BDGP Sequence Production Resources |
Search the DGRC for LD20082
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 200 |
Well: | 82 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sep2-RA |
Protein status: | LD20082.pep: gold |
Preliminary Size: | 1565 |
Sequenced Size: | 1588 |
Gene | Date | Evidence |
---|---|---|
CG4173 | 2001-01-01 | Release 2 assignment |
CG4173 | 2001-10-10 | Blastp of sequenced clone |
CG4173 | 2003-01-01 | Sim4 clustering to Release 3 |
Sep2 | 2008-04-29 | Release 5.5 accounting |
Sep2 | 2008-08-15 | Release 5.9 accounting |
Sep2 | 2008-12-18 | 5.12 accounting |
1588 bp (1588 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061281
> LD20082.complete CGTATCTGGCCACACTTGCATATTCGCTGGCGACGCCTTTGATCCAAACT CTGCGCCCGGATTATTGGATTATTTGACTTGACTATTGGAAAATGTCCGT TGAGGTGGATTTCGTCGACAAGAAGGAGGTGCACCTCCGCACCCTGAAGC AGTCCGGTCACGTGGGATTCGACAGCTTGCCTGACCAACTGGTCAACAAG AGTGTCCAGAATGGATTCGTCTTCAACGTCATGTGTATAGGCGAAACCGG ACTGGGCAAGTCGACGCTGATGGACACGCTGTTCAACACCAGCTTCGAGT CCACGCCGAGTCCCCACACTTTGCCGAGCGTCAAGTTGAAGGCACACACC TACGAGCTGCAGGAGAGCAATGTGCGACTCAAGCTCACCATCTGCGACAC GGTTGGCTACGGCGATCAGATCAACAAGGACGACTCGTTCAAGGCGGTGG TGGACTACATCGACGCACAGTTCGAGAACTATCTGCAGGAGGAGCTGAAG ATCAAGCGATCGCTGGTGACATGCCACGACAGCCGCATCCACATCTGCCT CTACTTTATTTGCCCCACTGGGCACGGCCTCAAATCGCTGGACCTGGTGT GCATGAAGAAGCTGGACAGCAAGGTGAACATAATTCCGGTGATTGCCAAG GCGGATACCATTTCCAAGGTTGAGCTACAGCGCTTCAAGGCGAAGATCAT TCAGGAGCTAAACGCCAATGGAGTGCACATCTACCAGTTCCCCACCGACG ATGAGACGGTGGCCGAGACCAACACCAGCATGAACTCGCACATTCCCTTC GCCGTGGTGGGCAGCACGGAGTTTATTAAGGTGGGCAACAAGCTCATCCG CGCTCGCCAGTACCCCTGGGGCACGGTGCAGGTGGAGAACGAGACGCACT GCGACTTTGTGAAGCTGCGCGAGATGCTCATTCGCACCAACATGGAGGAT ATGCGCGAAAAGACACACACGCGCCACTACGAGCTGTATCGCCAGAAGAG GCTGGAGCAAATGGGCTTCAGCGATGTGGACAGCGACAACAAGCCCATCT CGTTCCAGCAGACGTTCGAGGCAAAGCGCTCCAACCATTTGGCCGAGCTG CAGTCCAAGGAGGAGGAGGTTCGTCAGATGTTCGTGCAGCGCGTTAAGGA GAAGGAGGCCGAGCTGAAGGAGAGCGAGAAGGACCTGCACGCCAAGTTCG AGAAGCTAAAGCGGGATCACGCCGAGGAGAAGCGCAAGCTGGAAGAGTCG CGCAAGGCGCTCGAGGAGGACTACCTTGACTTCCAGCGGCGCAAGCAGCA GTTGGCCACCGCCCACCACACGCTCACCCTCGGCAAGAGCAAGAAGAAGT AGAATCCGGCGCCGCCGCCTCACAATGTATTGAGAATTCTGTGCGGTTCG CTTATCCCAAAGTAATTATTGCTTTCTCATCTCGTTGTCTTTCATTTGTA CTATTAAGTTTACTTCAAATATTAACATATACACAACTACACGCATATGT ACGCAGGCATATAATGATTATGTATTTACAACTAACGAATAAATCGAACT TAGTATTTTAACAAAGTAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep2-RA | 1768 | Sep2-RA | 40..1612 | 1..1573 | 7865 | 100 | Plus |
Sep5-RA | 1741 | Sep5-RA | 936..1388 | 795..1247 | 825 | 78.8 | Plus |
Sep5-RB | 1891 | Sep5-RB | 1086..1538 | 795..1247 | 825 | 78.8 | Plus |
Sep5-RA | 1741 | Sep5-RA | 296..657 | 155..516 | 490 | 75.6 | Plus |
Sep5-RB | 1891 | Sep5-RB | 446..807 | 155..516 | 490 | 75.6 | Plus |
Sep5-RA | 1741 | Sep5-RA | 686..809 | 545..668 | 230 | 79 | Plus |
