Clone LD19982 Report

Search the DGRC for LD19982

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:199
Well:82
Vector:pBS SK-
Associated Gene/TranscriptnudE-RA
Protein status:LD19982.pep: gold
Preliminary Size:1915
Sequenced Size:1976

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8104 2001-01-01 Release 2 assignment
CG8104 2001-10-10 Blastp of sequenced clone
CG8104 2003-01-01 Sim4 clustering to Release 3
nudE 2008-04-29 Release 5.5 accounting
nudE 2008-08-15 Release 5.9 accounting
nudE 2008-12-18 5.12 accounting

Clone Sequence Records

LD19982.complete Sequence

1976 bp (1976 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061280

> LD19982.complete
GCGTTTTTGGAGTAGTGGTAAATTTTTACGAGCATAACTATTTACACTGA
TTTTATGTAAATAAAACAAACAAAACGTAGCAAAATTAAGTGCAAAGTTC
TATTCACCACCCCCAACACACAAAACAAAAAAAAAGTAAAACTACGACTT
GAACAACAACTGTGTTTTGGCATTTTAATCACAGCAATTAAAAACAAAGC
AGCCAAAAAACACGAATAAATAACCCAAACAGTAATAGACCAACCGTAGT
ACATAGCATTGTTCAGAAATTAAAAGTTAAATCAATTCGAACGAACGAAA
TTACAAACCCATTTTGACCGCCGATTAGTACACAAAAACCAGAAAAAGGA
GTTAGCAGCTAAGGAAAATTTGCAGAAATGGAGTCGCCCCCGATGTTCAA
TAGTGTGGAAGATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACC
ACAAAGAGTGGACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAG
TCCCGCGAAATGGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAG
TATAATCAAAGATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACG
AGTCTCTCAAGCTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATG
GAGAAACAGCTGGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTA
CCTGCGGCAGCTGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCA
TACTTAACGAAAGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTAC
GAGAAGAACGCCCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCA
GGAAAAACTACAGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGC
TGAACGTCAAGTCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCC
ACGGCAAACGACACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTC
GCTGCCAAATGGTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATG
CTGTCGCCACAAGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGT
TTAGTTAATAGAAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGG
AGACGAAACTGAAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGA
CACCGCTCCTCCCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTG
CTTCTCGCTGGATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATCCA
CAAACCCCAAATCCGAAACCCAATCACCTAGGGCGGGATACTGTTCAGTT
GGCTTTACGTTTACGTTACGTTACTTTAATGTTACTGTTCGCATTAATTA
AGTTTCTGCTGCCTCTTTATTTATTTGAACTAAAATGACTTTGTATAAAC
CACTTGCGATATTATGAATTACACAACAGTTGATGTTGTTGTTTCGAGCC
CAACATATATAACATGCCTTAGTACGAATTAAGTGTATACCTAAGCTATA
AGTACCCACTCGGTTCACTTTTGACTTGAATTGTTAACTCGAACGCAATT
GTTTTGGCATACAATGTGTTTAGCGACTAAGTTCAAAGTTGATCAACCAG
CAAAACAAGCGAAGAAGCTCTGTCCAAGTATTATACTTCAAGCGGACAAC
CAATACTCGTAGCGTTTAGGAAAAAGACAAGATCTAACCCGGGAAAAAAA
ATTATTAAAATTATCGAAACGATCATCTAGTTATATTGTAACTATCCCCA
GAGCTATTTTCTGTTTATATTTACCAGCGAATATAAATTTGTAAAAATGC
AAAATATTGCTAACGGCAAACTGTATAAAGCATAACAAAACTCCAACGAA
CAGGCAAACAAAATATATATATATATGTATGAATAAAGAGCAAAATAATT
AGTTTAATAAAAAAAAAAAAAAAAAA

LD19982.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
nudE.j 2711 nudE.j 30..1992 1..1963 9800 99.9 Plus
nudE.k 3335 nudE.k 562..1704 1..1143 5715 100 Plus
nudE-RB 2916 nudE-RB 562..1704 1..1143 5715 100 Plus
nudE.k 3335 nudE.k 1797..2616 1144..1963 4085 99.8 Plus
nudE-RB 2916 nudE-RB 1797..2616 1144..1963 4085 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9893955..9894769 1144..1958 4060 99.9 Plus
chr3L 24539361 chr3L 9891530..9891890 99..459 1790 99.7 Plus
chr3L 24539361 chr3L 9892225..9892500 610..885 1380 100 Plus
chr3L 24539361 chr3L 9892563..9892823 884..1144 1305 100 Plus
chr3L 24539361 chr3L 9891957..9892110 458..611 770 100 Plus
chr3L 24539361 chr3L 9891062..9891159 1..98 490 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9902151..9902970 1144..1963 4085 99.9 Plus
3L 28110227 3L 9899726..9900086 99..459 1805 100 Plus
3L 28110227 3L 9900421..9900696 610..885 1380 100 Plus
3L 28110227 3L 9900759..9901019 884..1144 1305 100 Plus
3L 28110227 3L 9900153..9900306 458..611 770 100 Plus
3L 28110227 3L 9899258..9899355 1..98 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9895251..9896070 1144..1963 4085 99.8 Plus
3L 28103327 3L 9892826..9893186 99..459 1805 100 Plus
3L 28103327 3L 9893521..9893796 610..885 1380 100 Plus
3L 28103327 3L 9893859..9894119 884..1144 1305 100 Plus
3L 28103327 3L 9893253..9893406 458..611 770 100 Plus
3L 28103327 3L 9892358..9892455 1..98 490 100 Plus
Blast to na_te.dros performed 2019-03-16 21:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3888..3961 1880..1955 141 67.1 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6236..6365 1830..1954 115 57.7 Plus

