Clone LD20087 Report

Search the DGRC for LD20087

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:200
Well:87
Vector:pBS SK-
Associated Gene/TranscriptCG7420-RA
Protein status:LD20087.pep: gold
Preliminary Size:1556
Sequenced Size:1515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7420 2001-01-01 Release 2 assignment
CG7420 2001-10-10 Blastp of sequenced clone
CG7420 2003-01-01 Sim4 clustering to Release 3
CG7420 2008-04-29 Release 5.5 accounting
CG7420 2008-08-15 Release 5.9 accounting
CG7420 2008-12-18 5.12 accounting

Clone Sequence Records

LD20087.complete Sequence

1515 bp (1515 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061282

> LD20087.complete
CGACGCTGAAACTAATAGAACGCGAAATATAAAAGTAAATCCAAAGCAGA
ACCAAGCCTCAGTTTTACATGTGCTGGCAAAGGCAGAGCAGCGCTTTCGG
AGCCAACTGGAGGCCATCGAGGAGTCGAAACCATCGGATCAGCAGGCGCA
TTCCTGGCGTGACTGCGGTGCATTAAATCACCCGGAAAATCGCGGCGACG
AACAGCAACCGGAAGTTCGGCGCGAAACGAGCAACTGGTGGTCACCAGAA
TGGAGGTTTACGCCTGGGGTGCCAATTCTCACGGCCAGCTCGGCCTTGGC
TTTGAGTCCGAATTGTGCATGACACCGCAACGGGTGGCCAAGTGCTCCTT
CGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGGTGGTGGCCATGTTCTCA
TCCTCGACACAAGCGGACGGATTCATGCCTGCGGATGGAACAATCGTGGT
CAACTGGGACTGGATTCCACGGAGGAGTGCCACAGCGAGTTCAAGATGAT
CCCCACGGAATACTTCGGGGATGTTCCTGTGGAAACCATTAGCTGTGGCT
GGGACATTTCGGGAGCCATCACGTTGACCAAACGCCTGTTTGTCTGGGGC
TCCAATGCCTTTCAGCAGCTGGGAATTTGTCAGCGCGGCTTTACTGCCGT
GAGAAGACCAATGCCAGTAAAGCTTCCACGCGAAGAACCCGCCCAGAGGA
TCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTACGCAAGACAACAAAATC
TACGTTTTCGGACGATTGAGGATTATGGACCCTCCGCCCATCGAGCTGGA
TATCACGGCCACCTGCCTGCACCGCTGCAATACGGTGAAGATACAGGTCC
ACAATCCCAACGAACTGCGGATAGTTTCCATTTCGAGTGGTCAGAACCAC
ATGGTGCTCAAGTGCGCGGATCTAAGCGAAACGGGTGGAGGCAGCACCAA
AAGAATCCTTACCTTGGGTGACAACAAGTTTGGCCAGTCCAACGCCTTTC
AGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGGGTTGGACCCACAATGCA
GCTGTGCTCAAAAACAACGAGATCCTCGTATGGGGTCGCAATTGCTACGG
TCAGCTGGGAATGGGTTCGTTCAGCGAACAGCAGGCAATACCCACGCCAC
TTCGCCTGAAGCTTCCTGAGGATCAGGGTCCTGCCAGAATTCACATGGGC
GCCGAGCACGGTCTACTGAGGACTACGGCAGGAGAGGTCTACACCTGGGG
ATGGAACGAGCATGGGAACTGCGGCAACAACAGCACCGAAAATGTTTGCA
CCCCAACTCTTTTACAACTGCCACCAGTGAAATTGTGCGGCGCAGGAGCA
GGATTTTGTTACGCGATCACAGAGCCCGTAATCTAACTTTAAGTCCATGT
GATGTCCTTCTGGTTTAGCTTATGACCCATTGTAAAATGTTCGTGTACGG
CTTTGTTAAAACTTTTAAATAAAAATACTACTGTTATTGATGAAATGAAA
AAAAAAAAAAAAAAA

