![]() | BDGP Sequence Production Resources |
Search the DGRC for LD19982
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 199 |
Well: | 82 |
Vector: | pBS SK- |
Associated Gene/Transcript | nudE-RA |
Protein status: | LD19982.pep: gold |
Preliminary Size: | 1915 |
Sequenced Size: | 1976 |
Gene | Date | Evidence |
---|---|---|
CG8104 | 2001-01-01 | Release 2 assignment |
CG8104 | 2001-10-10 | Blastp of sequenced clone |
CG8104 | 2003-01-01 | Sim4 clustering to Release 3 |
nudE | 2008-04-29 | Release 5.5 accounting |
nudE | 2008-08-15 | Release 5.9 accounting |
nudE | 2008-12-18 | 5.12 accounting |
1976 bp (1976 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061280
> LD19982.complete GCGTTTTTGGAGTAGTGGTAAATTTTTACGAGCATAACTATTTACACTGA TTTTATGTAAATAAAACAAACAAAACGTAGCAAAATTAAGTGCAAAGTTC TATTCACCACCCCCAACACACAAAACAAAAAAAAAGTAAAACTACGACTT GAACAACAACTGTGTTTTGGCATTTTAATCACAGCAATTAAAAACAAAGC AGCCAAAAAACACGAATAAATAACCCAAACAGTAATAGACCAACCGTAGT ACATAGCATTGTTCAGAAATTAAAAGTTAAATCAATTCGAACGAACGAAA TTACAAACCCATTTTGACCGCCGATTAGTACACAAAAACCAGAAAAAGGA GTTAGCAGCTAAGGAAAATTTGCAGAAATGGAGTCGCCCCCGATGTTCAA TAGTGTGGAAGATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACC ACAAAGAGTGGACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAG TCCCGCGAAATGGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAG TATAATCAAAGATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACG AGTCTCTCAAGCTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATG GAGAAACAGCTGGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTA CCTGCGGCAGCTGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCA TACTTAACGAAAGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTAC GAGAAGAACGCCCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCA GGAAAAACTACAGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGC TGAACGTCAAGTCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCC ACGGCAAACGACACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTC GCTGCCAAATGGTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATG CTGTCGCCACAAGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGT TTAGTTAATAGAAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGG AGACGAAACTGAAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGA CACCGCTCCTCCCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTG CTTCTCGCTGGATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATCCA CAAACCCCAAATCCGAAACCCAATCACCTAGGGCGGGATACTGTTCAGTT GGCTTTACGTTTACGTTACGTTACTTTAATGTTACTGTTCGCATTAATTA AGTTTCTGCTGCCTCTTTATTTATTTGAACTAAAATGACTTTGTATAAAC CACTTGCGATATTATGAATTACACAACAGTTGATGTTGTTGTTTCGAGCC CAACATATATAACATGCCTTAGTACGAATTAAGTGTATACCTAAGCTATA AGTACCCACTCGGTTCACTTTTGACTTGAATTGTTAACTCGAACGCAATT GTTTTGGCATACAATGTGTTTAGCGACTAAGTTCAAAGTTGATCAACCAG CAAAACAAGCGAAGAAGCTCTGTCCAAGTATTATACTTCAAGCGGACAAC CAATACTCGTAGCGTTTAGGAAAAAGACAAGATCTAACCCGGGAAAAAAA ATTATTAAAATTATCGAAACGATCATCTAGTTATATTGTAACTATCCCCA GAGCTATTTTCTGTTTATATTTACCAGCGAATATAAATTTGTAAAAATGC AAAATATTGCTAACGGCAAACTGTATAAAGCATAACAAAACTCCAACGAA CAGGCAAACAAAATATATATATATATGTATGAATAAAGAGCAAAATAATT AGTTTAATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nudE.j | 2711 | nudE.j | 30..1992 | 1..1963 | 9800 | 99.9 | Plus |
nudE.k | 3335 | nudE.k | 562..1704 | 1..1143 | 5715 | 100 | Plus |
nudE-RB | 2916 | nudE-RB | 562..1704 | 1..1143 | 5715 | 100 | Plus |
nudE.k | 3335 | nudE.k | 1797..2616 | 1144..1963 | 4085 | 99.8 | Plus |
nudE-RB | 2916 | nudE-RB | 1797..2616 | 1144..1963 | 4085 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9893955..9894769 | 1144..1958 | 4060 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 9891530..9891890 | 99..459 | 1790 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 9892225..9892500 | 610..885 | 1380 | 100 | Plus |
chr3L | 24539361 | chr3L | 9892563..9892823 | 884..1144 | 1305 | 100 | Plus |
chr3L | 24539361 | chr3L | 9891957..9892110 | 458..611 | 770 | 100 | Plus |
chr3L | 24539361 | chr3L | 9891062..9891159 | 1..98 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9902151..9902970 | 1144..1963 | 4085 | 99.9 | Plus |
3L | 28110227 | 3L | 9899726..9900086 | 99..459 | 1805 | 100 | Plus |
3L | 28110227 | 3L | 9900421..9900696 | 610..885 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 9900759..9901019 | 884..1144 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 9900153..9900306 | 458..611 | 770 | 100 | Plus |
3L | 28110227 | 3L | 9899258..9899355 | 1..98 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9895251..9896070 | 1144..1963 | 4085 | 99.8 | Plus |
3L | 28103327 | 3L | 9892826..9893186 | 99..459 | 1805 | 100 | Plus |
3L | 28103327 | 3L | 9893521..9893796 | 610..885 | 1380 | 100 | Plus |
3L | 28103327 | 3L | 9893859..9894119 | 884..1144 | 1305 | 100 | Plus |
3L | 28103327 | 3L | 9893253..9893406 | 458..611 | 770 | 100 | Plus |
3L | 28103327 | 3L | 9892358..9892455 | 1..98 | 490 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3888..3961 | 1880..1955 | 141 | 67.1 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6236..6365 | 1830..1954 | 115 | 57.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9891062..9891159 | 1..98 | 100 | -> | Plus |
