BDGP Sequence Production Resources |
Search the DGRC for LD19391
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 193 |
Well: | 91 |
Vector: | pBS SK- |
Associated Gene/Transcript | twe-RA |
Protein status: | LD19391.pep: gold |
Preliminary Size: | 2197 |
Sequenced Size: | 2387 |
Gene | Date | Evidence |
---|---|---|
CG4965 | 2001-01-01 | Release 2 assignment |
CG4965 | 2001-10-10 | Blastp of sequenced clone |
CG4965 | 2003-01-01 | Sim4 clustering to Release 3 |
twe | 2008-04-29 | Release 5.5 accounting |
twe | 2008-08-15 | Release 5.9 accounting |
twe | 2008-12-18 | 5.12 accounting |
2387 bp (2387 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061266
> LD19391.complete AGCCATGCAAATACCAACAAAAAAATATACAAGCAATTTAAATTCAAACT AGAGCGTCCTGTTTAAATACGGCGCAGTGGTGAGTTAGCAGGTGGTGGGT TTGCATCGGTAGAATGGGGAATTGATAAAGGCGCCAATAAAGTTGACCGC CAAAAGCGAAACAAACAAGTCGACAGAACAAGAAAATCGTCAAGGATTTG GCAATCGAAATCACTGCGCACGCTGGAACCCAAAATCTGAACTTCCCAAT AGTTACGTATATCGCAAATAGATCAGGATGGCGAGCAAGCGGCTAATGCT CGATGTGGAGGAAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATT TCGATCCCCATGATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCA GCCGTGCAGGAGACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGC CAGCACCACCGTTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATG GAGCCCGCCTGGATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAAC AGGACCCTGAATAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTT CAGTAGCTCCTGCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGT ACATGGACATGTTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTG CCCGATGACTTGGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAA TTTAGAGGAGATGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCA TGTATCCCAGTGAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAG ACCAACATGCCCATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGA CGCCGAGATCATGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATC TCAGCAAGCCATGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGT GATCTAAAGACCATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGA GTTTGATGAACAATTGGGAAGCCAGGGCGGATACGAGATCATAGACTGCC GTTACCCATACGAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTG TACACACGTGGGCAGATACAGGAGGCGTTTCCCACGCTGACCTCCAATCA GGAAAATCGACGCATCTACGTCTTCCACTGTGAGTTCTCCTCGGAACGGG GTCCCAAGCTATTGCGCTACCTGCGGAGCAACGACAGAAGTCAGCATACC CACAACTATCCGGCACTGGACTATCCTGAACTTTATATCCTGCACAATGG GTACAAGGAGTTCTTCGGTCTATACTCGCAGCTATGCCAGCCCAGCCAAT ATGTACCAATGCTGGCACCGGCGCACAATGATGAGTTTCGATATTTTCGG GCCAAGACCAAGTCCTGGCAATGTGGCGAGGGCGGAGACAGTGGAATCGG CGGTGGAGGCTCTCGCGGCCTCCGGAAATCACGTTCACGACTGCTCTACG CCGAGTGACCATTTCAGGCTATAGATACAATTCTCGAATCGATCCACCTG CCATAAGCTCACAGAGATCTCAATGAGAAACGATGGCTGCCCAATTTTAC TCATAGAATTATTTTGTAATATTTAAGGACGCACATTTTAAGGTTCATTT CTTGTTGCGTTGTTCAAATGTTGTGAAAGCACTTTATATTTATTTAGTTC TTGATTTTGTATTATGTTCCACGTTGTGTGGACACAGAGCACCCAAATGG GAACCACCAAAGATGGGAAGAAGAACAGAAAATGGATATATGTTCTCTAG TCAGTGTATGTAATAGTTTCAAAATTAATTAAAGTTCATTTTTGTGTTCG GAATTTAAAAGTTAACTTAAGAAAGTATTTCATATTTTATTTTAGTATTT AAGCATAATAATCTAACCATTGGATTTAAGAACTTCAAAGGAAATTACGA AAATTGTCTATGTATGAATACAAACTATGCTGAAACTATTTATGTGGATT CCACCTACATCGGTCAACTTTTATTAAAAGTATCTAAAAACAATCATTTA ATACACAATTTAAAAGTTTTAGGATGCATAATGCTTAATTAGAACAGGAG ATGTAAGAATACTCATAAAATATTTCAAGAAAATTCGTGATACAAATTTT AAATCAAATGAAGAAAAATGTTCCTTAATTTATATGCTATTATAGTTTAT ATATATTACAAAATTTTAAATGCTTTAAGCTATTGAAGAAATATGAAGAG AACAAATAATTTGTTACTGATCGAGATAATAAAAAGGACCACTATTTTTG AGAACAGTTATAAAATACTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
twe-RA | 2413 | twe-RA | 47..2413 | 1..2367 | 11835 | 100 | Plus |
twe.a | 2353 | twe.a | 262..2353 | 278..2369 | 10460 | 100 | Plus |
twe.a | 2353 | twe.a | 11..261 | 1..251 | 1255 | 100 | Plus |
EndoGI-RA | 1535 | EndoGI-RA | 1478..1535 | 2369..2312 | 290 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 2508..2633 | 1985..1857 | 150 | 61.5 | Minus |
Ddip\Bari1 | 1677 | Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. | 1327..1458 | 2123..2255 | 121 | 57.5 | Plus |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3793..3950 | 2147..2305 | 117 | 56.2 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 3499..3626 | 1895..2027 | 115 | 59.1 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 3393..3520 | 1895..2027 | 115 | 59.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16258270..16260361 | 278..2369 | 100 | <- | Minus |
