BDGP Sequence Production Resources |
Search the DGRC for LD20162
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 201 |
Well: | 62 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG31633-RA |
Protein status: | LD20162.pep: gold |
Preliminary Size: | 2151 |
Sequenced Size: | 1505 |
Gene | Date | Evidence |
---|---|---|
CG13770 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31633 | 2002-05-18 | Blastp of sequenced clone |
CG31633 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31633 | 2008-04-29 | Release 5.5 accounting |
1505 bp (1505 high quality bases) assembled on 2002-05-18
GenBank Submission: AY118908
> LD20162.complete CAACTTTATAGGCAACTCGTCGATCTGGAAAACCCTTCATTTCTGAGGAT TAGGCTGCTATTGTGAACATGGCACTCATTGAGAACCTCAATGATGACTG CGTGCTTAAAATTGTAGATTACCTCGATCTGGAGGATCAGCTGAAGCTGT GGAAGAGTTCCGAGCCCGCATCGCGACTGAGATCGCTGATATCCTACATC TGGCAGCGCAATCGGGAATATACCATTGACTATTATACATTCAATGACGA CTATGAGCTACTGAACGAATTCCTGCAGTGCATTCGCTTCACGGTGACGG AACTTACACTCCAATACCTAGCCATGGATCACCTGGAGCGGTGGAAGGGT CACACCTTCCCCAACATGCGTCAATTGATCTACTTGGGCGATGAGACCAG TGAAATAGAAGGAGACGCCGACATCGCCATTCTGGTGGACTGCTTCCCGC AGCTGGAAGCCATCAGGCTGAGCGGGAAGACTACTGGTAACCACATCAGT CGTTGGCGGAACATTCGCCGACTGGACCTTCAGCTGTGCTGGTACCTGAG CCCGCAGGGCTTCGAGGATATCTGTCAAAACCTGCGACTACAGACACTCA GTATCCAGTGGCAAAAGATCGAACAGAATGCATACGTGCGATCCATCTGT ATGCTGCATGAACTGGAGGAGCTGGAGCTGGACATAGTTTACCTAAACAG GGACAACATCAGCCAACTGTTGAGCCTGCCTAAACTGATAAAGCTGCGCC TGCACAACTTCTACCAGGTGGACGATCTACTGTGCGAAATTGGAAGCATA AGGGGTCAAGATGTGTTGACTGCCGCATTCAGTAATAATATCTGGATGAG GCCAACGGAGGTGCTGGCCAAACTGCGAAATCTCCGATGTTTAACTCTCG TCGATGATGAAGGATGTGCTGCCATTGACTTTTCCACGATCACCTATTGC TTTCCGCTCTTGGAGCAACTGCATCTGGAGAACTCGCGTATATGGGTCAA CGCCGATGGTATATGGGACGTGCTTCTTGCCTGTCCCCGTCTCAGGGAAT TCAGCATGATCAACCATGTTTTGTACGACGAGTTCTTTGCCTTCAGCAAG TCAACAATGAACCGCGCTCTAAATCAGCGAACGAAGCCTTTGAAAATGCA TTTTTATAAAACCGGCAAGGATGACTTGGTTTCGAAGCACTTTAAACATC CCAAACTTAATGTTTCCTTCAGTGCTACTAGTAGCAGCTATTCACAATTA CCTGACGAATGTATTGAATTGGAATTTAAACGCCCCGAGTCGTGATTCAC TAAGTTAACTAGCTTAGTTAACTATTATCTAAACGGACCAAAATTGTGCT ATTTAATTGATAAGTCTTTCGTCGATAAGCTGGTTATTAAAATGATTGCT GATAATAATATATAAATATAATATAAAAATATAAAAAAAAAAATAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6654125..6655198 | 1180..107 | 5370 | 100 | Minus |
chr2L | 23010047 | chr2L | 6653814..6654071 | 1435..1178 | 1290 | 100 | Minus |
chr2L | 23010047 | chr2L | 6655253..6655358 | 106..1 | 530 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6655068..6656141 | 1180..107 | 5370 | 100 | Minus |
2L | 23513712 | 2L | 6654757..6655014 | 1435..1178 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 6656196..6656301 | 106..1 | 530 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6655068..6656141 | 1180..107 | 5370 | 100 | Minus |
2L | 23513712 | 2L | 6654757..6655014 | 1435..1178 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 6656196..6656301 | 106..1 | 530 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6653846..6654070 | 1179..1403 | 99 | <- | Minus |
chr2L | 6654127..6655198 | 107..1178 | 100 | <- | Minus |
chr2L | 6655253..6655358 | 1..106 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1227 | 69..1295 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1227 | 69..1295 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1227 | 69..1295 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1227 | 69..1295 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1227 | 69..1295 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1424 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 15..1438 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 21..1444 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 1..1424 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31633-RA | 21..1444 | 1..1424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6654768..6655013 | 1179..1424 | 100 | <- | Minus |
2L | 6655070..6656141 | 107..1178 | 100 | <- | Minus |
2L | 6656196..6656301 | 1..106 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6654768..6655013 | 1179..1424 | 100 | <- | Minus |
2L | 6655070..6656141 | 107..1178 | 100 | <- | Minus |
