Clone LD19713 Report

Search the DGRC for LD19713

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:197
Well:13
Vector:pBS SK-
Associated Gene/TranscriptMcm6-RA
Protein status:LD19713.pep: gold
Sequenced Size:2756

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4039 2007-09-25 DGC5 pick
Mcm6 2008-04-29 Picked prior to 5.5

Clone Sequence Records

LD19713.complete Sequence

2756 bp assembled on 2009-07-29

GenBank Submission: BT088975.1

> LD19713.complete
CAAGAAACGAAAGCAATCTCGGAATTTAGCGCGCAATTCACCAGTTTGAA
GCAAGAAGTGACCCAAAATGGATGTGGCAGATGCTCAGGTTGGCCAGCTG
CGCGTAAAAGACGAGGTGGGCATTCGGGCCCAGAAGTTGTTTCAGGATTT
CCTCGAGGAATTCAAGGAGGATGGCGAGATCAAGTACACGCGCCCAGCCG
CCAGCTTGGAATCCCCGGATCGCTGCACCCTGGAGGTCAGCTTCGAGGAT
GTGGAGAAATACGATCAGAATCTGGCCACCGCCATTATCGAGGAGTACTA
CCACATCTATCCGTTCCTTTGCCAATCCGTTTCGAACTACGTTAAGGACC
GGATTGGACTGAAGACCCAGAAGGATTGCTATGTGGCCTTCACGGAGGTG
CCGACGCGTCACAAGGTTCGCGATCTGACCACCTCCAAAATCGGCACCCT
CATCCGCATCTCCGGCCAGGTGGTGCGCACCCATCCCGTACATCCGGAGC
TTGTTTCCGGCGTCTTCATGTGCCTCGATTGCCAGACGGAAATTCGGAAC
GTAGAGCAGCAGTTCAAGTTCACCAATCCCACCATTTGCCGCAATCCCGT
GTGCTCCAATCGCAAGCGTTTCATGCTGGATGTGGAGAAGAGTCTGTTCT
TGGACTTTCAAAAGATTCGCATCCAGGAGACGCAAGCCGAGCTGCCGCGT
GGCTGTATTCCCCGCGCGGTGGAGATTATCCTGCGCTCGGAGCTGGTGGA
GACCGTTCAGGCTGGCGATCGCTATGATTTCACGGGCACTCTGATTGTGG
TGCCCGATGTGAGTGTCCTGGCCGGAGTGGGCACACGGGCGGAGAACAGT
TCACGCCACAAGCCCGGCGAGGGCATGGATGGCGTCACTGGCCTAAAGGC
ACTGGGCATGCGAGAGCTCAACTATCGGATGGCCTTCCTTGCCTGCAGTG
TTCAGGCAACGACAGCACGTTTTGGCGGCACCGATCTGCCCATGTCGGAG
GTGACAGCCGAGGATATGAAGAAGCAGATGACAGATGCCGAGTGGCACAA
GATCTATGAGATGTCCAAGGATCGCAATCTCTACCAGAATCTAATTAGCA
GCCTCTTTCCCTCGATCTACGGCAACGATGAGGTCAAGCGGGGCATTCTT
CTGCAGCAATTCGGTGGCGTTGCGAAGACCACCACCGAAAAGACATCGCT
TCGTGGCGACATCAATGTGTGCATCGTTGGCGATCCCAGCACGGCCAAGT
CACAGTTCCTCAAGCAGGTATCCGACTTCTCGCCGCGTGCGATCTACACC
TCGGGCAAGGCATCCTCGGCAGCGGGCTTAACCGCTGCGGTTGTGCGCGA
CGAGGAGTCCTTTGACTTTGTCATCGAGGCGGGCGCCCTCATGTTGGCCG
ACAATGGCATTTGCTGCATTGACGAGTTCGATAAGATGGATCAGCGCGAT
CAGGTGGCCATTCACGAGGCCATGGAACAGCAGACCATATCGATTGCACG
CGCCGGCGTACGAGCCACACTCAATGCGCGCACTTCGATTCTGGCCGCCG
CCAATCCCATTAATGGTCGCTACGATCGCTCCAAGAGTTTGCAACAAAAT
ATTCAGCTATCGGCACCGATTATGTCGCGATTCGATCTGTTCTTCATTCT
CGTGGACGAATGCAATGAGGTGGTGGACTATGCCATTGCTCGCAAGATCG
TTGATCTGCACTCGAACATCGAGGAGTCCGTGGAGCGGGCATATACGCGC
GAAGAGGTCCTTCGCTATGTGACATTTGCGCGGCAATTTAAGCCGGTTAT
TAGCCAGGAGGCCGGACACATGCTGGTCGAGAACTATGGCCATTTGAGGC
AGCGCGATACGGGCACGTCGGGCAGGAGCACCTGGAGGATAACGGTGCGT
CAGCTGGAGTCCATGATTCGACTGAGCGAGGCCATGGCCAAGCTGGAGTG
CTCGAATCGCGTGCTGGAGCGACACGTCAAGGAGGCCTTCCGTTTGCTCA
ACAAGTCCATCATTCGCGTGGAGCAACCGGATATTCATTTAGATGACGAC
GAGGGTCTGGACATGGACGATGGCATTCAGCACGACATCGACATGGAGAA
CAATGGAGCAGCGGCCAATGTGGATGAGAACAATGGTATGGACACATCCG
CCAGCGGCGCCGTGCAGAAGAAGAAGTTCACGCTTTCGTTCGAGGATTAC
AAGAATCTGTCCACCATGCTGGTGTTGCATATGCGCGCCGAGGAGGCGCG
CTGCGAGGTGGAGGGCAACGATACGGGCATCAAGCGCAGCAATGTGGTCA
CCTGGTATCTGGAGCAGGTGGCGGACCAAATCGAATCCGAGGATGAGTTA
ATTTCTCGCAAAAATCTCATCGAGAAGCTTATCGATCGCCTCATCTATCA
CGATCAGGTCATTATTCCGCTCAAGACATCCACGCTGAAGCCGAGAATTC
AGGTACAAAAGGATTTCGTGGAGGAGGACGATCCCCTGCTGGTGGTGCAT
CCCAACTACGTTGTGGAGTGATCCCAGCCGATCAACAGTTTATTACTATG
CCCTAAATCTAGCTGGTTAAGTTTCTGTTTCCGCGTCTTGCTTTTTTTTG
CTCACCCAAACAAACAATGTATTTAGGCAGTAAGTTTATAGTTTAGAGAC
ATTATTGAAATCCATTAAGGATTTCTTGGTTCAGTTACGTTCCAAATCAT
TCATGTTTTCGCCGAAATAAACGTTCATCTCAAGATTCAAAAAAAAAAAA
AAAAAA

