Clone LD19715 Report

Search the DGRC for LD19715

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:197
Well:15
Vector:pBS SK-
Associated Gene/TranscriptTwdlF-RA
Protein status:LD19715.pep: gold
Preliminary Size:1368
Sequenced Size:1237

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14639 2001-01-01 Release 2 assignment
CG14639 2001-10-10 Blastp of sequenced clone
CG14639 2003-01-01 Sim4 clustering to Release 3
TwdlF 2008-04-29 Release 5.5 accounting
TwdlF 2008-08-15 Release 5.9 accounting
TwdlF 2008-12-18 5.12 accounting

Clone Sequence Records

LD19715.complete Sequence

1237 bp (1237 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061275

> LD19715.complete
CAGCTCAGACAGTTCAAAGTGAAAATGAAGCAGTTCGTTGTTCTAATGTG
CCTGGTGGCCCTCACAGCAACAGCTCCTCAGGGATACAAGTACCAACCTC
AGCTGCCAGCCCTTCCCATTGGCAATCTTCGTCCTCTGACACCCATTTCG
TCAAGTGGAATATACGCAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGG
TGCTCAGCCCGCGATCGGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCA
TCGTTGCCGCTCCTGCTCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCA
CTCCCAAAGGAGACTTTCCTTACTGCTTCGCCCCAGCAAAACCTGATCAG
CACTGTGCAGCAGCAGCCTCAGCAAATCGTGTACCAGCAGCAACCGCAGC
AAGCCCTTCAGACCCAGTTCGTCCAGCGCCCCGCTATCGTTACCAAGGAC
ATTTACATCCACTCCGCCCCCGAGGAGAATGAGGAACTGCGGCAGGACGA
GCCACTTCTGGAGAATGTGCCCATCCGCAAGAACTACCGGATCGTCTTCA
TTAAAGCGCCTTCCCAGAATCTGAAATATACCGCCGCGGCCCTGAAGCGG
GCCCAGTCAAGCAACGAGGAAAAGACCGTCATCTACGTGCTCTCTAAAAA
GCCCGATCTCACTGAGATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGG
CCAAGGTTCAAAAGCCGGAGGTCTACTTCATTAAGTACAAGACCCAGGAA
GAGGCCCAGCGCGCCCAGCAGGAAATCCAGGCCCAGTACGACGCCTTGGG
AGGTGCAACCCACATTTCGGACGAGGGAGTGGCTCCCATCGCCAGCGTTT
CGAGTGGCTCCCTTAACCTGGGCAGCTTTGTGCCCCAGCACTCCCAAGCT
GGCCAAACCATCATCCACTCTCAGGCGCCAACCATTATCCAGCCACAGGG
TCAGCCCATTGTTCAGCTGCAGTCTATTAACCAGGGGGTCCAGGGGGTCC
AGCAGCAGAGCTCCTTTGTGCAGAAGTCCACCTCCTCATTCGCTCCCTCG
GCGCCATCAAGGAAGTATGTGCCGGCAAAGACTTTTTAAAAAGTTGTAGT
AAGAATCCTATCGCTTTCATTGTTTTATATCAACCATCATACTGTAGTAA
ATTTTAATTTATTTTTAATGCAAAAGTCGAAAGTCGAAAGAAATATAAAA
AAATTTAAATCGAAACCCAAAAAAAAAAAAAAAAAAA

