Clone LD20162 Report

Search the DGRC for LD20162

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:201
Well:62
Vector:pBS SK-
Associated Gene/TranscriptCG31633-RA
Protein status:LD20162.pep: gold
Preliminary Size:2151
Sequenced Size:1505

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13770 2002-01-01 Sim4 clustering to Release 2
CG31633 2002-05-18 Blastp of sequenced clone
CG31633 2003-01-01 Sim4 clustering to Release 3
CG31633 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LD20162.complete Sequence

1505 bp (1505 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118908

> LD20162.complete
CAACTTTATAGGCAACTCGTCGATCTGGAAAACCCTTCATTTCTGAGGAT
TAGGCTGCTATTGTGAACATGGCACTCATTGAGAACCTCAATGATGACTG
CGTGCTTAAAATTGTAGATTACCTCGATCTGGAGGATCAGCTGAAGCTGT
GGAAGAGTTCCGAGCCCGCATCGCGACTGAGATCGCTGATATCCTACATC
TGGCAGCGCAATCGGGAATATACCATTGACTATTATACATTCAATGACGA
CTATGAGCTACTGAACGAATTCCTGCAGTGCATTCGCTTCACGGTGACGG
AACTTACACTCCAATACCTAGCCATGGATCACCTGGAGCGGTGGAAGGGT
CACACCTTCCCCAACATGCGTCAATTGATCTACTTGGGCGATGAGACCAG
TGAAATAGAAGGAGACGCCGACATCGCCATTCTGGTGGACTGCTTCCCGC
AGCTGGAAGCCATCAGGCTGAGCGGGAAGACTACTGGTAACCACATCAGT
CGTTGGCGGAACATTCGCCGACTGGACCTTCAGCTGTGCTGGTACCTGAG
CCCGCAGGGCTTCGAGGATATCTGTCAAAACCTGCGACTACAGACACTCA
GTATCCAGTGGCAAAAGATCGAACAGAATGCATACGTGCGATCCATCTGT
ATGCTGCATGAACTGGAGGAGCTGGAGCTGGACATAGTTTACCTAAACAG
GGACAACATCAGCCAACTGTTGAGCCTGCCTAAACTGATAAAGCTGCGCC
TGCACAACTTCTACCAGGTGGACGATCTACTGTGCGAAATTGGAAGCATA
AGGGGTCAAGATGTGTTGACTGCCGCATTCAGTAATAATATCTGGATGAG
GCCAACGGAGGTGCTGGCCAAACTGCGAAATCTCCGATGTTTAACTCTCG
TCGATGATGAAGGATGTGCTGCCATTGACTTTTCCACGATCACCTATTGC
TTTCCGCTCTTGGAGCAACTGCATCTGGAGAACTCGCGTATATGGGTCAA
CGCCGATGGTATATGGGACGTGCTTCTTGCCTGTCCCCGTCTCAGGGAAT
TCAGCATGATCAACCATGTTTTGTACGACGAGTTCTTTGCCTTCAGCAAG
TCAACAATGAACCGCGCTCTAAATCAGCGAACGAAGCCTTTGAAAATGCA
TTTTTATAAAACCGGCAAGGATGACTTGGTTTCGAAGCACTTTAAACATC
CCAAACTTAATGTTTCCTTCAGTGCTACTAGTAGCAGCTATTCACAATTA
CCTGACGAATGTATTGAATTGGAATTTAAACGCCCCGAGTCGTGATTCAC
TAAGTTAACTAGCTTAGTTAACTATTATCTAAACGGACCAAAATTGTGCT
ATTTAATTGATAAGTCTTTCGTCGATAAGCTGGTTATTAAAATGATTGCT
GATAATAATATATAAATATAATATAAAAATATAAAAAAAAAAATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAA
AAAAA

LD20162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-RA 1526 CG31633-RA 88..1522 1..1435 7175 100 Plus
CG31633.a 1515 CG31633.a 194..1511 118..1435 6590 100 Plus
CG31633.a 1515 CG31633.a 88..193 1..106 530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6654125..6655198 1180..107 5370 100 Minus
chr2L 23010047 chr2L 6653814..6654071 1435..1178 1290 100 Minus
chr2L 23010047 chr2L 6655253..6655358 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6655068..6656141 1180..107 5370 100 Minus
2L 23513712 2L 6654757..6655014 1435..1178 1290 100 Minus
2L 23513712 2L 6656196..6656301 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6655068..6656141 1180..107 5370 100 Minus
2L 23513712 2L 6654757..6655014 1435..1178 1290 100 Minus
2L 23513712 2L 6656196..6656301 106..1 530 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:58:11 has no hits.

LD20162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:59:20 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6653846..6654070 1179..1403 99 <- Minus
chr2L 6654127..6655198 107..1178 100 <- Minus
chr2L 6655253..6655358 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:30 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1227 69..1295 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:46 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1227 69..1295 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:03:35 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1227 69..1295 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:58 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1227 69..1295 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:38 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1227 69..1295 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:53 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1424 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:45 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 15..1438 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:03:35 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 21..1444 1..1424 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:58 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 1..1424 1..1424 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:38 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31633-RA 21..1444 1..1424 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:20 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6654768..6655013 1179..1424 100 <- Minus
2L 6655070..6656141 107..1178 100 <- Minus
2L 6656196..6656301 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:20 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6654768..6655013 1179..1424 100 <- Minus
2L 6655070..6656141 107..1178 100 <- Minus
2L 6656196..6656301 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:20 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6654768..6655013 1179..1424 100 <- Minus
2L 6655070..6656141 107..1178 100 <- Minus
2L 6656196..6656301 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:03:35 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6654768..6655013 1179..1424 100 <- Minus
arm_2L 6655070..6656141 107..1178 100 <- Minus
arm_2L 6656196..6656301 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:21 Download gff for LD20162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6656196..6656301 1..106 100   Minus
2L 6654768..6655013 1179..1424 100 <- Minus
2L 6655070..6656141 107..1178 100 <- Minus

