BDGP Sequence Production Resources |
Search the DGRC for LD20087
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 200 |
Well: | 87 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG7420-RA |
Protein status: | LD20087.pep: gold |
Preliminary Size: | 1556 |
Sequenced Size: | 1515 |
Gene | Date | Evidence |
---|---|---|
CG7420 | 2001-01-01 | Release 2 assignment |
CG7420 | 2001-10-10 | Blastp of sequenced clone |
CG7420 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7420 | 2008-04-29 | Release 5.5 accounting |
CG7420 | 2008-08-15 | Release 5.9 accounting |
CG7420 | 2008-12-18 | 5.12 accounting |
1515 bp (1515 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061282
> LD20087.complete CGACGCTGAAACTAATAGAACGCGAAATATAAAAGTAAATCCAAAGCAGA ACCAAGCCTCAGTTTTACATGTGCTGGCAAAGGCAGAGCAGCGCTTTCGG AGCCAACTGGAGGCCATCGAGGAGTCGAAACCATCGGATCAGCAGGCGCA TTCCTGGCGTGACTGCGGTGCATTAAATCACCCGGAAAATCGCGGCGACG AACAGCAACCGGAAGTTCGGCGCGAAACGAGCAACTGGTGGTCACCAGAA TGGAGGTTTACGCCTGGGGTGCCAATTCTCACGGCCAGCTCGGCCTTGGC TTTGAGTCCGAATTGTGCATGACACCGCAACGGGTGGCCAAGTGCTCCTT CGCCCCCGCCCAGGTTCGCTTGATTCGTGGAGGTGGTGGCCATGTTCTCA TCCTCGACACAAGCGGACGGATTCATGCCTGCGGATGGAACAATCGTGGT CAACTGGGACTGGATTCCACGGAGGAGTGCCACAGCGAGTTCAAGATGAT CCCCACGGAATACTTCGGGGATGTTCCTGTGGAAACCATTAGCTGTGGCT GGGACATTTCGGGAGCCATCACGTTGACCAAACGCCTGTTTGTCTGGGGC TCCAATGCCTTTCAGCAGCTGGGAATTTGTCAGCGCGGCTTTACTGCCGT GAGAAGACCAATGCCAGTAAAGCTTCCACGCGAAGAACCCGCCCAGAGGA TCAGCTTCGGCCTGCGCCACTGTGCCGTCCTTACGCAAGACAACAAAATC TACGTTTTCGGACGATTGAGGATTATGGACCCTCCGCCCATCGAGCTGGA TATCACGGCCACCTGCCTGCACCGCTGCAATACGGTGAAGATACAGGTCC ACAATCCCAACGAACTGCGGATAGTTTCCATTTCGAGTGGTCAGAACCAC ATGGTGCTCAAGTGCGCGGATCTAAGCGAAACGGGTGGAGGCAGCACCAA AAGAATCCTTACCTTGGGTGACAACAAGTTTGGCCAGTCCAACGCCTTTC AGTTTGAGGAGGATGTGCGTCAGTTGGCCGTGGGTTGGACCCACAATGCA GCTGTGCTCAAAAACAACGAGATCCTCGTATGGGGTCGCAATTGCTACGG TCAGCTGGGAATGGGTTCGTTCAGCGAACAGCAGGCAATACCCACGCCAC TTCGCCTGAAGCTTCCTGAGGATCAGGGTCCTGCCAGAATTCACATGGGC GCCGAGCACGGTCTACTGAGGACTACGGCAGGAGAGGTCTACACCTGGGG ATGGAACGAGCATGGGAACTGCGGCAACAACAGCACCGAAAATGTTTGCA CCCCAACTCTTTTACAACTGCCACCAGTGAAATTGTGCGGCGCAGGAGCA GGATTTTGTTACGCGATCACAGAGCCCGTAATCTAACTTTAAGTCCATGT GATGTCCTTCTGGTTTAGCTTATGACCCATTGTAAAATGTTCGTGTACGG CTTTGTTAAAACTTTTAAATAAAAATACTACTGTTATTGATGAAATGAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7420-RA | 1646 | CG7420-RA | 108..1609 | 1..1502 | 7510 | 100 | Plus |
CG7420.a | 1602 | CG7420.a | 108..1602 | 1..1497 | 7430 | 99.8 | Plus |
nc_300.a | 421 | nc_300.a | 1..202 | 1497..1296 | 1010 | 100 | Minus |
nc_300.a | 421 | nc_300.a | 221..421 | 1268..1068 | 1005 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1501017..1501793 | 1295..519 | 3885 | 100 | Minus |
chr2L | 23010047 | chr2L | 1502530..1502797 | 268..1 | 1340 | 100 | Minus |
chr2L | 23010047 | chr2L | 1501852..1502105 | 520..267 | 1270 | 100 | Minus |
chr2L | 23010047 | chr2L | 1500755..1500956 | 1497..1296 | 995 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1501097..1501873 | 1295..519 | 3885 | 100 | Minus |
2L | 23513712 | 2L | 1502610..1502877 | 268..1 | 1340 | 100 | Minus |
2L | 23513712 | 2L | 1501932..1502185 | 520..267 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 1500830..1501036 | 1502..1296 | 1035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1501097..1501873 | 1295..519 | 3885 | 100 | Minus |
2L | 23513712 | 2L | 1502610..1502877 | 268..1 | 1340 | 100 | Minus |
2L | 23513712 | 2L | 1501932..1502185 | 520..267 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 1500830..1501036 | 1502..1296 | 1035 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1501853..1502104 | 268..519 | 100 | <- | Minus |
chr2L | 1502531..1502797 | 1..267 | 100 | Minus | |
chr2L | 1500755..1500956 | 1296..1497 | 99 | <- | Minus |
