Clone LD19437 Report

Search the DGRC for LD19437

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:194
Well:37
Vector:pBS SK-
Associated Gene/TranscriptBsg-RA
Protein status:LD19437.pep: gold
Preliminary Size:2988
Sequenced Size:2724

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31605 2003-01-01 Sim4 clustering to Release 3
CG31605 2003-03-10 Blastp of sequenced clone
Bsg 2008-04-29 Release 5.5 accounting
Bsg 2008-08-15 Release 5.9 accounting
Bsg 2008-12-18 5.12 accounting

Clone Sequence Records

LD19437.complete Sequence

2724 bp (2724 high quality bases) assembled on 2003-03-10

GenBank Submission: BT005198

> LD19437.complete
TAAGGTCATTCGCGTGAAAATATCAGCGAGGAAAAAATCGAATTTTTGTG
TTTTGTGTGCTAGTAAGTTAAGCTTAAAGTACAAAAAAAAAAAAAATAAG
AAAAGCAAAGAAAAAGAAACACCACAACCAACAACAACATCAACAACCAA
CCAACCAACAGCCACAAATAATTAATCAATCATTAAACGGAGTAAATTCA
CAAATCTGTAATAAATGCAAATGACAAGGAAATAACGAAAACGACAACAA
CAACAAGTCACCGCCAACAACAACAACCACACATCGGCAGCATAATTAAC
AACAACCAACAACAACAACGGATCAATACCAAAGATGGAGGCAAAATTCT
TGGCTAGCGCTCTTTCATTCCTCTCGATATTTTTAGCGATTTATGCTCAA
TCACTTGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATCAAATGAA
ATTTTACGACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTGAAAGACG
GTACGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGCTGTGACG
GATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACGAGAACAA
GTTCATCATCGATAAGACGGATACGAACGACGATGGCAAATACAGTTGCG
AGTTTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGTTGTTGTA
CGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGTCGGTGAC
CTGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGCCAATG
TAACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGATAAT
GGTGTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGGACGACAG
AGGCGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTACGGTGGGA
ACACCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAAGGGCAAA
TTTGCCGCCTTGTGGCCTTTCCTGGGCATCTGTGCTGAGGTGCTGATTCT
GTGCATCATCATTCTCATTTATGAGAAGCGACGCAACAAGAGCGAACTGG
AGGAGAGTGATACTGATCCCCAAGAACAGTAAGTGTGCTACTCTCCAACC
CACACACCAACCAACCAACCAACCAACCTACCAACCAATCAACCCCACAC
CACAACAAACAAAATACCAACAACATAAACTGTCAACACCAAATAATATT
AAAAATCGGCAAACAAACAAACAAACAAGAAACAAAACGCAACAGAAGAG
GAAAAAGTTGAAATTTTAGTTTTATACTGCAAATTAAAGACGTTGAAGCT
GCAGGCGAATGCAGACCAGACACCAACATAACCATACGAAACCAGATACA
AATACGGATACGGAGAAGAATCGTACTTACGGACGGACAGACAAACGGAC
GGAGGTGCGGCAGCTACAACAATTAGTAAAATTTTCTTAGTTAACAATTT
CTAATAGTTACCACAATGGGAAACGAAAAATGAATATGAATGAATTTTGT
GTTTGACGCAAACGGATATGCGATAAATTGAAAAGTTAAATGTTAAGAAA
TTATATAGTTTTTGCTAATTTTGTATTATAATGAAGTCCACTGTGCCTGG
AGCGTCGCAAAGAAATTAATAAAATAACGAGACCCAGAGTAGTGAAATGG
AGAGTGATCCACTAATCGTTGTGGTTTCTACTTTTTTTTCGATGTGTGCT
AAGCGAAAGCAAATATATTCGTAATCCGTATATTTGTTTCGCCCAAAAAC
TCTGACAAACACAAAACGGAAACGGAAACACAAAACGAACGCACACAGAC
AGCACTCACTCACACCAACACATCCGAGAGTTAAAACAAAATATGTAGTT
CTCTAGATATAATATACTATAAACTTAATTCATCGTAAATATGCCCTATA
ATTTCTTGCTTTATTCAAATCGAAAATTCATTTTTCGCTGAGCTTGTTTC
TGTTGCTTAAAAAACTACAAACGAAACTTAATGAGAACACGTACACAAAT
CCTTTCTTTTTATGTCAAAGTCCAGTCCATAATATTATTACTATCATGTA
AAGGAATACGACAAGAAAATGTTATCAACTTTGTTTTTAAGTACTTATTG
TTTAATTATATACATTTAAAAGAAACCCACATTAAAAAAAGAAAACACCG
TAGTCAAAGCAAAAGTTGTCATTTTGCTTTGAGAGATATAAAAAAACACA
GAATTAATCGTTACTTATGTATATTATAAATCATTATATAAGCTTATTAA
TTTCTTGGCAGTGAATAAAACATACACACGAAAACACAGAAGTCGTAGCT
CAACACGTTTGCATTGATTTGGAATTATAATTAGAATTATTTGTATATTG
TACACAAAAGAGTATTTTCCCCGACACCCAATGCCCCTCAACCCTGCCCC
TCTAGTTGCGCACTTTCTGTTTTTTCTTGTCGCCTCTGTTGATTTTGCTG
TGTATAAACTCGATAACTTTATCATTTTTATTCTTTGTATCTAGTATCTA
AACACTTGTGCTATTCTCTACCGATTACAACTATCCATTATGATTTTGTG
AGTTTTGAGATTGATTTCTACCGAAATATAAAACAAACAACAACAACAAA
AAATACAATTGTAAATTAAACAAATGAAAACAAAAAAAAATATATAAAAA
ATAAACAAAAAAAAAAAAAAAAAA

