTTTGGATCCCCTGCGAAAGTAGAGCGGTGCTACCAAGG
CCATTTTCACACTTCAACATGATTGAAACTTTATGACATCCCAAAAGTTT
GTCTCATCGTTTATCCTTCTATGTTTCTCCGATTCGCATGCATTCCAATC
CAATTGCAATTCGATTTATTTAATGTGTATTATTGTTTATATATTGTATT
GTATTTATTATCATTGATTTTTTGTCGATTTTATATTGCATATTATGAAT
TCTACTATTATTATAATTATAAATATGATAATAATCTGAGGTCAAGATCA
AAAGAACACAAGAAACAACCGCAATGCACCTTGTTTAAACGTATCAATTT
GTTGCTGTAGTTGAATAGATTAATTGATGGTCGAGTAAAGCGAATGAAAA
AATGTTAACAAGTGATAAATGTGAAAATTGCTAAACAATGCTAACTGAAT
GTGAGAATTTTGTATAAAATAATTATAAAGACATAACCAGAAGCAAATGA
ATCGATTACTGTATAGAGCCGAAATACGAGGAGAATTAAAGCAAAATGAA
CAATATTTAATGTTATTGATGCAATATAGAGAAATATTATTATTACTATT
ATTATTGTGTACGTAAAGAATAAAATGTAGTGCCTAAAGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD19266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-RA 2351 ced-6-RA 62..2349 1..2288 11440 100 Plus
ced-6.a 2253 ced-6.a 52..2253 92..2293 10995 99.9 Plus
ced-6.b 2464 ced-6.b 264..2464 93..2293 10990 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5322186..5322852 2288..1622 3335 100 Minus
chr2R 21145070 chr2R 5323877..5324315 843..405 2195 100 Minus
chr2R 21145070 chr2R 5323101..5323509 1493..1085 2045 100 Minus
chr2R 21145070 chr2R 5324935..5325248 406..93 1570 100 Minus
chr2R 21145070 chr2R 5323566..5323811 1085..840 1230 100 Minus
chr2R 21145070 chr2R 5322909..5323039 1624..1494 655 100 Minus
chr2R 21145070 chr2R 5328217..5328309 93..1 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9434665..9435337 2294..1622 3350 99.9 Minus
2R 25286936 2R 9436362..9436800 843..405 2195 100 Minus
2R 25286936 2R 9435586..9435994 1493..1085 2045 100 Minus
2R 25286936 2R 9437420..9437733 406..93 1570 100 Minus
2R 25286936 2R 9436051..9436296 1085..840 1230 100 Minus
2R 25286936 2R 9435394..9435524 1624..1494 655 100 Minus
2R 25286936 2R 9440702..9440794 93..1 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9435864..9436536 2294..1622 3350 99.8 Minus
2R 25260384 2R 9437561..9437999 843..405 2195 100 Minus
2R 25260384 2R 9436785..9437193 1493..1085 2045 100 Minus
2R 25260384 2R 9438619..9438932 406..93 1570 100 Minus
2R 25260384 2R 9437250..9437495 1085..840 1230 100 Minus
2R 25260384 2R 9436593..9436723 1624..1494 655 100 Minus
2R 25260384 2R 9441901..9441993 93..1 465 100 Minus
Blast to na_te.dros performed 2019-03-16 03:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6789..6893 212..313 184 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6905 208..388 174 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2427 230..352 158 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1471..1598 204..328 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2432 221..351 136 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6818 274..382 123 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1024..1148 230..352 116 57.1 Plus
transib4 2656 transib4 TRANSIB4 2656bp 2559..2597 1898..1936 114 76.9 Plus