LD19713.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm6-RA 2788 Mcm6-RA 51..2788 1..2738 13690 100 Plus
Mcm5-RA 2496 Mcm5-RA 1500..1543 1454..1497 190 95.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6566611..6569348 1..2738 13405 99.3 Plus
chr3R 27901430 chr3R 6615651..6615695 1454..1498 195 95.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6674439..6677177 1..2739 13695 100 Plus
3R 32079331 3R 10790133..10790176 1454..1497 190 95.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6682537..6685275 1..2739 13695 100 Plus
3R 31820162 3R 10530964..10531007 1454..1497 190 95.4 Plus
Blast to na_te.dros performed on 2019-03-16 09:49:10 has no hits.

LD19713.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:18 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6566611..6569348 1..2738 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:07 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 1..2454 68..2521 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:07:38 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 1..2454 68..2521 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:47:35 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 1..2454 68..2521 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:12 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 1..2454 68..2521 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-29 09:39:46 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 51..2784 1..2734 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:07:38 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 51..2784 1..2734 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:47:35 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 51..2788 1..2738 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:12 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm6-RA 53..2790 1..2738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:18 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
X 6674439..6677176 1..2738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:18 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
X 6674439..6677176 1..2738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:18 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
X 6674439..6677176 1..2738 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:47:35 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6568472..6571209 1..2738 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:59:54 Download gff for LD19713.complete
Subject Subject Range Query Range Percent Splice Strand
X 6682537..6685274 1..2738 100   Plus

LD19713.pep Sequence

Translation from 67 to 2520

> LD19713.pep
MDVADAQVGQLRVKDEVGIRAQKLFQDFLEEFKEDGEIKYTRPAASLESP
DRCTLEVSFEDVEKYDQNLATAIIEEYYHIYPFLCQSVSNYVKDRIGLKT
QKDCYVAFTEVPTRHKVRDLTTSKIGTLIRISGQVVRTHPVHPELVSGVF
MCLDCQTEIRNVEQQFKFTNPTICRNPVCSNRKRFMLDVEKSLFLDFQKI
RIQETQAELPRGCIPRAVEIILRSELVETVQAGDRYDFTGTLIVVPDVSV
LAGVGTRAENSSRHKPGEGMDGVTGLKALGMRELNYRMAFLACSVQATTA
RFGGTDLPMSEVTAEDMKKQMTDAEWHKIYEMSKDRNLYQNLISSLFPSI
YGNDEVKRGILLQQFGGVAKTTTEKTSLRGDINVCIVGDPSTAKSQFLKQ
VSDFSPRAIYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGICC
IDEFDKMDQRDQVAIHEAMEQQTISIARAGVRATLNARTSILAAANPING
RYDRSKSLQQNIQLSAPIMSRFDLFFILVDECNEVVDYAIARKIVDLHSN
IEESVERAYTREEVLRYVTFARQFKPVISQEAGHMLVENYGHLRQRDTGT
SGRSTWRITVRQLESMIRLSEAMAKLECSNRVLERHVKEAFRLLNKSIIR
VEQPDIHLDDDEGLDMDDGIQHDIDMENNGAAANVDENNGMDTSASGAVQ
KKKFTLSFEDYKNLSTMLVLHMRAEEARCEVEGNDTGIKRSNVVTWYLEQ
VADQIESEDELISRKNLIEKLIDRLIYHDQVIIPLKTSTLKPRIQVQKDF
VEEDDPLLVVHPNYVVE*