LD19715.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-RA 1420 TwdlF-RA 163..1385 1..1223 6115 100 Plus
TwdlV-RA 1164 TwdlV-RA 621..703 712..794 250 86.7 Plus
TwdlY-RA 1030 TwdlY-RA 612..692 712..792 225 85.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 72865..74035 48..1218 5855 100 Plus
chr3R 27901430 chr3R 81043..81125 712..794 250 86.7 Plus
chr3R 27901430 chr3R 72759..72806 1..48 240 100 Plus
chrX 22417052 chrX 16625225..16625305 712..792 225 85.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4247143..4248318 48..1223 5880 100 Plus
3R 32079331 3R 4255322..4255404 712..794 250 86.7 Plus
3R 32079331 3R 4247037..4247084 1..48 240 100 Plus
X 23542271 X 16735562..16735642 712..792 225 85.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3987974..3989149 48..1223 5880 100 Plus
3R 31820162 3R 3996153..3996235 712..794 250 86.7 Plus
3R 31820162 3R 3987868..3987915 1..48 240 100 Plus
X 23527363 X 16743660..16743740 712..792 225 85.1 Plus
Blast to na_te.dros performed 2019-03-16 14:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9163..9225 341..401 130 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2393 357..402 113 71.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1626..1685 1158..1217 110 68.9 Plus

LD19715.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:38:39 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 72759..72806 1..48 100 -> Plus
chr3R 72866..74035 49..1218 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:10 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 25..1089 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:22 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 25..1089 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:00 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 25..1089 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:08 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 25..1089 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:50 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 1..1065 25..1089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:37 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 16..1233 1..1218 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:22 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 16..1233 1..1218 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:00 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 18..1235 1..1218 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:08 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 16..1233 1..1218 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:50 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlF-RA 18..1235 1..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:39 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4247037..4247084 1..48 100 -> Plus
3R 4247144..4248313 49..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:39 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4247037..4247084 1..48 100 -> Plus
3R 4247144..4248313 49..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:39 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4247037..4247084 1..48 100 -> Plus
3R 4247144..4248313 49..1218 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:00 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 72759..72806 1..48 100 -> Plus
arm_3R 72866..74035 49..1218 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:05 Download gff for LD19715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3987975..3989144 49..1218 100   Plus
3R 3987868..3987915 1..48 100 -> Plus

LD19715.hyp Sequence

Translation from 0 to 1088

> LD19715.hyp
QLRQFKVKMKQFVVLMCLVALTATAPQGYKYQPQLPALPIGNLRPLTPIS
SSGIYASGAVPSFPQAGAQPAIGVQPAIQAVQTIVAAPAPAPAPAPLSIS
LPKETFLTASPQQNLISTVQQQPQQIVYQQQPQQALQTQFVQRPAIVTKD
IYIHSAPEENEELRQDEPLLENVPIRKNYRIVFIKAPSQNLKYTAAALKR
AQSSNEEKTVIYVLSKKPDLTEIQQQLQVTQSEAKVQKPEVYFIKYKTQE
EAQRAQQEIQAQYDALGGATHISDEGVAPIASVSSGSLNLGSFVPQHSQA
GQTIIHSQAPTIIQPQGQPIVQLQSINQGVQGVQQQSSFVQKSTSSFAPS
APSRKYVPAKTF*

LD19715.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-PA 354 CG14639-PA 1..354 9..362 1770 100 Plus
TwdlG-PC 278 CG14643-PC 3..246 12..283 424 41.2 Plus
TwdlG-PB 278 CG14643-PB 3..246 12..283 424 41.2 Plus
TwdlG-PA 278 CG14643-PA 3..246 12..283 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..233 9..304 374 37.7 Plus

LD19715.pep Sequence

Translation from 24 to 1088

> LD19715.pep
MKQFVVLMCLVALTATAPQGYKYQPQLPALPIGNLRPLTPISSSGIYASG
AVPSFPQAGAQPAIGVQPAIQAVQTIVAAPAPAPAPAPLSISLPKETFLT
ASPQQNLISTVQQQPQQIVYQQQPQQALQTQFVQRPAIVTKDIYIHSAPE
ENEELRQDEPLLENVPIRKNYRIVFIKAPSQNLKYTAAALKRAQSSNEEK
TVIYVLSKKPDLTEIQQQLQVTQSEAKVQKPEVYFIKYKTQEEAQRAQQE
IQAQYDALGGATHISDEGVAPIASVSSGSLNLGSFVPQHSQAGQTIIHSQ
APTIIQPQGQPIVQLQSINQGVQGVQQQSSFVQKSTSSFAPSAPSRKYVP
AKTF*