chr2L | 1501017..1501792 | 520..1295 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 1..1137 | 250..1386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 1..1137 | 250..1386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RB | 1..1167 | 250..1418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 1..1137 | 250..1386 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RB | 1..1167 | 250..1418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 27..1523 | 1..1497 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 27..1523 | 1..1497 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 28..1524 | 1..1497 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 27..1523 | 1..1497 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7420-RA | 28..1524 | 1..1497 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1500835..1501036 | 1296..1497 | 100 | <- | Minus |
2L | 1501097..1501872 | 520..1295 | 100 | <- | Minus |
2L | 1501933..1502184 | 268..519 | 100 | <- | Minus |
2L | 1502611..1502877 | 1..267 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1500835..1501036 | 1296..1497 | 100 | <- | Minus |
2L | 1501097..1501872 | 520..1295 | 100 | <- | Minus |
2L | 1501933..1502184 | 268..519 | 100 | <- | Minus |
2L | 1502611..1502877 | 1..267 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1500835..1501036 | 1296..1497 | 100 | <- | Minus |
2L | 1501097..1501872 | 520..1295 | 100 | <- | Minus |
2L | 1501933..1502184 | 268..519 | 100 | <- | Minus |
2L | 1502611..1502877 | 1..267 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1500835..1501036 | 1296..1497 | 100 | <- | Minus |
arm_2L | 1501097..1501872 | 520..1295 | 100 | <- | Minus |
arm_2L | 1501933..1502184 | 268..519 | 100 | <- | Minus |
arm_2L | 1502611..1502877 | 1..267 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1501097..1501872 | 520..1295 | 100 | <- | Minus |
2L | 1501933..1502184 | 268..519 | 100 | <- | Minus |
2L | 1502611..1502877 | 1..267 | 100 | Minus | |
2L | 1500835..1501036 | 1296..1497 | 100 | <- | Minus |
Translation from 249 to 1385
> LD20087.pep MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC TPTLLQLPPVKLCGAGAGFCYAITEPVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14720-PA | 381 | GF14720-PA | 1..376 | 1..375 | 1772 | 88.3 | Plus |
Dana\GF24453-PA | 1058 | GF24453-PA | 6..360 | 2..366 | 202 | 27.6 | Plus |
Dana\GF19414-PA | 5087 | GF19414-PA | 3076..3417 | 3..355 | 196 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24590-PA | 378 | GG24590-PA | 1..377 | 1..377 | 1966 | 96.3 | Plus |
Dere\GG14780-PA | 1058 | GG14780-PA | 6..360 | 2..366 | 205 | 27.8 | Plus |
Dere\GG14780-PA | 1058 | GG14780-PA | 5..245 | 111..356 | 184 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10327-PA | 388 | GH10327-PA | 6..378 | 3..377 | 1629 | 78.5 | Plus |
Dgri\GH17927-PA | 4933 | GH17927-PA | 2914..3255 | 3..355 | 198 | 24.4 | Plus |
Dgri\GH15214-PA | 1052 | GH15214-PA | 1..356 | 1..366 | 196 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7420-PA | 378 | CG7420-PA | 1..378 | 1..378 | 2049 | 100 | Plus |
CG7420-PB | 388 | CG7420-PB | 1..349 | 1..349 | 1886 | 99.7 | Plus |
Herc4-PC | 1062 | CG9153-PC | 6..364 | 2..365 | 239 | 27.5 | Plus |
Herc4-PA | 1058 | CG9153-PA | 6..359 | 2..365 | 228 | 26.6 | Plus |
Herc4-PB | 1058 | CG9153-PB | 6..359 | 2..365 | 228 | 26.6 | Plus |
HERC2-PC | 4912 | CG11734-PC | 2988..3320 | 3..346 | 217 | 24.9 | Plus |
Herc4-PA | 1058 | CG9153-PA | 5..245 | 111..356 | 200 | 28.1 | Plus |
Herc4-PB | 1058 | CG9153-PB | 5..245 | 111..356 | 200 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17084-PA | 385 | GI17084-PA | 3..375 | 1..375 | 1665 | 80.1 | Plus |
Dmoj\GI16306-PA | 5077 | GI16306-PA | 3063..3404 | 3..355 | 210 | 24.7 | Plus |