LD19713.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21421-PA 820 GF21421-PA 1..820 1..817 4154 94.6 Plus
Dana\GF18817-PA 887 GF18817-PA 184..784 25..653 823 32.5 Plus
Dana\GF13675-PA 865 GF13675-PA 206..849 46..732 806 32.1 Plus
Dana\GF17903-PA 733 GF17903-PA 31..648 22..649 797 32.8 Plus
Dana\GF21337-PA 817 GF21337-PA 90..631 99..632 670 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19603-PA 817 GG19603-PA 1..817 1..817 4260 97.3 Plus
Dere\GG24143-PA 887 GG24143-PA 184..784 25..653 817 32.3 Plus
Dere\GG10740-PA 866 GG10740-PA 205..850 46..732 800 32.1 Plus
Dere\GG17694-PA 733 GG17694-PA 31..648 22..649 792 33.1 Plus
Dere\GG14355-PA 720 GG14355-PA 16..640 28..647 731 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24715-PA 820 GH24715-PA 1..820 1..817 3986 92.2 Plus
Dgri\GH14181-PA 889 GH14181-PA 187..787 25..653 823 32.2 Plus
Dgri\GH19815-PA 863 GH19815-PA 273..847 117..732 817 34.1 Plus
Dgri\GH18059-PA 734 GH18059-PA 32..649 22..649 784 32.6 Plus
Dgri\GH15332-PA 720 GH15332-PA 16..640 28..647 741 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm6-PA 817 CG4039-PA 1..817 1..817 4170 100 Plus
Mcm2-PA 887 CG7538-PA 184..784 25..653 804 31.8 Plus
dpa-PB 866 CG1616-PB 182..850 26..732 797 31.4 Plus
dpa-PA 866 CG1616-PA 182..850 26..732 797 31.4 Plus
Mcm5-PA 733 CG4082-PA 22..648 5..649 782 32.4 Plus
Mcm7-PA 720 CG4978-PA 16..710 28..719 755 30.1 Plus
Mcm3-PB 818 CG4206-PB 2..656 6..654 670 29.9 Plus
Mcm3-PA 819 CG4206-PA 2..657 6..654 664 29.7 Plus
rec-PB 885 CG31293-PB 246..792 117..648 355 23.3 Plus
rec-PA 885 CG31293-PA 246..792 117..648 355 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21813-PA 819 GI21813-PA 1..819 1..817 4006 92.3 Plus
Dmoj\GI22091-PA 884 GI22091-PA 183..782 25..653 822 31.9 Plus
Dmoj\GI20404-PA 863 GI20404-PA 273..847 117..732 811 33.8 Plus
Dmoj\GI23737-PA 734 GI23737-PA 32..649 22..649 787 33.3 Plus
Dmoj\GI12937-PA 720 GI12937-PA 16..640 28..647 729 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13346-PA 624 GL13346-PA 1..622 1..658 3172 90.4 Plus
Dper\GL20116-PA 863 GL20116-PA 204..847 46..732 802 31.7 Plus
Dper\GL21915-PA 707 GL21915-PA 32..649 22..649 794 33.4 Plus
Dper\GL14679-PA 716 GL14679-PA 90..631 99..632 680 31.5 Plus
Dper\GL23360-PA 422 GL23360-PA 3..319 348..653 658 42.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17904-PA 815 GA17904-PA 1..815 1..817 4011 92.8 Plus
Dpse\GA20424-PA 886 GA20424-PA 183..783 25..653 819 32.2 Plus
Dpse\GA14047-PA 866 GA14047-PA 207..850 46..732 800 31.7 Plus
Dpse\GA17943-PA 560 GA17943-PA 34..475 185..649 741 37.9 Plus
Dpse\GA18569-PA 720 GA18569-PA 16..650 28..657 726 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12510-PA 817 GM12510-PA 1..817 1..817 4343 98.9 Plus
Dsec\GM23713-PA 887 GM23713-PA 184..784 25..653 820 32.3 Plus
Dsec\GM20786-PA 866 GM20786-PA 205..850 46..732 801 32.1 Plus
Dsec\GM23897-PA 733 GM23897-PA 31..648 22..649 791 33.2 Plus
Dsec\GM12401-PA 820 GM12401-PA 284..632 331..632 606 39.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16811-PA 817 GD16811-PA 1..817 1..817 4352 99.1 Plus
Dsim\GD18709-PA 733 GD18709-PA 31..648 22..649 791 33.2 Plus
Dsim\GD14135-PA 607 GD14135-PA 218..527 337..647 609 44.4 Plus
Dsim\GD20327-PA 883 GD20327-PA 247..637 117..553 326 24.9 Plus
Dsim\GD18528-PA 311 GD18528-PA 1..208 457..653 323 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16986-PA 824 GJ16986-PA 1..824 1..817 3976 92.2 Plus
Dvir\GJ24206-PA 885 GJ24206-PA 183..783 25..653 820 32.4 Plus
Dvir\GJ20076-PA 864 GJ20076-PA 205..848 46..732 807 32.1 Plus
Dvir\GJ10583-PA 734 GJ10583-PA 32..649 22..649 798 33.2 Plus
Dvir\GJ13078-PA 720 GJ13078-PA 16..640 28..647 733 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15438-PA 821 GK15438-PA 1..821 1..817 4002 91.8 Plus
Dwil\GK11732-PA 884 GK11732-PA 181..781 25..653 824 33 Plus
Dwil\GK10701-PA 871 GK10701-PA 212..859 46..736 801 31.9 Plus
Dwil\GK13898-PA 734 GK13898-PA 32..649 22..649 793 32.6 Plus
Dwil\GK16745-PA 720 GK16745-PA 136..640 106..647 716 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16763-PA 817 GE16763-PA 1..817 1..817 4251 97.2 Plus
Dyak\GE25859-PA 887 GE25859-PA 184..784 25..653 816 32.3 Plus
Dyak\GE23926-PA 866 GE23926-PA 205..850 46..732 800 32.1 Plus
Dyak\GE26049-PA 733 GE26049-PA 31..648 22..649 797 33.6 Plus
Dyak\Mcm3-PA 821 GE16395-PA 90..631 99..632 678 31.8 Plus