LD19982.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:30:58 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9891062..9891159 1..98 100 -> Plus
chr3L 9891957..9892110 458..611 100 -> Plus
chr3L 9891530..9891888 99..457 99 -> Plus
chr3L 9892227..9892500 612..885 100 -> Plus
chr3L 9892565..9892822 886..1143 100 -> Plus
chr3L 9893955..9894769 1144..1958 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:21 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 378..1331 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:39 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 378..1331 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:59:49 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 378..1331 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:41 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 378..1331 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:52 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 378..1331 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:50 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 30..1987 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:39 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 30..1987 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:49 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 18..1975 1..1958 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:41 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 30..1987 1..1958 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:52 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 18..1975 1..1958 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:58 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9902151..9902965 1144..1958 100   Plus
3L 9899258..9899355 1..98 100 -> Plus
3L 9899726..9900084 99..457 100 -> Plus
3L 9900153..9900306 458..611 100 -> Plus
3L 9900423..9900696 612..885 100 -> Plus
3L 9900761..9901018 886..1143 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:58 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9902151..9902965 1144..1958 100   Plus
3L 9899258..9899355 1..98 100 -> Plus
3L 9899726..9900084 99..457 100 -> Plus
3L 9900153..9900306 458..611 100 -> Plus
3L 9900423..9900696 612..885 100 -> Plus
3L 9900761..9901018 886..1143 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:58 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9902151..9902965 1144..1958 100   Plus
3L 9899258..9899355 1..98 100 -> Plus
3L 9899726..9900084 99..457 100 -> Plus
3L 9900153..9900306 458..611 100 -> Plus
3L 9900423..9900696 612..885 100 -> Plus
3L 9900761..9901018 886..1143 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:49 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9892358..9892455 1..98 100 -> Plus
arm_3L 9892826..9893184 99..457 100 -> Plus
arm_3L 9893253..9893406 458..611 100 -> Plus
arm_3L 9893523..9893796 612..885 100 -> Plus
arm_3L 9893861..9894118 886..1143 100 -> Plus
arm_3L 9895251..9896065 1144..1958 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:46 Download gff for LD19982.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9893523..9893796 612..885 100 -> Plus
3L 9892826..9893184 99..457 100 -> Plus
3L 9893253..9893406 458..611 100 -> Plus
3L 9893861..9894118 886..1143 100 -> Plus
3L 9895251..9896065 1144..1958 100   Plus
3L 9892358..9892455 1..98 100 -> Plus

LD19982.hyp Sequence

Translation from 377 to 1330

> LD19982.hyp
MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD
ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK
DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE
VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN
SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ
QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW
ILQFSVIHKPQIRNPIT*

LD19982.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-PA 317 CG8104-PA 1..317 1..317 1620 100 Plus
nudE-PD 283 CG8104-PD 1..256 1..256 1299 100 Plus
nudE-PF 328 CG8104-PF 1..256 1..256 1296 99.6 Plus
nudE-PE 328 CG8104-PE 1..256 1..256 1296 99.6 Plus
nudE-PB 328 CG8104-PB 1..256 1..256 1296 99.6 Plus

LD19982.pep Sequence

Translation from 377 to 1330

> LD19982.pep
MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD
ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK
DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE
VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN
SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ
QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW
ILQFSVIHKPQIRNPIT*

LD19982.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10581-PA 314 GF10581-PA 1..302 1..305 1232 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15420-PA 406 GG15420-PA 1..255 1..255 1316 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16050-PA 336 GH16050-PA 1..300 1..299 1104 72.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-PA 317 CG8104-PA 1..317 1..317 1620 100 Plus
nudE-PD 283 CG8104-PD 1..256 1..256 1299 100 Plus
nudE-PF 328 CG8104-PF 1..256 1..256 1296 99.6 Plus
nudE-PE 328 CG8104-PE 1..256 1..256 1296 99.6 Plus
nudE-PB 328 CG8104-PB 1..256 1..256 1296 99.6 Plus
nudE-PC 377 CG8104-PC 1..256 1..256 1296 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12315-PA 323 GI12315-PA 1..295 1..295 1124 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12531-PA 370 GL12531-PA 1..301 1..299 1211 78.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20827-PA 370 GA20827-PA 1..301 1..299 1199 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25193-PA 338 GM25193-PA 1..309 1..311 1578 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14225-PA 340 GD14225-PA 1..311 1..311 1604 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13251-PA 321 GJ13251-PA 1..265 1..271 1094 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16785-PA 649 GK16785-PA 1..254 1..255 1047 84.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21728-PA 305 GE21728-PA 1..301 1..301 1524 94.4 Plus