LD19437.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg.j 3140 Bsg.j 472..3128 61..2718 13250 99.9 Plus
Bsg.aj 3500 Bsg.aj 422..3078 61..2718 13250 99.9 Plus
Bsg-RD 2975 Bsg-RD 307..2963 61..2718 13250 99.9 Plus
Bsg.j 3140 Bsg.j 38..100 1..63 315 100 Plus
Bsg.aj 3500 Bsg.aj 38..100 1..63 315 100 Plus
Bsg-RD 2975 Bsg-RD 38..100 1..63 315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8106780..8108491 995..2706 8530 99.9 Plus
chr2L 23010047 chr2L 8088411..8088755 61..407 1620 99.1 Plus
chr2L 23010047 chr2L 8106270..8106481 794..1005 1015 98.6 Plus
chr2L 23010047 chr2L 8105872..8106033 525..686 810 100 Plus
chr2L 23010047 chr2L 8104725..8104844 407..526 600 100 Plus
chr2L 23010047 chr2L 8106098..8106206 686..794 545 100 Plus
chr2L 23010047 chr2L 8082457..8082519 1..63 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8107747..8109470 995..2718 8620 100 Plus
2L 23513712 2L 8089391..8089736 61..407 1685 99.7 Plus
2L 23513712 2L 8107237..8107448 794..1005 1030 99.1 Plus
2L 23513712 2L 8106839..8107000 525..686 810 100 Plus
2L 23513712 2L 8105691..8105810 407..526 600 100 Plus
2L 23513712 2L 8107065..8107173 686..794 545 100 Plus
2L 23513712 2L 8083459..8083521 1..63 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8107747..8109470 995..2718 8620 100 Plus
2L 23513712 2L 8089391..8089736 61..407 1695 99.7 Plus
2L 23513712 2L 8107237..8107448 794..1005 1030 99 Plus
2L 23513712 2L 8106839..8107000 525..686 810 100 Plus
2L 23513712 2L 8105691..8105810 407..526 600 100 Plus
2L 23513712 2L 8107065..8107173 686..794 545 100 Plus
2L 23513712 2L 8083459..8083521 1..63 315 100 Plus
Blast to na_te.dros performed 2019-03-16 18:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Helena 691 Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). 610..688 2580..2658 161 67.1 Plus
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2486..2539 2408..2356 132 76.4 Minus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2605..2738 2188..2060 126 59.3 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 69..154 2201..2115 126 65.2 Minus
Dbuz\ISBu2 726 Dbuz\ISBu2 ISBU2 726bp 118..182 1487..1422 120 66.7 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1583..1668 2115..2201 117 64 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 1252..1327 1380..1450 117 67.9 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 997..1096 1875..1982 116 61.1 Plus

