Clone LD19544 Report

Search the DGRC for LD19544

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:195
Well:44
Vector:pBS SK-
Associated Gene/TranscriptCG2608-RA
Protein status:LD19544.pep: gold
Preliminary Size:1566
Sequenced Size:1461

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2608 2001-10-10 Blastp of sequenced clone
CG2608 2003-01-01 Sim4 clustering to Release 3
CG2608 2008-04-29 Release 5.5 accounting
CG2608 2008-08-15 Release 5.9 accounting
CG2608 2008-12-18 5.12 accounting

Clone Sequence Records

LD19544.complete Sequence

1461 bp (1461 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061268

> LD19544.complete
AAGCACCGGTAGTCAATATAATTATAATTACATTAAACCACCTAAAACAA
GCTGATCAACCGCAATCAAACATCTCAACGGGATAATAATAAACGCCAGA
GAGTGGCGCACATCCGCCAATTGCTCAACATTAAGCGAGGAAAACACGGC
GGAAAAATGGATCTGCTCGACTCAATACTCAACGCCATGGATGCGCCGCC
TGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAGCGCGAAATGT
TAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCGATTCCGAAAA
TATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACAGGCGATGCAT
CGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATCCACGAAGTAG
CCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGAGGATGTGGAC
CGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCGAGGATGAGGT
CACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATAGCCAAGGAGT
ACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAGTGACAAAGAA
GCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACATCCACATCAGC
GGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTACAAGGCCAAGT
ATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGCCCGTAAGACG
GAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATAAGAAGGATGT
GCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAAAAGCGTCTGC
GATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGCGCAAGAGGCA
ACCACATCCACAGAGGACCCATGAGTCGCCTGTGACCCAATTAGTATACA
GATAGCTCACTTAATGCAAGACTGTCGCAACCAAAAAAAAGGATTATACT
TCTTAAATCAGAATCAGAGAATCAGACATGACATGCTCGTCTTGTTCGCA
AACTCCTGCTCGATAACATCGACAATATTTGACAAAACAGAGCAGTAATC
ATCTTCAGGGAGCCAAAGATTTTTAAATTTATAGTATTCATACTATGTTT
TTGCCCACATTAATCGTATTTGGTAATAGGCTTGATACTAATTTTTATCT
TAGGTTAGCCCCATTAAATTAAATGCCCTTTTTTTTTGAGTAATGACAGC
CTTGTATCGAGTGAGATTAGTTTTGTTGATTCAGATTAGTCACATGAAAG
GTCTCTGACTGCCATGTAAATCATAAGTAATAAGCAATTTCATTTGTTGG
CCAATTAAGATCCGAAAGTTGTACATGTTTTAAGCAAGTTATGTGTCCGT
AGCAGAGTCCGAATCGCAATATCTATTTATATAATAAAAACCTAAAAAAA
AAAAAAAAAAA

LD19544.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-RA 1514 CG2608-RA 54..1507 1..1454 7270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20644480..20645825 105..1443 6560 99.3 Plus
chr2L 23010047 chr2L 20644293..20644398 1..106 530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20646043..20647392 105..1454 6750 100 Plus
2L 23513712 2L 20645856..20645961 1..106 530 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20646043..20647392 105..1454 6750 100 Plus
2L 23513712 2L 20645856..20645961 1..106 530 100 Plus
Blast to na_te.dros performed 2019-03-16 10:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6880 859..931 119 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2910..2962 859..912 114 70.4 Plus

LD19544.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:44:54 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20644293..20644397 1..105 100 -> Plus
chr2L 20644481..20645825 106..1443 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:03 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 157..924 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:27 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 157..924 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:03:19 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 157..924 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:16 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 157..924 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:27 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 1..768 157..924 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:37 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 33..1475 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:27 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 31..1473 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:19 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 35..1477 1..1443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:16 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 33..1475 1..1443 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:27 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG2608-RA 35..1477 1..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:54 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20645856..20645960 1..105 100 -> Plus
2L 20646044..20647381 106..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:54 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20645856..20645960 1..105 100 -> Plus
2L 20646044..20647381 106..1443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:54 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20645856..20645960 1..105 100 -> Plus
2L 20646044..20647381 106..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:19 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20645856..20645960 1..105 100 -> Plus
arm_2L 20646044..20647381 106..1443 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:57 Download gff for LD19544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20646044..20647381 106..1443 100   Plus
2L 20645856..20645960 1..105 100 -> Plus

LD19544.pep Sequence

Translation from 156 to 923

> LD19544.pep
MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYV
DERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRH
SVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEAS
TSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTET
NQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATT
STEDP*

LD19544.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15346-PA 251 GF15346-PA 1..251 1..255 1066 84.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21242-PA 255 GG21242-PA 1..255 1..255 1321 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10873-PA 249 GH10873-PA 1..231 1..233 1044 82 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-PA 255 CG2608-PA 1..255 1..255 1290 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18247-PA 260 GI18247-PA 1..236 1..233 1026 84.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18511-PA 266 GL18511-PA 1..231 1..232 1043 86.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15399-PA 267 GA15399-PA 1..232 1..232 1053 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23358-PA 255 GM23358-PA 1..255 1..255 1326 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24270-PA 254 GD24270-PA 1..254 1..255 1062 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22963-PA 260 GJ22963-PA 1..250 1..251 1004 79.1 Plus
Dvir\GJ16745-PA 890 GJ16745-PA 1..290 1..255 714 51.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15049-PA 258 GK15049-PA 1..236 1..233 1071 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13315-PA 255 GE13315-PA 1..255 1..255 1319 96.9 Plus

LD19544.hyp Sequence

Translation from 156 to 923

> LD19544.hyp
MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYV
DERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRH
SVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEAS
TSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTET
NQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATT
STEDP*

LD19544.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2608-PA 255 CG2608-PA 1..255 1..255 1290 100 Plus