LD19715.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19934-PA 278 GF19934-PA 26..277 85..354 808 72 Plus
Dana\GF16822-PA 238 GF16822-PA 3..205 74..275 341 44.3 Plus
Dana\GF17860-PA 309 GF17860-PA 106..259 121..280 328 49.1 Plus
Dana\GF18571-PA 234 GF18571-PA 67..206 139..281 295 44.1 Plus
Dana\GF18197-PA 263 GF18197-PA 89..245 137..305 284 49.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12219-PA 347 GG12219-PA 1..346 1..354 1172 80.8 Plus
Dere\GG16788-PA 301 GG16788-PA 114..255 134..281 327 50.3 Plus
Dere\GG11741-PA 269 GG11741-PA 62..237 106..275 326 47.8 Plus
Dere\GG12175-PA 244 GG12175-PA 74..209 139..277 287 43.2 Plus
Dere\GG12230-PA 252 GG12230-PA 76..238 137..301 287 47.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19046-PA 379 GH19046-PA 98..254 135..291 645 79.1 Plus
Dgri\GH21845-PA 288 GH21845-PA 1..246 1..281 366 39.9 Plus
Dgri\GH14248-PA 305 GH14248-PA 127..265 138..281 327 49.3 Plus
Dgri\GH19057-PA 287 GH19057-PA 83..216 137..275 303 51.1 Plus
Dgri\GH18874-PA 229 GH18874-PA 70..204 140..277 294 45.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlF-PA 354 CG14639-PA 1..354 1..354 1770 100 Plus
TwdlG-PC 278 CG14643-PC 3..246 4..275 424 41.2 Plus
TwdlG-PB 278 CG14643-PB 3..246 4..275 424 41.2 Plus
TwdlG-PA 278 CG14643-PA 3..246 4..275 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..233 1..296 374 37.7 Plus
TwdlW-PA 308 CG4060-PA 66..266 82..281 341 41.5 Plus
TwdlQ-PA 245 CG14250-PA 45..210 109..277 317 41.5 Plus
Twdlalpha-PA 388 CG32574-PA 1..304 1..275 297 32.7 Plus
TwdlX-PA 346 CG32571-PA 143..346 135..347 289 38.4 Plus
TwdlY-PA 247 CG32570-PA 77..214 138..281 271 46.3 Plus
TwdlZ-PB 210 CG32569-PB 34..205 138..307 269 40.6 Plus
TwdlD-PA 256 CG14243-PA 81..214 141..277 250 39.4 Plus
Tb-PA 283 CG5480-PA 90..278 141..350 248 33.3 Plus
TwdlH-PA 241 CG31080-PA 4..214 5..277 244 27.5 Plus
TwdlJ-PB 274 CG5471-PB 1..266 1..351 236 29.2 Plus
TwdlB-PA 286 CG6478-PA 122..280 137..305 236 36.3 Plus
TwdlL-PB 279 CG6447-PB 116..274 137..305 233 36.3 Plus
TwdlL-PA 285 CG6447-PA 122..280 137..305 233 36.3 Plus
TwdlP-PA 220 CG14240-PA 54..202 137..288 232 36.4 Plus
TwdlM-PA 288 CG5468-PA 126..284 137..305 231 36.6 Plus
TwdlN-PA 309 CG5476-PA 143..301 137..305 231 36.6 Plus
TwdlR-PA 325 CG31081-PA 63..244 134..345 225 35.7 Plus
TwdlK-PA 247 CG6460-PA 1..219 1..277 223 28.2 Plus
TwdlO-PA 229 CG6452-PA 66..195 151..279 214 37.1 Plus
TwdlT-PA 286 CG5812-PA 130..231 138..244 206 47.7 Plus
TwdlC-PA 360 CG14254-PA 14..313 27..353 201 27.3 Plus
TwdlE-PA 197 CG14534-PA 56..160 134..243 187 42.7 Plus
Twdlbeta-PA 198 CG8986-PA 68..174 137..249 184 41.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10847-PA 372 GI10847-PA 144..371 132..353 674 66.5 Plus