LD19437.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:07:49 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8105873..8106033 526..686 100 -> Plus
chr2L 8106099..8106206 687..794 100 -> Plus
chr2L 8082457..8082519 1..63 100 -> Plus
chr2L 8088414..8088578 64..230 72 == Plus
chr2L 8088668..8088755 320..407 100 -> Plus
chr2L 8104726..8104843 408..525 100 -> Plus
chr2L 8106271..8106471 795..995 99 -> Plus
chr2L 8106781..8108461 996..2676 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:03:53 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RE 1..798 335..1132 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:48:35 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RC 1..798 335..1132 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:35 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RF 1..798 335..1132 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:30:30 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RE 1..798 335..1132 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:34 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RF 1..798 335..1132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:03:52 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RC 38..100 1..63 100 -> Plus
Bsg-RC 425..3041 64..2681 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:48:35 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RC 38..100 1..63 100 -> Plus
Bsg-RC 425..3041 64..2681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:35 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RB 40..2719 1..2681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:30:31 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RC 38..100 1..63 100 -> Plus
Bsg-RC 425..3041 64..2681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:34 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg-RB 40..2719 1..2681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:49 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8089394..8089736 64..407 99 -> Plus
2L 8105692..8105809 408..525 100 -> Plus
2L 8106840..8107000 526..686 100 -> Plus
2L 8107066..8107173 687..794 100 -> Plus
2L 8107238..8107438 795..995 100 -> Plus
2L 8107748..8109433 996..2681 100   Plus
2L 8083459..8083521 1..63 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:49 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8089394..8089736 64..407 99 -> Plus
2L 8105692..8105809 408..525 100 -> Plus
2L 8106840..8107000 526..686 100 -> Plus
2L 8107066..8107173 687..794 100 -> Plus
2L 8107238..8107438 795..995 100 -> Plus
2L 8107748..8109433 996..2681 100   Plus
2L 8083459..8083521 1..63 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:49 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8089394..8089736 64..407 99 -> Plus
2L 8105692..8105809 408..525 100 -> Plus
2L 8106840..8107000 526..686 100 -> Plus
2L 8107066..8107173 687..794 100 -> Plus
2L 8107238..8107438 795..995 100 -> Plus
2L 8107748..8109433 996..2681 100   Plus
2L 8083459..8083521 1..63 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:35 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8083459..8083521 1..63 100 -> Plus
arm_2L 8089394..8089736 64..407 99 -> Plus
arm_2L 8105692..8105809 408..525 100 -> Plus
arm_2L 8106840..8107000 526..686 100 -> Plus
arm_2L 8107066..8107173 687..794 100 -> Plus
arm_2L 8107238..8107438 795..995 100 -> Plus
arm_2L 8107748..8109433 996..2681 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:07:59 Download gff for LD19437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8106840..8107000 526..686 100 -> Plus
2L 8107066..8107173 687..794 100 -> Plus
2L 8107238..8107438 795..995 100 -> Plus
2L 8089394..8089736 64..407 99 -> Plus
2L 8105692..8105809 408..525 100 -> Plus
2L 8107748..8109433 996..2681 100   Plus
2L 8083459..8083521 1..63 100 -> Plus