Sep5-RB | 1891 | Sep5-RB | 836..959 | 545..668 | 230 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16410043..16411373 | 1569..239 | 6655 | 100 | Minus |
chr2R | 21145070 | chr2R | 3847878..3848970 | 1247..155 | 1295 | 74.6 | Minus |
chr3R | 27901430 | chr3R | 16412037..16412277 | 241..1 | 1205 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20586125..20587459 | 1573..239 | 6675 | 100 | Minus |
2R | 25286936 | 2R | 7960486..7961578 | 1247..155 | 1295 | 74.6 | Minus |
3R | 32079331 | 3R | 20588123..20588363 | 241..1 | 1205 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20326956..20328290 | 1573..239 | 6675 | 100 | Minus |
3R | 31820162 | 3R | 20328954..20329194 | 241..1 | 1205 | 100 | Minus |
2R | 25260384 | 2R | 7961685..7962137 | 1247..795 | 825 | 78.8 | Minus |
2R | 25260384 | 2R | 7962416..7962777 | 516..155 | 490 | 75.6 | Minus |
2R | 25260384 | 2R | 7962264..7962387 | 668..545 | 230 | 79 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16412038..16412277 | 1..240 | 100 | Minus | |
chr3R | 16410043..16411371 | 241..1569 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1260 | 93..1352 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1260 | 93..1352 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1260 | 93..1352 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1260 | 93..1352 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1260 | 93..1352 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1569 | 1..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1569 | 1..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1562 | 8..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1569 | 1..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sep2-RA | 1..1562 | 8..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20586129..20587457 | 241..1569 | 100 | <- | Minus |
3R | 20588124..20588363 | 1..240 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20586129..20587457 | 241..1569 | 100 | <- | Minus |
3R | 20588124..20588363 | 1..240 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20586129..20587457 | 241..1569 | 100 | <- | Minus |
3R | 20588124..20588363 | 1..240 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16413846..16414085 | 1..240 | 100 | Minus | |
arm_3R | 16411851..16413179 | 241..1569 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20328955..20329194 | 1..240 | 100 | Minus | |
3R | 20326960..20328288 | 241..1569 | 100 | <- | Minus |
Translation from 92 to 1351
> LD20082.pep MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR KQQLATAHHTLTLGKSKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18330-PA | 419 | GF18330-PA | 1..419 | 1..419 | 2227 | 98.8 | Plus |
Dana\GF11226-PA | 419 | GF11226-PA | 18..415 | 15..412 | 1631 | 74.4 | Plus |
Dana\GF12347-PA | 545 | GF12347-PA | 118..522 | 13..419 | 791 | 39.2 | Plus |
