Clone LD19518 Report

Search the DGRC for LD19518

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:195
Well:18
Vector:pBS SK-
Associated Gene/TranscriptCG10038-RA
Protein status:LD19518.pep: gold
Preliminary Size:1303
Sequenced Size:1195

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10038 2001-01-01 Release 2 assignment
CG10038 2001-10-10 Blastp of sequenced clone
CG10038 2003-01-01 Sim4 clustering to Release 3
CG10038 2008-04-29 Release 5.5 accounting
CG10038 2008-08-15 Release 5.9 accounting
CG10038 2008-12-18 5.12 accounting

Clone Sequence Records

LD19518.complete Sequence

1195 bp (1195 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061267

> LD19518.complete
TCAAAACAAAAACTCGAACAACAATTCTATATAAATAAAAGCTTTTTCCA
ATCGCTCTATTACTACGTAAGTGCCGAACCGTGTGGAAGCCACGCGACCG
ATTGTAATGTGGTCTAGGCTTATTCAAATATTTCGACCCCTCAGAAGTTT
TCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAGGAGGCTCTCA
TCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGGAGTGCTGCGC
AAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCTTTTCCTACAA
CGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAGAAGCTAGCCA
ACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAACGGTCTTAGT
CGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTTCGTTTGTATT
CTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTAGTCCTCATCC
ATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAGTTTAATTATT
AACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGCGACAGGCCCA
AAAACTGGGATACGATCTCCTCATCACCAATGCCAACGATTGCACACGAT
TCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATACGTCCGTAGAG
CACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGAAACCCGAGAG
TGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACTCTTGATTTGG
TGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGCCATTGCCTTC
ACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGGAGTACCTGTG
CGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTAGACACACCCG
TTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGGCCACACTAAG
CACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCAAGTTCATTGA
GGAAAAGTATGAACAGCGAGCGAATAAGAAGTGACAGCCAGCATCTACTT
GTTAAGGCATTTTTGTACTCCCCATTTATAGTAAATATCATGGAGATGTG
AATATAAATTATGTTTTTACCGTCTGCAAAAAAAAAAAAAAAAAA

LD19518.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-RA 1229 CG10038-RA 30..1207 1..1178 5890 100 Plus
CG10038-RB 1233 CG10038-RB 122..1155 145..1178 5170 100 Plus
CG10038.a 1155 CG10038.a 106..1136 148..1178 5155 100 Plus
CG10038-RB 1233 CG10038-RB 56..121 1..66 330 100 Plus
CG10038.a 1155 CG10038.a 40..105 1..66 330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8174366..8174754 1177..789 1915 99.5 Minus
chr3R 27901430 chr3R 8174797..8175061 803..539 1325 100 Minus
chr3R 27901430 chr3R 8175753..8175988 236..1 1180 100 Minus
chr3R 27901430 chr3R 8175174..8175361 540..353 940 100 Minus
chr3R 27901430 chr3R 8175574..8175691 352..235 590 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12348986..12349375 1178..789 1920 99.5 Minus
3R 32079331 3R 12349418..12349682 803..539 1325 100 Minus
3R 32079331 3R 12350374..12350609 236..1 1180 100 Minus
3R 32079331 3R 12349795..12349982 540..353 940 100 Minus
3R 32079331 3R 12350195..12350312 352..235 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12089817..12090206 1178..789 1920 99.4 Minus
3R 31820162 3R 12090249..12090513 803..539 1325 100 Minus
3R 31820162 3R 12091205..12091440 236..1 1180 100 Minus
3R 31820162 3R 12090626..12090813 540..353 940 100 Minus
3R 31820162 3R 12091026..12091143 352..235 590 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:12:01 has no hits.