LD20162.pep Sequence

Translation from 68 to 1294

> LD20162.pep
MALIENLNDDCVLKIVDYLDLEDQLKLWKSSEPASRLRSLISYIWQRNRE
YTIDYYTFNDDYELLNEFLQCIRFTVTELTLQYLAMDHLERWKGHTFPNM
RQLIYLGDETSEIEGDADIAILVDCFPQLEAIRLSGKTTGNHISRWRNIR
RLDLQLCWYLSPQGFEDICQNLRLQTLSIQWQKIEQNAYVRSICMLHELE
ELELDIVYLNRDNISQLLSLPKLIKLRLHNFYQVDDLLCEIGSIRGQDVL
TAAFSNNIWMRPTEVLAKLRNLRCLTLVDDEGCAAIDFSTITYCFPLLEQ
LHLENSRIWVNADGIWDVLLACPRLREFSMINHVLYDEFFAFSKSTMNRA
LNQRTKPLKMHFYKTGKDDLVSKHFKHPKLNVSFSATSSSYSQLPDECIE
LEFKRPES*

LD20162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15444-PA 410 GF15444-PA 1..402 1..403 1231 57.8 Plus
Dana\GF20947-PA 419 GF20947-PA 3..412 4..403 476 32.3 Plus
Dana\GF15531-PA 405 GF15531-PA 1..384 4..384 279 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23604-PA 408 GG23604-PA 1..408 1..408 1548 78.4 Plus
Dere\GG23566-PA 331 GG23566-PA 1..331 1..408 444 33.3 Plus
Dere\GG25289-PA 405 GG25289-PA 1..384 4..384 284 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11441-PA 374 GH11441-PA 1..356 3..388 418 30.6 Plus
Dgri\GH11440-PA 363 GH11440-PA 1..347 3..373 390 29.7 Plus
Dgri\GH16801-PA 414 GH16801-PA 1..395 3..387 347 26.7 Plus
Dgri\GH13074-PA 447 GH13074-PA 21..398 6..360 192 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-PA 408 CG31633-PA 1..408 1..408 2158 100 Plus
CG13088-PA 401 CG13088-PA 1..380 4..384 365 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16596-PA 383 GI16596-PA 1..356 4..382 391 30.2 Plus
Dmoj\GI16906-PA 374 GI16906-PA 1..346 3..368 325 29.2 Plus
Dmoj\GI13815-PA 412 GI13815-PA 1..410 3..406 316 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26206-PA 402 GL26206-PA 3..397 4..403 863 44 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16349-PA 402 GA16349-PA 3..397 4..403 868 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14045-PA 408 GM14045-PA 1..408 1..408 1785 87 Plus
Dsec\GM17000-PA 405 GM17000-PA 1..365 4..366 294 26.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22559-PA 408 GD22559-PA 1..408 1..408 1781 86.8 Plus
Dsim\GD22527-PA 350 GD22527-PA 1..350 65..408 455 34.5 Plus
Dsim\GD23549-PA 327 GD23549-PA 1..325 4..326 271 27.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17173-PA 386 GJ17173-PA 1..368 3..391 553 34.4 Plus
Dvir\GJ11680-PA 412 GJ11680-PA 1..392 3..386 362 28.3 Plus
Dvir\GJ21161-PA 368 GJ21161-PA 1..203 4..206 162 24.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18278-PA 399 GK18278-PA 2..395 15..404 668 36.9 Plus
Dwil\GK15456-PA 412 GK15456-PA 7..389 7..384 331 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18423-PA 408 GE18423-PA 1..408 1..408 1594 78.7 Plus
Dyak\GE19329-PA 405 GE19329-PA 1..367 4..368 295 28 Plus
Dyak\GE12698-PA 441 GE12698-PA 12..393 2..360 156 24.1 Plus

LD20162.hyp Sequence

Translation from 68 to 1294

> LD20162.hyp
MALIENLNDDCVLKIVDYLDLEDQLKLWKSSEPASRLRSLISYIWQRNRE
YTIDYYTFNDDYELLNEFLQCIRFTVTELTLQYLAMDHLERWKGHTFPNM
RQLIYLGDETSEIEGDADIAILVDCFPQLEAIRLSGKTTGNHISRWRNIR
RLDLQLCWYLSPQGFEDICQNLRLQTLSIQWQKIEQNAYVRSICMLHELE
ELELDIVYLNRDNISQLLSLPKLIKLRLHNFYQVDDLLCEIGSIRGQDVL
TAAFSNNIWMRPTEVLAKLRNLRCLTLVDDEGCAAIDFSTITYCFPLLEQ
LHLENSRIWVNADGIWDVLLACPRLREFSMINHVLYDEFFAFSKSTMNRA
LNQRTKPLKMHFYKTGKDDLVSKHFKHPKLNVSFSATSSSYSQLPDECIE
LEFKRPES*

LD20162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31633-PA 408 CG31633-PA 1..408 1..408 2158 100 Plus
CG13088-PA 401 CG13088-PA 1..380 4..384 365 29 Plus