Clone LD19391 Report

Search the DGRC for LD19391

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:193
Well:91
Vector:pBS SK-
Associated Gene/Transcripttwe-RA
Protein status:LD19391.pep: gold
Preliminary Size:2197
Sequenced Size:2387

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4965 2001-01-01 Release 2 assignment
CG4965 2001-10-10 Blastp of sequenced clone
CG4965 2003-01-01 Sim4 clustering to Release 3
twe 2008-04-29 Release 5.5 accounting
twe 2008-08-15 Release 5.9 accounting
twe 2008-12-18 5.12 accounting

Clone Sequence Records

LD19391.complete Sequence

2387 bp (2387 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061266

> LD19391.complete
AGCCATGCAAATACCAACAAAAAAATATACAAGCAATTTAAATTCAAACT
AGAGCGTCCTGTTTAAATACGGCGCAGTGGTGAGTTAGCAGGTGGTGGGT
TTGCATCGGTAGAATGGGGAATTGATAAAGGCGCCAATAAAGTTGACCGC
CAAAAGCGAAACAAACAAGTCGACAGAACAAGAAAATCGTCAAGGATTTG
GCAATCGAAATCACTGCGCACGCTGGAACCCAAAATCTGAACTTCCCAAT
AGTTACGTATATCGCAAATAGATCAGGATGGCGAGCAAGCGGCTAATGCT
CGATGTGGAGGAAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATT
TCGATCCCCATGATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCA
GCCGTGCAGGAGACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGC
CAGCACCACCGTTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATG
GAGCCCGCCTGGATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAAC
AGGACCCTGAATAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTT
CAGTAGCTCCTGCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGT
ACATGGACATGTTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTG
CCCGATGACTTGGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAA
TTTAGAGGAGATGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCA
TGTATCCCAGTGAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAG
ACCAACATGCCCATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGA
CGCCGAGATCATGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATC
TCAGCAAGCCATGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGT
GATCTAAAGACCATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGA
GTTTGATGAACAATTGGGAAGCCAGGGCGGATACGAGATCATAGACTGCC
GTTACCCATACGAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTG
TACACACGTGGGCAGATACAGGAGGCGTTTCCCACGCTGACCTCCAATCA
GGAAAATCGACGCATCTACGTCTTCCACTGTGAGTTCTCCTCGGAACGGG
GTCCCAAGCTATTGCGCTACCTGCGGAGCAACGACAGAAGTCAGCATACC
CACAACTATCCGGCACTGGACTATCCTGAACTTTATATCCTGCACAATGG
GTACAAGGAGTTCTTCGGTCTATACTCGCAGCTATGCCAGCCCAGCCAAT
ATGTACCAATGCTGGCACCGGCGCACAATGATGAGTTTCGATATTTTCGG
GCCAAGACCAAGTCCTGGCAATGTGGCGAGGGCGGAGACAGTGGAATCGG
CGGTGGAGGCTCTCGCGGCCTCCGGAAATCACGTTCACGACTGCTCTACG
CCGAGTGACCATTTCAGGCTATAGATACAATTCTCGAATCGATCCACCTG
CCATAAGCTCACAGAGATCTCAATGAGAAACGATGGCTGCCCAATTTTAC
TCATAGAATTATTTTGTAATATTTAAGGACGCACATTTTAAGGTTCATTT
CTTGTTGCGTTGTTCAAATGTTGTGAAAGCACTTTATATTTATTTAGTTC
TTGATTTTGTATTATGTTCCACGTTGTGTGGACACAGAGCACCCAAATGG
GAACCACCAAAGATGGGAAGAAGAACAGAAAATGGATATATGTTCTCTAG
TCAGTGTATGTAATAGTTTCAAAATTAATTAAAGTTCATTTTTGTGTTCG
GAATTTAAAAGTTAACTTAAGAAAGTATTTCATATTTTATTTTAGTATTT
AAGCATAATAATCTAACCATTGGATTTAAGAACTTCAAAGGAAATTACGA
AAATTGTCTATGTATGAATACAAACTATGCTGAAACTATTTATGTGGATT
CCACCTACATCGGTCAACTTTTATTAAAAGTATCTAAAAACAATCATTTA
ATACACAATTTAAAAGTTTTAGGATGCATAATGCTTAATTAGAACAGGAG
ATGTAAGAATACTCATAAAATATTTCAAGAAAATTCGTGATACAAATTTT
AAATCAAATGAAGAAAAATGTTCCTTAATTTATATGCTATTATAGTTTAT
ATATATTACAAAATTTTAAATGCTTTAAGCTATTGAAGAAATATGAAGAG
AACAAATAATTTGTTACTGATCGAGATAATAAAAAGGACCACTATTTTTG
AGAACAGTTATAAAATACTAAAAAAAAAAAAAAAAAA