LD19266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:55:45 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5322184..5322849 1625..2290 95 <- Minus
chr2R 5322909..5323039 1494..1624 100 <- Minus
chr2R 5323101..5323508 1086..1493 100 <- Minus
chr2R 5323566..5323807 844..1085 100 <- Minus
chr2R 5323877..5324313 407..843 100 <- Minus
chr2R 5324935..5325025 316..406 100 == Minus
chr2R 5325126..5325247 94..215 100 <- Minus
chr2R 5328217..5328309 1..93 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:53 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 131..1684 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:47 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 131..1684 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:54 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 11..1602 93..1684 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:56 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 1..1554 131..1684 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:34 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RD 11..1602 93..1684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:37 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 2..2291 1..2290 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:47 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 2..2291 1..2290 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:54 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 93..2382 1..2290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:56 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 2..2291 1..2290 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:34 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
ced-6-RA 93..2382 1..2290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:45 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1625..2290 99 <- Minus
2R 9435394..9435524 1494..1624 100 <- Minus
2R 9435586..9435993 1086..1493 100 <- Minus
2R 9436051..9436292 844..1085 100 <- Minus
2R 9436362..9436798 407..843 100 <- Minus
2R 9437420..9437732 94..406 100 <- Minus
2R 9440702..9440794 1..93 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:45 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1625..2290 99 <- Minus
2R 9435394..9435524 1494..1624 100 <- Minus
2R 9435586..9435993 1086..1493 100 <- Minus
2R 9436051..9436292 844..1085 100 <- Minus
2R 9436362..9436798 407..843 100 <- Minus
2R 9437420..9437732 94..406 100 <- Minus
2R 9440702..9440794 1..93 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:45 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9434669..9435334 1625..2290 99 <- Minus
2R 9435394..9435524 1494..1624 100 <- Minus
2R 9435586..9435993 1086..1493 100 <- Minus
2R 9436051..9436292 844..1085 100 <- Minus
2R 9436362..9436798 407..843 100 <- Minus
2R 9437420..9437732 94..406 100 <- Minus
2R 9440702..9440794 1..93 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:54 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5322174..5322839 1625..2290 99 <- Minus
arm_2R 5322899..5323029 1494..1624 100 <- Minus
arm_2R 5323091..5323498 1086..1493 100 <- Minus
arm_2R 5323556..5323797 844..1085 100 <- Minus
arm_2R 5323867..5324303 407..843 100 <- Minus
arm_2R 5324925..5325237 94..406 100 <- Minus
arm_2R 5328207..5328299 1..93 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:40 Download gff for LD19266.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9437561..9437997 407..843 100 <- Minus
2R 9435868..9436533 1625..2290 99 <- Minus
2R 9436593..9436723 1494..1624 100 <- Minus
2R 9436785..9437192 1086..1493 100 <- Minus
2R 9437250..9437491 844..1085 100 <- Minus
2R 9438619..9438931 94..406 100 <- Minus
2R 9441901..9441993 1..93 100   Minus

LD19266.pep Sequence

Translation from 130 to 1683

> LD19266.pep
MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN
TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD
QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR
THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN
GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS
KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT
EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN
NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN
MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI
TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN
QLNLDDFSLESLDPLRK*

LD19266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12503-PA 520 GF12503-PA 1..520 1..517 1952 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25283-PA 518 GG25283-PA 1..518 1..517 2639 97.1 Plus
Dere\GG12437-PA 1327 GG12437-PA 1165..1299 75..238 158 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21964-PA 514 GH21964-PA 1..514 1..517 1651 69.5 Plus
Dgri\GH20822-PA 1338 GH20822-PA 1170..1308 75..238 165 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-PD 533 CG11804-PD 17..533 1..517 2661 100 Plus
ced-6-PA 517 CG11804-PA 1..517 1..517 2661 100 Plus
ced-6-PC 517 CG11804-PC 1..517 1..517 2661 100 Plus
ced-6-PB 517 CG11804-PB 1..517 1..517 2661 100 Plus
ced-6-PF 514 CG11804-PF 1..514 1..517 2631 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19669-PA 534 GI19669-PA 1..534 1..517 1621 72.6 Plus
Dmoj\GI10712-PA 1357 GI10712-PA 1186..1324 75..238 161 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17132-PA 330 GL17132-PA 1..329 1..324 1406 83.9 Plus
Dper\GL13852-PA 1345 GL13852-PA 1183..1317 75..238 157 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11210-PA 537 GA11210-PA 1..537 1..517 2135 81 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20601-PA 517 GM20601-PA 1..517 1..517 2700 99.2 Plus
Dsec\GM23569-PA 1328 GM23569-PA 1166..1300 75..238 158 27.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10073-PA 398 GD10073-PA 3..398 122..517 2041 98.2 Plus
Dsim\GD15263-PA 105 GD15263-PA 1..93 1..93 483 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15034-PA 536 GJ15034-PA 1..536 1..517 1856 74.5 Plus
Dvir\GJ23127-PA 270 GJ23127-PA 102..240 75..238 154 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15827-PA 543 GK15827-PA 1..543 1..517 1748 73.2 Plus
Dwil\GK13161-PA 1373 GK13161-PA 1212..1345 75..238 162 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22280-PA 516 GE22280-PA 1..516 1..517 2478 96.1 Plus
Dyak\GE23961-PA 254 GE23961-PA 92..226 75..238 155 27.5 Plus

LD19266.hyp Sequence

Translation from 130 to 1683

> LD19266.hyp
MPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNN
TSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVD
QPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEITISIKGVAIQEPR
THKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGN
GDGSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLS
KAQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAPTT
EPQNGIEVASEALSNGKLDDDKLLIDTNSTTASTHSASPSSFLPIVPPRN
NLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRADETQEIGGTGRSAISN
MFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITSNNNSINSSGFSSELNI
TPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFGSDPFELNNGPNIFKQN
QLNLDDFSLESLDPLRK*

LD19266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
ced-6-PD 533 CG11804-PD 17..533 1..517 2661 100 Plus
ced-6-PA 517 CG11804-PA 1..517 1..517 2661 100 Plus
ced-6-PC 517 CG11804-PC 1..517 1..517 2661 100 Plus
ced-6-PB 517 CG11804-PB 1..517 1..517 2661 100 Plus
ced-6-PF 514 CG11804-PF 1..514 1..517 2631 99.4 Plus