chr3L | 9891957..9892110 | 458..611 | 100 | -> | Plus |
chr3L | 9891530..9891888 | 99..457 | 99 | -> | Plus |
chr3L | 9892227..9892500 | 612..885 | 100 | -> | Plus |
chr3L | 9892565..9892822 | 886..1143 | 100 | -> | Plus |
chr3L | 9893955..9894769 | 1144..1958 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 1..954 | 378..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 1..954 | 378..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 1..954 | 378..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 1..954 | 378..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 1..954 | 378..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 30..1987 | 1..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 30..1987 | 1..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 18..1975 | 1..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 30..1987 | 1..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudE-RA | 18..1975 | 1..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9902151..9902965 | 1144..1958 | 100 | Plus | |
3L | 9899258..9899355 | 1..98 | 100 | -> | Plus |
3L | 9899726..9900084 | 99..457 | 100 | -> | Plus |
3L | 9900153..9900306 | 458..611 | 100 | -> | Plus |
3L | 9900423..9900696 | 612..885 | 100 | -> | Plus |
3L | 9900761..9901018 | 886..1143 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9902151..9902965 | 1144..1958 | 100 | Plus | |
3L | 9899258..9899355 | 1..98 | 100 | -> | Plus |
3L | 9899726..9900084 | 99..457 | 100 | -> | Plus |
3L | 9900153..9900306 | 458..611 | 100 | -> | Plus |
3L | 9900423..9900696 | 612..885 | 100 | -> | Plus |
3L | 9900761..9901018 | 886..1143 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9902151..9902965 | 1144..1958 | 100 | Plus | |
3L | 9899258..9899355 | 1..98 | 100 | -> | Plus |
3L | 9899726..9900084 | 99..457 | 100 | -> | Plus |
3L | 9900153..9900306 | 458..611 | 100 | -> | Plus |
3L | 9900423..9900696 | 612..885 | 100 | -> | Plus |
3L | 9900761..9901018 | 886..1143 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9892358..9892455 | 1..98 | 100 | -> | Plus |
arm_3L | 9892826..9893184 | 99..457 | 100 | -> | Plus |
arm_3L | 9893253..9893406 | 458..611 | 100 | -> | Plus |
arm_3L | 9893523..9893796 | 612..885 | 100 | -> | Plus |
arm_3L | 9893861..9894118 | 886..1143 | 100 | -> | Plus |
arm_3L | 9895251..9896065 | 1144..1958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9893523..9893796 | 612..885 | 100 | -> | Plus |
3L | 9892826..9893184 | 99..457 | 100 | -> | Plus |
3L | 9893253..9893406 | 458..611 | 100 | -> | Plus |
3L | 9893861..9894118 | 886..1143 | 100 | -> | Plus |
3L | 9895251..9896065 | 1144..1958 | 100 | Plus | |
3L | 9892358..9892455 | 1..98 | 100 | -> | Plus |
Translation from 377 to 1330
> LD19982.hyp MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW ILQFSVIHKPQIRNPIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nudE-PA | 317 | CG8104-PA | 1..317 | 1..317 | 1620 | 100 | Plus |
nudE-PD | 283 | CG8104-PD | 1..256 | 1..256 | 1299 | 100 | Plus |
nudE-PF | 328 | CG8104-PF | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PE | 328 | CG8104-PE | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PB | 328 | CG8104-PB | 1..256 | 1..256 | 1296 | 99.6 | Plus |
Translation from 377 to 1330
> LD19982.pep MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW ILQFSVIHKPQIRNPIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10581-PA | 314 | GF10581-PA | 1..302 | 1..305 | 1232 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15420-PA | 406 | GG15420-PA | 1..255 | 1..255 | 1316 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16050-PA | 336 | GH16050-PA | 1..300 | 1..299 | 1104 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nudE-PA | 317 | CG8104-PA | 1..317 | 1..317 | 1620 | 100 | Plus |
nudE-PD | 283 | CG8104-PD | 1..256 | 1..256 | 1299 | 100 | Plus |
nudE-PF | 328 | CG8104-PF | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PE | 328 | CG8104-PE | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PB | 328 | CG8104-PB | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PC | 377 | CG8104-PC | 1..256 | 1..256 | 1296 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12315-PA | 323 | GI12315-PA | 1..295 | 1..295 | 1124 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12531-PA | 370 | GL12531-PA | 1..301 | 1..299 | 1211 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20827-PA | 370 | GA20827-PA | 1..301 | 1..299 | 1199 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25193-PA | 338 | GM25193-PA | 1..309 | 1..311 | 1578 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14225-PA | 340 | GD14225-PA | 1..311 | 1..311 | 1604 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13251-PA | 321 | GJ13251-PA | 1..265 | 1..271 | 1094 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16785-PA | 649 | GK16785-PA | 1..254 | 1..255 | 1047 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21728-PA | 305 | GE21728-PA | 1..301 | 1..301 | 1524 | 94.4 | Plus |