chr2L | 16260447..16260723 | 1..277 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 1..1281 | 278..1558 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 1..1281 | 278..1558 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RB | 1..1281 | 278..1558 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 1..1281 | 278..1558 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RB | 1..1281 | 278..1558 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 9..2375 | 1..2367 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 9..2375 | 1..2367 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 11..2379 | 1..2369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 9..2375 | 1..2367 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twe-RA | 11..2379 | 1..2369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16259414..16261505 | 278..2369 | 100 | <- | Minus |
2L | 16261591..16261867 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16259414..16261505 | 278..2369 | 100 | <- | Minus |
2L | 16261591..16261867 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16259414..16261505 | 278..2369 | 100 | <- | Minus |
2L | 16261591..16261867 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16259414..16261505 | 278..2369 | 100 | <- | Minus |
arm_2L | 16261591..16261867 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16259414..16261505 | 278..2369 | 100 | <- | Minus |
2L | 16261591..16261867 | 1..277 | 100 | Minus |
Translation from 277 to 1557
> LD19391.pep MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG EGGDSGIGGGGSRGLRKSRSRLLYAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14942-PA | 441 | GF14942-PA | 1..441 | 1..426 | 1373 | 65.9 | Plus |
Dana\GF22894-PA | 482 | GF22894-PA | 104..481 | 101..423 | 729 | 44.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24180-PA | 425 | GG24180-PA | 1..425 | 1..426 | 1775 | 90.8 | Plus |
Dere\GG12021-PA | 478 | GG12021-PA | 107..477 | 101..423 | 718 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13414-PA | 374 | GH13414-PA | 1..374 | 1..426 | 970 | 53.9 | Plus |
Dgri\GH14002-PA | 529 | GH14002-PA | 123..528 | 92..423 | 628 | 39.8 | Plus |
Dgri\GH24474-PA | 284 | GH24474-PA | 57..270 | 203..424 | 594 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
twe-PD | 426 | CG4965-PD | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PC | 426 | CG4965-PC | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PB | 426 | CG4965-PB | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PA | 426 | CG4965-PA | 1..426 | 1..426 | 2246 | 100 | Plus |
stg-PB | 479 | CG1395-PB | 107..478 | 101..423 | 711 | 45.1 | Plus |
stg-PA | 479 | CG1395-PA | 107..478 | 101..423 | 711 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17651-PA | 416 | GI17651-PA | 1..415 | 1..426 | 1040 | 55.3 | Plus |
Dmoj\GI22346-PA | 508 | GI22346-PA | 122..507 | 103..423 | 696 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25772-PA | 430 | GL25772-PA | 1..430 | 1..426 | 1231 | 61.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18558-PA | 430 | GA18558-PA | 1..430 | 1..426 | 1229 | 61.9 | Plus |
Dpse\GA12648-PA | 497 | GA12648-PA | 270..496 | 201..423 | 642 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17918-PA | 426 | GM17918-PA | 1..426 | 1..426 | 2007 | 94.1 | Plus |
Dsec\GM12247-PA | 472 | GM12247-PA | 78..471 | 79..423 | 728 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21927-PA | 426 | GD21927-PA | 1..426 | 1..426 | 2012 | 94.1 | Plus |
Dsim\GD17842-PA | 479 | GD17842-PA | 107..478 | 101..423 | 715 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18216-PA | 435 | GJ18216-PA | 1..435 | 1..426 | 1053 | 54.6 | Plus |
Dvir\GJ14225-PA | 372 | GJ14225-PA | 274..371 | 321..423 | 294 | 56.3 | Plus |
Translation from 277 to 1557
> LD19391.hyp MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG EGGDSGIGGGGSRGLRKSRSRLLYAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
twe-PD | 426 | CG4965-PD | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PC | 426 | CG4965-PC | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PB | 426 | CG4965-PB | 1..426 | 1..426 | 2246 | 100 | Plus |
twe-PA | 426 | CG4965-PA | 1..426 | 1..426 | 2246 | 100 | Plus |
stg-PB | 479 | CG1395-PB | 107..478 | 101..423 | 711 | 45.1 | Plus |