LD19391.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
twe-RA 2413 twe-RA 47..2413 1..2367 11835 100 Plus
twe.a 2353 twe.a 262..2353 278..2369 10460 100 Plus
twe.a 2353 twe.a 11..261 1..251 1255 100 Plus
EndoGI-RA 1535 EndoGI-RA 1478..1535 2369..2312 290 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16258270..16260362 2369..277 10465 100 Minus
chr2L 23010047 chr2L 16260447..16260723 277..1 1355 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16259414..16261506 2369..277 10465 100 Minus
2L 23513712 2L 16261591..16261867 277..1 1385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16259414..16261506 2369..277 10465 100 Minus
2L 23513712 2L 16261591..16261867 277..1 1385 100 Minus
Blast to na_te.dros performed 2019-03-16 09:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 2508..2633 1985..1857 150 61.5 Minus
Ddip\Bari1 1677 Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. 1327..1458 2123..2255 121 57.5 Plus
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3793..3950 2147..2305 117 56.2 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 3499..3626 1895..2027 115 59.1 Plus
Stalker 7256 Stalker STALKER 7256bp 3393..3520 1895..2027 115 59.1 Plus

LD19391.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:05:36 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16258270..16260361 278..2369 100 <- Minus
chr2L 16260447..16260723 1..277 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:58 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 1..1281 278..1558 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:25 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 1..1281 278..1558 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:56:54 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RB 1..1281 278..1558 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:14 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 1..1281 278..1558 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:37 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RB 1..1281 278..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:35 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 9..2375 1..2367 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:25 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 9..2375 1..2367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:56:54 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 11..2379 1..2369 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:15 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 9..2375 1..2367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:37 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
twe-RA 11..2379 1..2369 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:36 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16259414..16261505 278..2369 100 <- Minus
2L 16261591..16261867 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:36 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16259414..16261505 278..2369 100 <- Minus
2L 16261591..16261867 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:36 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16259414..16261505 278..2369 100 <- Minus
2L 16261591..16261867 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:56:54 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16259414..16261505 278..2369 100 <- Minus
arm_2L 16261591..16261867 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:56 Download gff for LD19391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16259414..16261505 278..2369 100 <- Minus
2L 16261591..16261867 1..277 100   Minus

LD19391.pep Sequence

Translation from 277 to 1557

> LD19391.pep
MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW
MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL
SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS
GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ
RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT
LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA
FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP
ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG
EGGDSGIGGGGSRGLRKSRSRLLYAE*

LD19391.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14942-PA 441 GF14942-PA 1..441 1..426 1373 65.9 Plus
Dana\GF22894-PA 482 GF22894-PA 104..481 101..423 729 44.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24180-PA 425 GG24180-PA 1..425 1..426 1775 90.8 Plus
Dere\GG12021-PA 478 GG12021-PA 107..477 101..423 718 45.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13414-PA 374 GH13414-PA 1..374 1..426 970 53.9 Plus
Dgri\GH14002-PA 529 GH14002-PA 123..528 92..423 628 39.8 Plus
Dgri\GH24474-PA 284 GH24474-PA 57..270 203..424 594 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
twe-PD 426 CG4965-PD 1..426 1..426 2246 100 Plus
twe-PC 426 CG4965-PC 1..426 1..426 2246 100 Plus
twe-PB 426 CG4965-PB 1..426 1..426 2246 100 Plus
twe-PA 426 CG4965-PA 1..426 1..426 2246 100 Plus
stg-PB 479 CG1395-PB 107..478 101..423 711 45.1 Plus
stg-PA 479 CG1395-PA 107..478 101..423 711 45.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17651-PA 416 GI17651-PA 1..415 1..426 1040 55.3 Plus
Dmoj\GI22346-PA 508 GI22346-PA 122..507 103..423 696 44.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25772-PA 430 GL25772-PA 1..430 1..426 1231 61.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18558-PA 430 GA18558-PA 1..430 1..426 1229 61.9 Plus
Dpse\GA12648-PA 497 GA12648-PA 270..496 201..423 642 55 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17918-PA 426 GM17918-PA 1..426 1..426 2007 94.1 Plus
Dsec\GM12247-PA 472 GM12247-PA 78..471 79..423 728 43.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21927-PA 426 GD21927-PA 1..426 1..426 2012 94.1 Plus
Dsim\GD17842-PA 479 GD17842-PA 107..478 101..423 715 45.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18216-PA 435 GJ18216-PA 1..435 1..426 1053 54.6 Plus
Dvir\GJ14225-PA 372 GJ14225-PA 274..371 321..423 294 56.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18093-PA 426 GK18093-PA 1..426 1..426 1132 55.5 Plus
Dwil\GK11032-PA 503 GK11032-PA 275..502 201..423 637 56.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19373-PA 425 GE19373-PA 1..425 1..426 1772 87.6 Plus
Dyak\GE10458-PA 478 GE10458-PA 107..477 101..423 714 45.7 Plus

LD19391.hyp Sequence

Translation from 277 to 1557

> LD19391.hyp
MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW
MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL
SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS
GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ
RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT
LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA
FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP
ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG
EGGDSGIGGGGSRGLRKSRSRLLYAE*

LD19391.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
twe-PD 426 CG4965-PD 1..426 1..426 2246 100 Plus
twe-PC 426 CG4965-PC 1..426 1..426 2246 100 Plus
twe-PB 426 CG4965-PB 1..426 1..426 2246 100 Plus
twe-PA 426 CG4965-PA 1..426 1..426 2246 100 Plus
stg-PB 479 CG1395-PB 107..478 101..423 711 45.1 Plus