Dana\GF20920-PA | 364 | GF20920-PA | 9..349 | 17..346 | 726 | 43.9 | Plus |
Dana\GF22296-PA | 375 | GF22296-PA | 9..347 | 19..346 | 667 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15324-PA | 419 | GG15324-PA | 1..419 | 1..419 | 2239 | 99.5 | Plus |
Dere\GG10692-PA | 422 | GG10692-PA | 19..422 | 16..419 | 1720 | 75.2 | Plus |
Dere\GG23345-PA | 541 | GG23345-PA | 114..484 | 13..384 | 767 | 40.5 | Plus |
Dere\GG19725-PA | 361 | GG19725-PA | 9..302 | 17..304 | 719 | 47.1 | Plus |
Dere\GG18234-PA | 430 | GG18234-PA | 64..402 | 19..346 | 660 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16156-PA | 419 | GH16156-PA | 1..419 | 1..419 | 2207 | 97.6 | Plus |
Dgri\GH21082-PA | 541 | GH21082-PA | 114..518 | 13..419 | 782 | 38.5 | Plus |
Dgri\GH24812-PA | 362 | GH24812-PA | 9..347 | 17..346 | 736 | 44.6 | Plus |
Dgri\GH24231-PA | 440 | GH24231-PA | 74..412 | 19..346 | 661 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep2-PA | 419 | CG4173-PA | 1..419 | 1..419 | 2165 | 100 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 60..419 | 1862 | 100 | Plus |
Sep5-PB | 422 | CG2916-PB | 19..422 | 16..419 | 1651 | 74.5 | Plus |
Sep5-PA | 422 | CG2916-PA | 19..422 | 16..419 | 1651 | 74.5 | Plus |
pnut-PA | 539 | CG8705-PA | 112..516 | 13..419 | 782 | 38.5 | Plus |
pnut-PB | 539 | CG8705-PB | 112..516 | 13..419 | 782 | 38.5 | Plus |
Sep1-PA | 361 | CG1403-PA | 9..346 | 17..346 | 703 | 44.2 | Plus |
Sep4-PG | 375 | CG9699-PG | 9..368 | 19..382 | 655 | 37.7 | Plus |
Sep4-PC | 427 | CG9699-PC | 61..420 | 19..382 | 655 | 37.7 | Plus |
Sep4-PE | 427 | CG9699-PE | 61..420 | 19..382 | 655 | 37.7 | Plus |
Sep4-PD | 427 | CG9699-PD | 61..420 | 19..382 | 655 | 37.7 | Plus |
Sep4-PB | 427 | CG9699-PB | 61..420 | 19..382 | 655 | 37.7 | Plus |
Sep4-PF | 427 | CG9699-PF | 61..420 | 19..382 | 655 | 37.7 | Plus |
Sep4-PA | 427 | CG9699-PA | 61..420 | 19..382 | 655 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22174-PA | 419 | GI22174-PA | 1..419 | 1..419 | 2207 | 97.6 | Plus |
Dmoj\GI18682-PA | 541 | GI18682-PA | 114..518 | 13..419 | 797 | 39.5 | Plus |
Dmoj\GI21539-PA | 364 | GI21539-PA | 9..349 | 17..346 | 725 | 44.3 | Plus |
Dmoj\GI10938-PA | 294 | GI10938-PA | 2..266 | 88..346 | 541 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13925-PA | 419 | GL13925-PA | 1..419 | 1..419 | 2221 | 98.3 | Plus |
Dper\GL10608-PA | 421 | GL10608-PA | 15..421 | 16..419 | 1706 | 77.1 | Plus |
Dper\GL11211-PA | 534 | GL11211-PA | 107..511 | 13..419 | 792 | 39.2 | Plus |
Dper\GL16012-PA | 363 | GL16012-PA | 9..302 | 17..304 | 722 | 47.1 | Plus |
Dper\GL19764-PA | 369 | GL19764-PA | 41..365 | 41..356 | 596 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18006-PA | 419 | GA18006-PA | 1..419 | 1..419 | 2221 | 98.3 | Plus |