Dmoj\GI21932-PA 273 GI21932-PA 94..233 138..281 362 54.9 Plus
Dmoj\GI23141-PA 328 GI23141-PA 133..271 138..281 329 49.3 Plus
Dmoj\GI10848-PA 268 GI10848-PA 85..217 138..275 302 51.4 Plus
Dmoj\GI24731-PA 233 GI24731-PA 73..211 136..277 283 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12309-PA 437 GL12309-PA 1..189 1..176 388 56.7 Plus
Dper\GL12334-PA 296 GL12334-PA 130..264 138..275 353 54.3 Plus
Dper\GL27212-PA 312 GL27212-PA 126..264 138..281 319 49.7 Plus
Dper\GL24435-PA 251 GL24435-PA 82..223 139..281 295 42.9 Plus
Dper\GL12309-PA 437 GL12309-PA 263..393 137..275 293 56.1 Plus
Dper\GL23102-PA 264 GL23102-PA 2..237 3..277 278 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13137-PA 353 GA13137-PA 1..352 1..354 944 63.5 Plus
Dpse\GA13142-PA 296 GA13142-PA 130..264 138..275 353 54.3 Plus
Dpse\GA17925-PA 314 GA17925-PA 127..265 138..281 320 49.7 Plus
Dpse\GA13139-PA 256 GA13139-PA 1..212 1..275 307 40.4 Plus
Dpse\GA16998-PA 344 GA16998-PA 1..344 1..347 302 32.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10738-PA 357 GM10738-PA 1..357 1..354 1421 94.7 Plus
Dsec\GM15381-PA 306 GM15381-PA 110..264 121..281 331 48.1 Plus
Dsec\GM10719-PA 281 GM10719-PA 2..249 3..275 329 38.7 Plus
Dsec\GM10172-PA 244 GM10172-PA 74..210 139..278 285 42.9 Plus
Dsec\GM10739-PA 254 GM10739-PA 80..236 137..296 285 48.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19709-PA 357 GD19709-PA 1..357 1..354 1397 94.4 Plus
Dsim\GD19694-PA 278 GD19694-PA 2..246 3..275 344 41 Plus
Dsim\GD20247-PA 303 GD20247-PA 112..261 121..281 298 46.3 Plus
Dsim\GD18124-PA 245 GD18124-PA 75..211 139..278 285 42.9 Plus
Dsim\GD19711-PA 255 GD19711-PA 81..237 137..296 285 48.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14454-PA 344 GJ14454-PA 1..343 1..353 780 54.9 Plus
Dvir\GJ14291-PA 281 GJ14291-PA 102..267 120..295 364 49.4 Plus
Dvir\GJ10443-PA 300 GJ10443-PA 124..262 138..281 326 48.6 Plus
Dvir\GJ14557-PA 226 GJ14557-PA 69..204 139..277 315 46.8 Plus
Dvir\GJ19305-PA 387 GJ19305-PA 163..337 136..323 298 40.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22518-PA 337 GK22518-PA 1..286 1..285 831 64.1 Plus
Dwil\GK22650-PA 292 GK22650-PA 70..272 106..284 347 45.4 Plus
Dwil\GK10882-PA 315 GK10882-PA 131..269 138..281 331 50 Plus
Dwil\GK22519-PA 265 GK22519-PA 1..221 1..275 316 42.2 Plus
Dwil\GK13956-PA 242 GK13956-PA 74..208 140..277 296 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25399-PA 334 GE25399-PA 1..334 1..354 1237 82.1 Plus
Dyak\GE24178-PA 269 GE24178-PA 81..222 134..281 325 50.3 Plus
Dyak\GE10619-PA 245 GE10619-PA 75..211 139..278 288 42.9 Plus
Dyak\GE17617-PA 351 GE17617-PA 148..283 135..275 282 46.6 Plus
Dyak\GE25400-PA 250 GE25400-PA 77..206 138..275 270 52.2 Plus