Dmoj\GI13052-PA | 1053 | GI13052-PA | 1..355 | 1..365 | 206 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14788-PA | 379 | GL14788-PA | 1..378 | 1..378 | 1728 | 82.8 | Plus |
Dper\GL14793-PA | 379 | GL14793-PA | 1..378 | 1..378 | 1728 | 82.8 | Plus |
Dper\GL26839-PA | 3840 | GL26839-PA | 1834..2175 | 3..355 | 201 | 24.5 | Plus |
Dper\GL16177-PA | 1052 | GL16177-PA | 1..292 | 1..355 | 187 | 24 | Plus |
Dper\GL16177-PA | 1052 | GL16177-PA | 3..241 | 113..356 | 174 | 26.6 | Plus |
Dper\GL26838-PA | 828 | GL26838-PA | 194..365 | 208..374 | 152 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25299-PA | 379 | GA25299-PA | 1..378 | 1..378 | 1725 | 82.6 | Plus |
Dpse\GA25306-PA | 549 | GA25306-PA | 177..548 | 7..378 | 1692 | 82.3 | Plus |
Dpse\GA11166-PA | 5072 | GA11166-PA | 3097..3438 | 3..355 | 200 | 24.4 | Plus |
Dpse\GA28417-PA | 1052 | GA28417-PA | 1..292 | 1..355 | 189 | 24 | Plus |
Dpse\GA28417-PA | 1052 | GA28417-PA | 3..241 | 113..356 | 174 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16607-PA | 378 | GM16607-PA | 1..377 | 1..377 | 1991 | 98.1 | Plus |
Dsec\GM14399-PA | 1058 | GM14399-PA | 6..360 | 2..366 | 216 | 28.1 | Plus |
Dsec\GM23027-PA | 3806 | GM23027-PA | 2643..2984 | 3..355 | 206 | 24.9 | Plus |
Dsec\GM14399-PA | 1058 | GM14399-PA | 5..245 | 111..356 | 188 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22907-PA | 378 | GD22907-PA | 1..377 | 1..377 | 2009 | 99.2 | Plus |
Dsim\GD13608-PA | 1058 | GD13608-PA | 6..360 | 2..366 | 214 | 27.8 | Plus |
Dsim\GD13608-PA | 1058 | GD13608-PA | 5..257 | 111..370 | 193 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10738-PA | 387 | GJ10738-PA | 3..377 | 1..377 | 1658 | 78.6 | Plus |
Dvir\GJ12148-PA | 1053 | GJ12148-PA | 1..356 | 1..366 | 199 | 26.5 | Plus |
Dvir\GJ15642-PA | 5062 | GJ15642-PA | 3047..3388 | 3..355 | 198 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14945-PA | 382 | GK14945-PA | 1..378 | 1..375 | 1706 | 83.1 | Plus |
Dwil\GK20144-PA | 4996 | GK20144-PA | 3029..3370 | 3..355 | 201 | 24.4 | Plus |
Dwil\GK20388-PA | 1054 | GK20388-PA | 1..342 | 1..352 | 197 | 27 | Plus |
Dwil\GK20388-PA | 1054 | GK20388-PA | 3..241 | 113..356 | 167 | 28 | Plus |
Dwil\GK22640-PA | 1261 | GK22640-PA | 26..277 | 38..352 | 160 | 24.1 | Plus |
Dwil\GK22640-PA | 1261 | GK22640-PA | 148..314 | 3..173 | 159 | 28 | Plus |
Dwil\GK17526-PA | 482 | GK17526-PA | 43..391 | 2..356 | 153 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15577-PA | 378 | GE15577-PA | 1..377 | 1..377 | 1980 | 97.1 | Plus |
Dyak\GE21143-PA | 1057 | GE21143-PA | 6..360 | 2..366 | 211 | 28.1 | Plus |
Dyak\GE17877-PA | 2660 | GE17877-PA | 734..1075 | 3..355 | 204 | 24.7 | Plus |
Dyak\GE21143-PA | 1057 | GE21143-PA | 5..245 | 111..356 | 190 | 28.4 | Plus |
Translation from 249 to 1385
> LD20087.hyp MEVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVL ILDTSGRIHACGWNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVETISCG WDISGAITLTKRLFVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQR ISFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITATCLHRCNTVKIQV HNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAF QFEEDVRQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTP LRLKLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENVC TPTLLQLPPVKLCGAGAGFCYAITEPVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7420-PA | 378 | CG7420-PA | 1..378 | 1..378 | 2049 | 100 | Plus |
CG7420-PB | 388 | CG7420-PB | 1..349 | 1..349 | 1886 | 99.7 | Plus |
CG9153-PC | 1062 | CG9153-PC | 6..364 | 2..365 | 239 | 27.5 | Plus |
CG9153-PA | 1058 | CG9153-PA | 6..359 | 2..365 | 228 | 26.6 | Plus |
CG9153-PB | 1058 | CG9153-PB | 6..359 | 2..365 | 228 | 26.6 | Plus |
CG9153-PA | 1058 | CG9153-PA | 5..245 | 111..356 | 200 | 28.1 | Plus |