LD19518.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:12:59 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8175753..8175988 1..236 100   Minus
chr3R 8175174..8175361 353..540 100 <- Minus
chr3R 8175574..8175689 237..352 100 <- Minus
chr3R 8174366..8174743 800..1177 100 <- Minus
chr3R 8174801..8175059 541..799 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:02 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 107..1084 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:21 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 107..1084 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:55:13 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 107..1084 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:07 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 107..1084 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:51 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..978 107..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:34 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..1177 1..1177 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:20 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..1177 1..1177 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:55:13 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..1177 1..1177 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:07 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 1..1177 1..1177 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:51 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
CG10038-RA 36..1212 1..1177 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:59 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12348987..12349364 800..1177 100 <- Minus
3R 12349422..12349680 541..799 100 <- Minus
3R 12349795..12349982 353..540 100 <- Minus
3R 12350195..12350310 237..352 100 <- Minus
3R 12350374..12350609 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:59 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12348987..12349364 800..1177 100 <- Minus
3R 12349422..12349680 541..799 100 <- Minus
3R 12349795..12349982 353..540 100 <- Minus
3R 12350195..12350310 237..352 100 <- Minus
3R 12350374..12350609 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:59 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12348987..12349364 800..1177 100 <- Minus
3R 12349422..12349680 541..799 100 <- Minus
3R 12349795..12349982 353..540 100 <- Minus
3R 12350195..12350310 237..352 100 <- Minus
3R 12350374..12350609 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:55:13 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8175517..8175704 353..540 100 <- Minus
arm_3R 8175917..8176032 237..352 100 <- Minus
arm_3R 8174709..8175086 800..1177 100 <- Minus
arm_3R 8175144..8175402 541..799 100 <- Minus
arm_3R 8176096..8176331 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:04 Download gff for LD19518.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12089818..12090195 800..1177 100 <- Minus
3R 12090253..12090511 541..799 100 <- Minus
3R 12090626..12090813 353..540 100 <- Minus
3R 12091026..12091141 237..352 100 <- Minus
3R 12091205..12091440 1..236 100   Minus

LD19518.pep Sequence

Translation from 106 to 1083

> LD19518.pep
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKK*

LD19518.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17730-PA 308 GF17730-PA 1..308 17..325 1288 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17143-PA 324 GG17143-PA 2..324 3..325 1668 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15399-PA 328 GH15399-PA 1..323 1..321 984 56 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 325 CG10038-PA 1..325 1..325 1704 100 Plus
CG10038-PB 309 CG10038-PB 1..309 17..325 1620 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22459-PA 311 GI22459-PA 2..309 20..325 991 57.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21558-PA 308 GL21558-PA 4..308 21..325 1281 74.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10025-PB 308 GA10025-PB 4..308 21..325 1282 74.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26026-PA 325 GM26026-PA 1..325 1..325 1729 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20584-PA 309 GD20584-PA 1..309 17..325 1626 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10059-PA 312 GJ10059-PA 2..309 20..325 1050 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11976-PA 307 GK11976-PA 5..303 23..321 1065 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24534-PA 309 GE24534-PA 1..309 17..325 1563 93.9 Plus

LD19518.hyp Sequence

Translation from 106 to 1083

> LD19518.hyp
MWSRLIQIFRPLRSFRMSHSPPPASNCEEALIQLKNFGYAFDGEGVLRKV
DPATGEPGKELFSYNVSDDAAENEKHYQKLANQIPEIVYALLEKNGLSRT
YIPFDQPPERSSFVFSQPAKLSQSKKLLVLIHGSGYVKAGQWARSLIINN
SLDHGTQLPYVRQAQKLGYDLLITNANDCTRFYNGKENPIKGVNTSVEHV
KYVWKNIVLPAKPESVAIVAHSYGGSLTLDLVERFPDFFKESVFAIAFTD
AAMGSPQAKNKEYLCDVACDWVASNTPLDTPVSQSKSSIRRISAGHTKHE
WTSYSAIDSVFKFIEEKYEQRANKK*

LD19518.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10038-PA 325 CG10038-PA 1..325 1..325 1704 100 Plus
CG10038-PB 309 CG10038-PB 1..309 17..325 1620 100 Plus