LD20087.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-RA 1646 CG7420-RA 108..1609 1..1502 7510 100 Plus
CG7420.a 1602 CG7420.a 108..1602 1..1497 7430 99.8 Plus
nc_300.a 421 nc_300.a 1..202 1497..1296 1010 100 Minus
nc_300.a 421 nc_300.a 221..421 1268..1068 1005 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1501017..1501793 1295..519 3885 100 Minus
chr2L 23010047 chr2L 1502530..1502797 268..1 1340 100 Minus
chr2L 23010047 chr2L 1501852..1502105 520..267 1270 100 Minus
chr2L 23010047 chr2L 1500755..1500956 1497..1296 995 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1501097..1501873 1295..519 3885 100 Minus
2L 23513712 2L 1502610..1502877 268..1 1340 100 Minus
2L 23513712 2L 1501932..1502185 520..267 1270 100 Minus
2L 23513712 2L 1500830..1501036 1502..1296 1035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1501097..1501873 1295..519 3885 100 Minus
2L 23513712 2L 1502610..1502877 268..1 1340 100 Minus
2L 23513712 2L 1501932..1502185 520..267 1270 100 Minus
2L 23513712 2L 1500830..1501036 1502..1296 1035 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:58:05 has no hits.

LD20087.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:59:17 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1501853..1502104 268..519 100 <- Minus
chr2L 1502531..1502797 1..267 100   Minus
chr2L 1500755..1500956 1296..1497 99 <- Minus
chr2L 1501017..1501792 520..1295 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:28 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 1..1137 250..1386 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:11 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 1..1137 250..1386 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:03:30 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RB 1..1167 250..1418 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:01 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 1..1137 250..1386 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:29 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RB 1..1167 250..1418 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:17 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 27..1523 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:11 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 27..1523 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:03:30 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 28..1524 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:01 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 27..1523 1..1497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:29 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
CG7420-RA 28..1524 1..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:17 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1500835..1501036 1296..1497 100 <- Minus
2L 1501097..1501872 520..1295 100 <- Minus
2L 1501933..1502184 268..519 100 <- Minus
2L 1502611..1502877 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:17 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1500835..1501036 1296..1497 100 <- Minus
2L 1501097..1501872 520..1295 100 <- Minus
2L 1501933..1502184 268..519 100 <- Minus
2L 1502611..1502877 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:17 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1500835..1501036 1296..1497 100 <- Minus
2L 1501097..1501872 520..1295 100 <- Minus
2L 1501933..1502184 268..519 100 <- Minus
2L 1502611..1502877 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:03:30 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1500835..1501036 1296..1497 100 <- Minus
arm_2L 1501097..1501872 520..1295 100 <- Minus
arm_2L 1501933..1502184 268..519 100 <- Minus
arm_2L 1502611..1502877 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:41 Download gff for LD20087.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1501097..1501872 520..1295 100 <- Minus
2L 1501933..1502184 268..519 100 <- Minus
2L 1502611..1502877 1..267 100   Minus
2L 1500835..1501036 1296..1497 100 <- Minus

LD20087.pep Sequence

Translation from 249 to 1385

> LD20087.pep
MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL
ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG
WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR
ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV
HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF
QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP
LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC
TPTLLQLPPVKLCGAGAGFCYAITEPVI*