2L | 6656196..6656301 | 1..106 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6654768..6655013 | 1179..1424 | 100 | <- | Minus |
2L | 6655070..6656141 | 107..1178 | 100 | <- | Minus |
2L | 6656196..6656301 | 1..106 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6654768..6655013 | 1179..1424 | 100 | <- | Minus |
arm_2L | 6655070..6656141 | 107..1178 | 100 | <- | Minus |
arm_2L | 6656196..6656301 | 1..106 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6656196..6656301 | 1..106 | 100 | Minus | |
2L | 6654768..6655013 | 1179..1424 | 100 | <- | Minus |
2L | 6655070..6656141 | 107..1178 | 100 | <- | Minus |
Translation from 68 to 1294
> LD20162.pep MALIENLNDDCVLKIVDYLDLEDQLKLWKSSEPASRLRSLISYIWQRNRE YTIDYYTFNDDYELLNEFLQCIRFTVTELTLQYLAMDHLERWKGHTFPNM RQLIYLGDETSEIEGDADIAILVDCFPQLEAIRLSGKTTGNHISRWRNIR RLDLQLCWYLSPQGFEDICQNLRLQTLSIQWQKIEQNAYVRSICMLHELE ELELDIVYLNRDNISQLLSLPKLIKLRLHNFYQVDDLLCEIGSIRGQDVL TAAFSNNIWMRPTEVLAKLRNLRCLTLVDDEGCAAIDFSTITYCFPLLEQ LHLENSRIWVNADGIWDVLLACPRLREFSMINHVLYDEFFAFSKSTMNRA LNQRTKPLKMHFYKTGKDDLVSKHFKHPKLNVSFSATSSSYSQLPDECIE LEFKRPES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15444-PA | 410 | GF15444-PA | 1..402 | 1..403 | 1231 | 57.8 | Plus |
Dana\GF20947-PA | 419 | GF20947-PA | 3..412 | 4..403 | 476 | 32.3 | Plus |
Dana\GF15531-PA | 405 | GF15531-PA | 1..384 | 4..384 | 279 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23604-PA | 408 | GG23604-PA | 1..408 | 1..408 | 1548 | 78.4 | Plus |
Dere\GG23566-PA | 331 | GG23566-PA | 1..331 | 1..408 | 444 | 33.3 | Plus |
Dere\GG25289-PA | 405 | GG25289-PA | 1..384 | 4..384 | 284 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11441-PA | 374 | GH11441-PA | 1..356 | 3..388 | 418 | 30.6 | Plus |
Dgri\GH11440-PA | 363 | GH11440-PA | 1..347 | 3..373 | 390 | 29.7 | Plus |
Dgri\GH16801-PA | 414 | GH16801-PA | 1..395 | 3..387 | 347 | 26.7 | Plus |
Dgri\GH13074-PA | 447 | GH13074-PA | 21..398 | 6..360 | 192 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31633-PA | 408 | CG31633-PA | 1..408 | 1..408 | 2158 | 100 | Plus |
CG13088-PA | 401 | CG13088-PA | 1..380 | 4..384 | 365 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16596-PA | 383 | GI16596-PA | 1..356 | 4..382 | 391 | 30.2 | Plus |
Dmoj\GI16906-PA | 374 | GI16906-PA | 1..346 | 3..368 | 325 | 29.2 | Plus |
Dmoj\GI13815-PA | 412 | GI13815-PA | 1..410 | 3..406 | 316 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26206-PA | 402 | GL26206-PA | 3..397 | 4..403 | 863 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16349-PA | 402 | GA16349-PA | 3..397 | 4..403 | 868 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14045-PA | 408 | GM14045-PA | 1..408 | 1..408 | 1785 | 87 | Plus |
Dsec\GM17000-PA | 405 | GM17000-PA | 1..365 | 4..366 | 294 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22559-PA | 408 | GD22559-PA | 1..408 | 1..408 | 1781 | 86.8 | Plus |
Dsim\GD22527-PA | 350 | GD22527-PA | 1..350 | 65..408 | 455 | 34.5 | Plus |
Dsim\GD23549-PA | 327 | GD23549-PA | 1..325 | 4..326 | 271 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17173-PA | 386 | GJ17173-PA | 1..368 | 3..391 | 553 | 34.4 | Plus |
Dvir\GJ11680-PA | 412 | GJ11680-PA | 1..392 | 3..386 | 362 | 28.3 | Plus |
Dvir\GJ21161-PA | 368 | GJ21161-PA | 1..203 | 4..206 | 162 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18278-PA | 399 | GK18278-PA | 2..395 | 15..404 | 668 | 36.9 | Plus |
Dwil\GK15456-PA | 412 | GK15456-PA | 7..389 | 7..384 | 331 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18423-PA | 408 | GE18423-PA | 1..408 | 1..408 | 1594 | 78.7 | Plus |
Dyak\GE19329-PA | 405 | GE19329-PA | 1..367 | 4..368 | 295 | 28 | Plus |
Dyak\GE12698-PA | 441 | GE12698-PA | 12..393 | 2..360 | 156 | 24.1 | Plus |
Translation from 68 to 1294
> LD20162.hyp MALIENLNDDCVLKIVDYLDLEDQLKLWKSSEPASRLRSLISYIWQRNRE YTIDYYTFNDDYELLNEFLQCIRFTVTELTLQYLAMDHLERWKGHTFPNM RQLIYLGDETSEIEGDADIAILVDCFPQLEAIRLSGKTTGNHISRWRNIR RLDLQLCWYLSPQGFEDICQNLRLQTLSIQWQKIEQNAYVRSICMLHELE ELELDIVYLNRDNISQLLSLPKLIKLRLHNFYQVDDLLCEIGSIRGQDVL TAAFSNNIWMRPTEVLAKLRNLRCLTLVDDEGCAAIDFSTITYCFPLLEQ LHLENSRIWVNADGIWDVLLACPRLREFSMINHVLYDEFFAFSKSTMNRA LNQRTKPLKMHFYKTGKDDLVSKHFKHPKLNVSFSATSSSYSQLPDECIE LEFKRPES*