Clone LD20082 Report

Search the DGRC for LD20082

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:200
Well:82
Vector:pBS SK-
Associated Gene/TranscriptSep2-RA
Protein status:LD20082.pep: gold
Preliminary Size:1565
Sequenced Size:1588

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4173 2001-01-01 Release 2 assignment
CG4173 2001-10-10 Blastp of sequenced clone
CG4173 2003-01-01 Sim4 clustering to Release 3
Sep2 2008-04-29 Release 5.5 accounting
Sep2 2008-08-15 Release 5.9 accounting
Sep2 2008-12-18 5.12 accounting

Clone Sequence Records

LD20082.complete Sequence

1588 bp (1588 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061281

> LD20082.complete
CGTATCTGGCCACACTTGCATATTCGCTGGCGACGCCTTTGATCCAAACT
CTGCGCCCGGATTATTGGATTATTTGACTTGACTATTGGAAAATGTCCGT
TGAGGTGGATTTCGTCGACAAGAAGGAGGTGCACCTCCGCACCCTGAAGC
AGTCCGGTCACGTGGGATTCGACAGCTTGCCTGACCAACTGGTCAACAAG
AGTGTCCAGAATGGATTCGTCTTCAACGTCATGTGTATAGGCGAAACCGG
ACTGGGCAAGTCGACGCTGATGGACACGCTGTTCAACACCAGCTTCGAGT
CCACGCCGAGTCCCCACACTTTGCCGAGCGTCAAGTTGAAGGCACACACC
TACGAGCTGCAGGAGAGCAATGTGCGACTCAAGCTCACCATCTGCGACAC
GGTTGGCTACGGCGATCAGATCAACAAGGACGACTCGTTCAAGGCGGTGG
TGGACTACATCGACGCACAGTTCGAGAACTATCTGCAGGAGGAGCTGAAG
ATCAAGCGATCGCTGGTGACATGCCACGACAGCCGCATCCACATCTGCCT
CTACTTTATTTGCCCCACTGGGCACGGCCTCAAATCGCTGGACCTGGTGT
GCATGAAGAAGCTGGACAGCAAGGTGAACATAATTCCGGTGATTGCCAAG
GCGGATACCATTTCCAAGGTTGAGCTACAGCGCTTCAAGGCGAAGATCAT
TCAGGAGCTAAACGCCAATGGAGTGCACATCTACCAGTTCCCCACCGACG
ATGAGACGGTGGCCGAGACCAACACCAGCATGAACTCGCACATTCCCTTC
GCCGTGGTGGGCAGCACGGAGTTTATTAAGGTGGGCAACAAGCTCATCCG
CGCTCGCCAGTACCCCTGGGGCACGGTGCAGGTGGAGAACGAGACGCACT
GCGACTTTGTGAAGCTGCGCGAGATGCTCATTCGCACCAACATGGAGGAT
ATGCGCGAAAAGACACACACGCGCCACTACGAGCTGTATCGCCAGAAGAG
GCTGGAGCAAATGGGCTTCAGCGATGTGGACAGCGACAACAAGCCCATCT
CGTTCCAGCAGACGTTCGAGGCAAAGCGCTCCAACCATTTGGCCGAGCTG
CAGTCCAAGGAGGAGGAGGTTCGTCAGATGTTCGTGCAGCGCGTTAAGGA
GAAGGAGGCCGAGCTGAAGGAGAGCGAGAAGGACCTGCACGCCAAGTTCG
AGAAGCTAAAGCGGGATCACGCCGAGGAGAAGCGCAAGCTGGAAGAGTCG
CGCAAGGCGCTCGAGGAGGACTACCTTGACTTCCAGCGGCGCAAGCAGCA
GTTGGCCACCGCCCACCACACGCTCACCCTCGGCAAGAGCAAGAAGAAGT
AGAATCCGGCGCCGCCGCCTCACAATGTATTGAGAATTCTGTGCGGTTCG
CTTATCCCAAAGTAATTATTGCTTTCTCATCTCGTTGTCTTTCATTTGTA
CTATTAAGTTTACTTCAAATATTAACATATACACAACTACACGCATATGT
ACGCAGGCATATAATGATTATGTATTTACAACTAACGAATAAATCGAACT
TAGTATTTTAACAAAGTAGAAAAAAAAAAAAAAAAAAA