Dpse\GA15516-PA | 421 | GA15516-PA | 15..421 | 16..419 | 1709 | 77.1 | Plus |
Dpse\GA21269-PA | 534 | GA21269-PA | 107..511 | 13..419 | 792 | 39.2 | Plus |
Dpse\GA12712-PA | 363 | GA12712-PA | 9..302 | 17..304 | 722 | 47.1 | Plus |
Dpse\GA21972-PA | 432 | GA21972-PA | 66..404 | 19..346 | 660 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23178-PA | 419 | GM23178-PA | 1..419 | 1..419 | 2248 | 100 | Plus |
Dsec\GM20740-PA | 422 | GM20740-PA | 19..422 | 16..419 | 1716 | 74.5 | Plus |
Dsec\GM21017-PA | 539 | GM21017-PA | 112..482 | 13..384 | 766 | 40.5 | Plus |
Dsec\GM23080-PA | 361 | GM23080-PA | 9..346 | 17..346 | 723 | 43.9 | Plus |
Dsec\GM13376-PA | 217 | GM13376-PA | 1..189 | 166..346 | 347 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20051-PA | 419 | GD20051-PA | 1..419 | 1..419 | 2243 | 99.8 | Plus |
Dsim\GD10205-PA | 422 | GD10205-PA | 19..422 | 16..419 | 1720 | 74.8 | Plus |
Dsim\GD10550-PA | 528 | GD10550-PA | 101..471 | 13..384 | 766 | 40.5 | Plus |
Dsim\GD15733-PA | 375 | GD15733-PA | 9..347 | 19..346 | 665 | 39.3 | Plus |
Dsim\GD15296-PA | 196 | GD15296-PA | 49..196 | 272..419 | 563 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24294-PA | 419 | GJ24294-PA | 1..419 | 1..419 | 2210 | 97.9 | Plus |
Dvir\GJ21698-PA | 538 | GJ21698-PA | 111..515 | 13..419 | 786 | 38.8 | Plus |
Dvir\GJ16012-PA | 364 | GJ16012-PA | 9..349 | 17..346 | 728 | 44.1 | Plus |
Dvir\GJ15264-PA | 440 | GJ15264-PA | 81..412 | 19..346 | 616 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22714-PA | 419 | GK22714-PA | 1..419 | 1..419 | 2200 | 97.1 | Plus |
Dwil\GK15728-PA | 422 | GK15728-PA | 9..422 | 9..419 | 1650 | 73.2 | Plus |
Dwil\GK15820-PA | 546 | GK15820-PA | 119..523 | 13..419 | 791 | 39.5 | Plus |
Dwil\GK25618-PA | 364 | GK25618-PA | 9..349 | 17..346 | 719 | 43.6 | Plus |
Dwil\GK10092-PA | 431 | GK10092-PA | 65..403 | 19..346 | 667 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Sep2-PA | 419 | GE25056-PA | 1..419 | 1..419 | 2231 | 99 | Plus |
Dyak\GE23454-PA | 422 | GE23454-PA | 19..422 | 16..419 | 1699 | 74.3 | Plus |
Dyak\GE19185-PA | 541 | GE19185-PA | 114..484 | 13..384 | 767 | 40.5 | Plus |
Dyak\GE17923-PA | 361 | GE17923-PA | 9..302 | 17..304 | 719 | 47.1 | Plus |
Dyak\GE15652-PA | 430 | GE15652-PA | 64..402 | 19..346 | 663 | 39.3 | Plus |
Translation from 92 to 1351
> LD20082.hyp MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR KQQLATAHHTLTLGKSKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sep2-PA | 419 | CG4173-PA | 1..419 | 1..419 | 2165 | 100 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 60..419 | 1862 | 100 | Plus |
Sep5-PB | 422 | CG2916-PB | 19..422 | 16..419 | 1651 | 74.5 | Plus |
Sep5-PA | 422 | CG2916-PA | 19..422 | 16..419 | 1651 | 74.5 | Plus |
pnut-PA | 539 | CG8705-PA | 112..516 | 13..419 | 782 | 38.5 | Plus |