LD19713.hyp Sequence

Translation from 67 to 2520

> LD19713.hyp
MDVADAQVGQLRVKDEVGIRAQKLFQDFLEEFKEDGEIKYTRPAASLESP
DRCTLEVSFEDVEKYDQNLATAIIEEYYHIYPFLCQSVSNYVKDRIGLKT
QKDCYVAFTEVPTRHKVRDLTTSKIGTLIRISGQVVRTHPVHPELVSGVF
MCLDCQTEIRNVEQQFKFTNPTICRNPVCSNRKRFMLDVEKSLFLDFQKI
RIQETQAELPRGCIPRAVEIILRSELVETVQAGDRYDFTGTLIVVPDVSV
LAGVGTRAENSSRHKPGEGMDGVTGLKALGMRELNYRMAFLACSVQATTA
RFGGTDLPMSEVTAEDMKKQMTDAEWHKIYEMSKDRNLYQNLISSLFPSI
YGNDEVKRGILLQQFGGVAKTTTEKTSLRGDINVCIVGDPSTAKSQFLKQ
VSDFSPRAIYTSGKASSAAGLTAAVVRDEESFDFVIEAGALMLADNGICC
IDEFDKMDQRDQVAIHEAMEQQTISIARAGVRATLNARTSILAAANPING
RYDRSKSLQQNIQLSAPIMSRFDLFFILVDECNEVVDYAIARKIVDLHSN
IEESVERAYTREEVLRYVTFARQFKPVISQEAGHMLVENYGHLRQRDTGT
SGRSTWRITVRQLESMIRLSEAMAKLECSNRVLERHVKEAFRLLNKSIIR
VEQPDIHLDDDEGLDMDDGIQHDIDMENNGAAANVDENNGMDTSASGAVQ
KKKFTLSFEDYKNLSTMLVLHMRAEEARCEVEGNDTGIKRSNVVTWYLEQ
VADQIESEDELISRKNLIEKLIDRLIYHDQVIIPLKTSTLKPRIQVQKDF
VEEDDPLLVVHPNYVVE*

LD19713.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm6-PA 817 CG4039-PA 1..817 1..817 4170 100 Plus
Mcm2-PA 887 CG7538-PA 184..784 25..653 804 31.8 Plus
dpa-PB 866 CG1616-PB 182..850 26..732 797 31.4 Plus
dpa-PA 866 CG1616-PA 182..850 26..732 797 31.4 Plus
Mcm5-PA 733 CG4082-PA 22..648 5..649 782 32.4 Plus