LD20087.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14720-PA 381 GF14720-PA 1..376 1..375 1772 88.3 Plus
Dana\GF24453-PA 1058 GF24453-PA 6..360 2..366 202 27.6 Plus
Dana\GF19414-PA 5087 GF19414-PA 3076..3417 3..355 196 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24590-PA 378 GG24590-PA 1..377 1..377 1966 96.3 Plus
Dere\GG14780-PA 1058 GG14780-PA 6..360 2..366 205 27.8 Plus
Dere\GG14780-PA 1058 GG14780-PA 5..245 111..356 184 28 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10327-PA 388 GH10327-PA 6..378 3..377 1629 78.5 Plus
Dgri\GH17927-PA 4933 GH17927-PA 2914..3255 3..355 198 24.4 Plus
Dgri\GH15214-PA 1052 GH15214-PA 1..356 1..366 196 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-PA 378 CG7420-PA 1..378 1..378 2049 100 Plus
CG7420-PB 388 CG7420-PB 1..349 1..349 1886 99.7 Plus
Herc4-PC 1062 CG9153-PC 6..364 2..365 239 27.5 Plus
Herc4-PA 1058 CG9153-PA 6..359 2..365 228 26.6 Plus
Herc4-PB 1058 CG9153-PB 6..359 2..365 228 26.6 Plus
HERC2-PC 4912 CG11734-PC 2988..3320 3..346 217 24.9 Plus
Herc4-PA 1058 CG9153-PA 5..245 111..356 200 28.1 Plus
Herc4-PB 1058 CG9153-PB 5..245 111..356 200 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17084-PA 385 GI17084-PA 3..375 1..375 1665 80.1 Plus
Dmoj\GI16306-PA 5077 GI16306-PA 3063..3404 3..355 210 24.7 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 1..355 1..365 206 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14788-PA 379 GL14788-PA 1..378 1..378 1728 82.8 Plus
Dper\GL14793-PA 379 GL14793-PA 1..378 1..378 1728 82.8 Plus
Dper\GL26839-PA 3840 GL26839-PA 1834..2175 3..355 201 24.5 Plus
Dper\GL16177-PA 1052 GL16177-PA 1..292 1..355 187 24 Plus
Dper\GL16177-PA 1052 GL16177-PA 3..241 113..356 174 26.6 Plus
Dper\GL26838-PA 828 GL26838-PA 194..365 208..374 152 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25299-PA 379 GA25299-PA 1..378 1..378 1725 82.6 Plus
Dpse\GA25306-PA 549 GA25306-PA 177..548 7..378 1692 82.3 Plus
Dpse\GA11166-PA 5072 GA11166-PA 3097..3438 3..355 200 24.4 Plus
Dpse\GA28417-PA 1052 GA28417-PA 1..292 1..355 189 24 Plus
Dpse\GA28417-PA 1052 GA28417-PA 3..241 113..356 174 26.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16607-PA 378 GM16607-PA 1..377 1..377 1991 98.1 Plus
Dsec\GM14399-PA 1058 GM14399-PA 6..360 2..366 216 28.1 Plus
Dsec\GM23027-PA 3806 GM23027-PA 2643..2984 3..355 206 24.9 Plus
Dsec\GM14399-PA 1058 GM14399-PA 5..245 111..356 188 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22907-PA 378 GD22907-PA 1..377 1..377 2009 99.2 Plus
Dsim\GD13608-PA 1058 GD13608-PA 6..360 2..366 214 27.8 Plus
Dsim\GD13608-PA 1058 GD13608-PA 5..257 111..370 193 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10738-PA 387 GJ10738-PA 3..377 1..377 1658 78.6 Plus
Dvir\GJ12148-PA 1053 GJ12148-PA 1..356 1..366 199 26.5 Plus
Dvir\GJ15642-PA 5062 GJ15642-PA 3047..3388 3..355 198 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14945-PA 382 GK14945-PA 1..378 1..375 1706 83.1 Plus
Dwil\GK20144-PA 4996 GK20144-PA 3029..3370 3..355 201 24.4 Plus
Dwil\GK20388-PA 1054 GK20388-PA 1..342 1..352 197 27 Plus
Dwil\GK20388-PA 1054 GK20388-PA 3..241 113..356 167 28 Plus
Dwil\GK22640-PA 1261 GK22640-PA 26..277 38..352 160 24.1 Plus
Dwil\GK22640-PA 1261 GK22640-PA 148..314 3..173 159 28 Plus
Dwil\GK17526-PA 482 GK17526-PA 43..391 2..356 153 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15577-PA 378 GE15577-PA 1..377 1..377 1980 97.1 Plus
Dyak\GE21143-PA 1057 GE21143-PA 6..360 2..366 211 28.1 Plus
Dyak\GE17877-PA 2660 GE17877-PA 734..1075 3..355 204 24.7 Plus
Dyak\GE21143-PA 1057 GE21143-PA 5..245 111..356 190 28.4 Plus

LD20087.hyp Sequence

Translation from 249 to 1385

> LD20087.hyp
MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL
ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG
WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR
ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV
HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF
QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP
LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC
TPTLLQLPPVKLCGAGAGFCYAITEPVI*

LD20087.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7420-PA 378 CG7420-PA 1..378 1..378 2049 100 Plus
CG7420-PB 388 CG7420-PB 1..349 1..349 1886 99.7 Plus
CG9153-PC 1062 CG9153-PC 6..364 2..365 239 27.5 Plus
CG9153-PA 1058 CG9153-PA 6..359 2..365 228 26.6 Plus
CG9153-PB 1058 CG9153-PB 6..359 2..365 228 26.6 Plus
CG9153-PA 1058 CG9153-PA 5..245 111..356 200 28.1 Plus