LD19437.pep Sequence

Translation from 334 to 1131

> LD19437.pep
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ*

LD19437.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14758-PA 270 GF14758-PA 1..262 1..265 1056 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10513-PA 640 GG10513-PA 391..632 24..265 1207 95.9 Plus
Dere\GG18558-PA 874 GG18558-PA 157..311 48..202 153 28.3 Plus
Dere\GG24592-PA 1463 GG24592-PA 207..395 48..240 149 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11616-PA 648 GH11616-PA 399..648 16..265 853 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg-PB 265 CG31605-PB 1..265 1..265 1369 100 Plus
Bsg-PH 265 CG31605-PH 1..265 1..265 1369 100 Plus
Bsg-PF 265 CG31605-PF 1..265 1..265 1369 100 Plus
Bsg-PA 265 CG31605-PA 1..265 1..265 1369 100 Plus
Bsg-PI 265 CG31605-PI 1..265 1..265 1369 100 Plus
Bsg-PC 265 CG31605-PC 1..265 1..265 1369 100 Plus
Bsg-PD 265 CG31605-PD 1..265 1..265 1369 100 Plus
Bsg-PE 265 CG31605-PE 1..265 1..265 1369 100 Plus
Bsg-PJ 266 CG31605-PJ 1..264 1..264 1364 100 Plus
Bsg-PG 648 CG31605-PG 399..640 24..265 1262 99.6 Plus
Fas2-PB 773 CG3665-PB 156..315 48..207 150 26.9 Plus
Fas2-PC 811 CG3665-PC 156..315 48..207 150 26.9 Plus
Fas2-PH 832 CG3665-PH 156..315 48..207 150 26.9 Plus
Fas2-PD 844 CG3665-PD 156..315 48..207 150 26.9 Plus
Fas2-PF 859 CG3665-PF 171..330 48..207 150 26.9 Plus
Fas2-PA 873 CG3665-PA 156..315 48..207 150 26.9 Plus
Fas2-PG 885 CG3665-PG 156..315 48..207 150 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17919-PA 272 GI17919-PA 1..264 1..265 991 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24757-PA 271 GL24757-PA 1..263 1..265 1012 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16333-PA 261 GA16333-PA 1..261 1..265 1022 79.6 Plus
Dpse\GA17599-PA 875 GA17599-PA 159..312 48..202 147 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16732-PA 650 GM16732-PA 401..642 24..265 1190 95.5 Plus
Dsec\GM16610-PA 1458 GM16610-PA 207..395 48..240 149 29.8 Plus
Dsec\GM12701-PA 888 GM12701-PA 171..325 48..202 147 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23503-PA 493 GD23503-PA 323..493 95..265 891 97.1 Plus
Dsim\GD22909-PA 1405 GD22909-PA 150..338 48..240 148 29.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17691-PA 655 GJ17691-PA 416..655 25..265 889 72.7 Plus
Dvir\GJ20377-PA 84 GJ20377-PA 2..84 181..265 321 83.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15320-PA 264 GK15320-PA 1..264 1..265 1078 77.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18733-PA 651 GE18733-PA 403..643 24..265 1034 86.8 Plus
Dyak\GE16870-PA 873 GE16870-PA 156..310 48..202 158 28.9 Plus
Dyak\GE15600-PA 1412 GE15600-PA 153..341 48..240 148 29.8 Plus

LD19437.hyp Sequence

Translation from 334 to 1131

> LD19437.hyp
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ*

LD19437.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg-PB 265 CG31605-PB 1..265 1..265 1369 100 Plus
Bsg-PH 265 CG31605-PH 1..265 1..265 1369 100 Plus
Bsg-PF 265 CG31605-PF 1..265 1..265 1369 100 Plus
Bsg-PA 265 CG31605-PA 1..265 1..265 1369 100 Plus
Bsg-PI 265 CG31605-PI 1..265 1..265 1369 100 Plus