LD20082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1768 Sep2-RA 40..1612 1..1573 7865 100 Plus
Sep5-RA 1741 Sep5-RA 936..1388 795..1247 825 78.8 Plus
Sep5-RB 1891 Sep5-RB 1086..1538 795..1247 825 78.8 Plus
Sep5-RA 1741 Sep5-RA 296..657 155..516 490 75.6 Plus
Sep5-RB 1891 Sep5-RB 446..807 155..516 490 75.6 Plus
Sep5-RA 1741 Sep5-RA 686..809 545..668 230 79 Plus
Sep5-RB 1891 Sep5-RB 836..959 545..668 230 79 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16410043..16411373 1569..239 6655 100 Minus
chr2R 21145070 chr2R 3847878..3848970 1247..155 1295 74.6 Minus
chr3R 27901430 chr3R 16412037..16412277 241..1 1205 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20586125..20587459 1573..239 6675 100 Minus
2R 25286936 2R 7960486..7961578 1247..155 1295 74.6 Minus
3R 32079331 3R 20588123..20588363 241..1 1205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20326956..20328290 1573..239 6675 100 Minus
3R 31820162 3R 20328954..20329194 241..1 1205 100 Minus
2R 25260384 2R 7961685..7962137 1247..795 825 78.8 Minus
2R 25260384 2R 7962416..7962777 516..155 490 75.6 Minus
2R 25260384 2R 7962264..7962387 668..545 230 79 Minus
Blast to na_te.dros performed on 2019-03-16 04:29:35 has no hits.

LD20082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:30:21 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16412038..16412277 1..240 100   Minus
chr3R 16410043..16411371 241..1569 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:27 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1260 93..1352 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:23 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1260 93..1352 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:31:15 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1260 93..1352 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:10 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1260 93..1352 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:41:01 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1260 93..1352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:32 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1569 1..1569 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:23 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1569 1..1569 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:15 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1562 8..1569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:11 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1569 1..1569 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:41:01 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 1..1562 8..1569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:21 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20586129..20587457 241..1569 100 <- Minus
3R 20588124..20588363 1..240 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:21 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20586129..20587457 241..1569 100 <- Minus
3R 20588124..20588363 1..240 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:30:21 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20586129..20587457 241..1569 100 <- Minus
3R 20588124..20588363 1..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:15 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16413846..16414085 1..240 100   Minus
arm_3R 16411851..16413179 241..1569 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:53 Download gff for LD20082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20328955..20329194 1..240 100   Minus
3R 20326960..20328288 241..1569 100 <- Minus

LD20082.pep Sequence

Translation from 92 to 1351

> LD20082.pep
MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG
ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI
CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH
ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA
KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK
LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR
QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR
VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR
KQQLATAHHTLTLGKSKKK*

LD20082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18330-PA 419 GF18330-PA 1..419 1..419 2227 98.8 Plus
Dana\GF11226-PA 419 GF11226-PA 18..415 15..412 1631 74.4 Plus
Dana\GF12347-PA 545 GF12347-PA 118..522 13..419 791 39.2 Plus
Dana\GF20920-PA 364 GF20920-PA 9..349 17..346 726 43.9 Plus
Dana\GF22296-PA 375 GF22296-PA 9..347 19..346 667 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15324-PA 419 GG15324-PA 1..419 1..419 2239 99.5 Plus
Dere\GG10692-PA 422 GG10692-PA 19..422 16..419 1720 75.2 Plus
Dere\GG23345-PA 541 GG23345-PA 114..484 13..384 767 40.5 Plus
Dere\GG19725-PA 361 GG19725-PA 9..302 17..304 719 47.1 Plus
Dere\GG18234-PA 430 GG18234-PA 64..402 19..346 660 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16156-PA 419 GH16156-PA 1..419 1..419 2207 97.6 Plus
Dgri\GH21082-PA 541 GH21082-PA 114..518 13..419 782 38.5 Plus
Dgri\GH24812-PA 362 GH24812-PA 9..347 17..346 736 44.6 Plus
Dgri\GH24231-PA 440 GH24231-PA 74..412 19..346 661 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-PA 419 CG4173-PA 1..419 1..419 2165 100 Plus
Sep2-PB 360 CG4173-PB 1..360 60..419 1862 100 Plus
Sep5-PB 422 CG2916-PB 19..422 16..419 1651 74.5 Plus
Sep5-PA 422 CG2916-PA 19..422 16..419 1651 74.5 Plus
pnut-PA 539 CG8705-PA 112..516 13..419 782 38.5 Plus
pnut-PB 539 CG8705-PB 112..516 13..419 782 38.5 Plus
Sep1-PA 361 CG1403-PA 9..346 17..346 703 44.2 Plus
Sep4-PG 375 CG9699-PG 9..368 19..382 655 37.7 Plus
Sep4-PC 427 CG9699-PC 61..420 19..382 655 37.7 Plus
Sep4-PE 427 CG9699-PE 61..420 19..382 655 37.7 Plus
Sep4-PD 427 CG9699-PD 61..420 19..382 655 37.7 Plus
Sep4-PB 427 CG9699-PB 61..420 19..382 655 37.7 Plus
Sep4-PF 427 CG9699-PF 61..420 19..382 655 37.7 Plus
Sep4-PA 427 CG9699-PA 61..420 19..382 655 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22174-PA 419 GI22174-PA 1..419 1..419 2207 97.6 Plus
Dmoj\GI18682-PA 541 GI18682-PA 114..518 13..419 797 39.5 Plus
Dmoj\GI21539-PA 364 GI21539-PA 9..349 17..346 725 44.3 Plus
Dmoj\GI10938-PA 294 GI10938-PA 2..266 88..346 541 40.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13925-PA 419 GL13925-PA 1..419 1..419 2221 98.3 Plus
Dper\GL10608-PA 421 GL10608-PA 15..421 16..419 1706 77.1 Plus
Dper\GL11211-PA 534 GL11211-PA 107..511 13..419 792 39.2 Plus
Dper\GL16012-PA 363 GL16012-PA 9..302 17..304 722 47.1 Plus
Dper\GL19764-PA 369 GL19764-PA 41..365 41..356 596 36.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18006-PA 419 GA18006-PA 1..419 1..419 2221 98.3 Plus
Dpse\GA15516-PA 421 GA15516-PA 15..421 16..419 1709 77.1 Plus
Dpse\GA21269-PA 534 GA21269-PA 107..511 13..419 792 39.2 Plus
Dpse\GA12712-PA 363 GA12712-PA 9..302 17..304 722 47.1 Plus
Dpse\GA21972-PA 432 GA21972-PA 66..404 19..346 660 39 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23178-PA 419 GM23178-PA 1..419 1..419 2248 100 Plus
Dsec\GM20740-PA 422 GM20740-PA 19..422 16..419 1716 74.5 Plus
Dsec\GM21017-PA 539 GM21017-PA 112..482 13..384 766 40.5 Plus
Dsec\GM23080-PA 361 GM23080-PA 9..346 17..346 723 43.9 Plus
Dsec\GM13376-PA 217 GM13376-PA 1..189 166..346 347 38.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20051-PA 419 GD20051-PA 1..419 1..419 2243 99.8 Plus
Dsim\GD10205-PA 422 GD10205-PA 19..422 16..419 1720 74.8 Plus
Dsim\GD10550-PA 528 GD10550-PA 101..471 13..384 766 40.5 Plus
Dsim\GD15733-PA 375 GD15733-PA 9..347 19..346 665 39.3 Plus
Dsim\GD15296-PA 196 GD15296-PA 49..196 272..419 563 72.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24294-PA 419 GJ24294-PA 1..419 1..419 2210 97.9 Plus
Dvir\GJ21698-PA 538 GJ21698-PA 111..515 13..419 786 38.8 Plus
Dvir\GJ16012-PA 364 GJ16012-PA 9..349 17..346 728 44.1 Plus
Dvir\GJ15264-PA 440 GJ15264-PA 81..412 19..346 616 37.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22714-PA 419 GK22714-PA 1..419 1..419 2200 97.1 Plus
Dwil\GK15728-PA 422 GK15728-PA 9..422 9..419 1650 73.2 Plus
Dwil\GK15820-PA 546 GK15820-PA 119..523 13..419 791 39.5 Plus
Dwil\GK25618-PA 364 GK25618-PA 9..349 17..346 719 43.6 Plus
Dwil\GK10092-PA 431 GK10092-PA 65..403 19..346 667 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Sep2-PA 419 GE25056-PA 1..419 1..419 2231 99 Plus
Dyak\GE23454-PA 422 GE23454-PA 19..422 16..419 1699 74.3 Plus
Dyak\GE19185-PA 541 GE19185-PA 114..484 13..384 767 40.5 Plus
Dyak\GE17923-PA 361 GE17923-PA 9..302 17..304 719 47.1 Plus
Dyak\GE15652-PA 430 GE15652-PA 64..402 19..346 663 39.3 Plus

LD20082.hyp Sequence

Translation from 92 to 1351

> LD20082.hyp
MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG
ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI
CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH
ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA
KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK
LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR
QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR
VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR
KQQLATAHHTLTLGKSKKK*

LD20082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-PA 419 CG4173-PA 1..419 1..419 2165 100 Plus
Sep2-PB 360 CG4173-PB 1..360 60..419 1862 100 Plus
Sep5-PB 422 CG2916-PB 19..422 16..419 1651 74.5 Plus
Sep5-PA 422 CG2916-PA 19..422 16..419 1651 74.5 Plus
pnut-PA 539 CG8705-PA 112..516 13..419 782 38.5 Plus