Clone LD20211 Report

Search the DGRC for LD20211

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:202
Well:11
Vector:pBS SK-
Associated Gene/TranscriptTudor-SN-RA
Protein status:LD20211.pep: gold
Sequenced Size:3160

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7008 2002-11-21 Blastp of sequenced clone
CG7008 2003-01-01 Sim4 clustering to Release 3
Tudor-SN 2008-04-29 Release 5.5 accounting
Tudor-SN 2008-08-15 Release 5.9 accounting
Tudor-SN 2008-12-18 5.12 accounting

Clone Sequence Records

LD20211.complete Sequence

3160 bp (3160 high quality bases) assembled on 2002-11-21

GenBank Submission: BT003270

> LD20211.complete
ATTTTGAGAGCGGTTCTTCTCTTGGTCAAACTTCATTAGGTTGAAAGCGG
TGTTTAGCTCCGAAACGCAATCAACGCAATATTCCGCTATTGAAGCCTAG
TGCCACGGCCCTCTGCTAGTATCTCCCCCGCATTCAATAAAAAAATGGCA
ACAGCAGCGAACACCGCGACAGCTGCCGGAGCAGCTAAAGACGCCCCGCC
AGCGCCTACAAAGTCGTTGTCCGGCATTGTAAAGCAGGTTCTCTCCGGCG
ATACGGTAGTTATTCGCGCAACTAAGGGTGCCCCGCCTCCGGAGAAACAA
ATTACTTTCTCGCATGTCCTTGCCCCGAAGTTGGCCCGTCGTCCTGGCGC
TGGCGGAGACGAGACCAAGGACGAGCCCTGGGCTTGGGAGTCGCGGGAAT
TCTTGCGTAAAAAGTTGATAGGTGTGGAGGTGACTTTCACGTTTGACAAG
CCAGCCAACTCGAACCGGGAGTACGGTTTTGTGTGGATCGGTAAGGACAA
GGAAACCGGTGAAAATGTGGTCGAGTCGATTGTCCGAGAGGGCCTGGTGT
CGGTCCGTCGAGAGGGACGTCCCACAGCCGAGCAGCAAACACTCATCGAG
TTGGAGGACCAGGCGCGTGCAGCAGGCCGCGGAAAATGGTCGCCCACCGC
AAGTGCCGCCGACAAGGTTCGCAACATCAAGTGGTCCCATGAGAATCCCG
CACACCTGGTCGACATCTACGGAGGAAACCCCGTGAAGGCGATCATCGAG
CACGTGCGCGATGGATCCACGGTCCGAGCATTCTTGCTGCCGGACTTCCA
CTACATAACGCTAATGATTTCGGGCATCCGTTGTCCAGGAGTGAAATTAG
ATGCTGATGGCAAGCCCGACCTCAGTGTAAAGGTGCCTTTTGCTGACGAA
GCTCGCTACTATGTGGAAACCCGCCTGTTGCAACGCGATGTGGAAATCCG
ACTGGAATCGGTTAACAACTCTAACTTCATTGGAACTATTCTGTATCCCA
AGGGAAACATTGCAGAATCACTCCTGCGAGAGGGACTTGCCAAGTGTGTG
GACTGGTCAATGGCTGTTATGAAGACAGGCACCGATAAACTGCGGGCTGC
GGAGCGTTTTGCCAAGGAGAAGCGTCTTCGCCAATGGCAGGACTACCAAG
CTAAAACTCCTGCTTTCAACTCGAAGGAGAAAGACTTCTCTGGAACAGTG
GTGGAAGTCTTCAATGGCGATGCTATTAATGTACGTCTTTCCAATGGACA
AGTAAAGAAGGTTTTCTTCTCGTCTATCAGGCCGCCGCGTGACCAACGCG
CGGTTGTTGGCACCGATGGCGAGGAAATCGTCAAGGCACCACCACGCGGA
AAAAACTACAGACCACTTTACGAAATTCCACACATGTTCGATGCCCGTGA
GTTTCTGCGTAAAAAACTAATTAATAAAAAAGTTCAATGCAACCTGGACT
ACATCTCACCGCCGCGCGAAAACTTCCCTGAGAAATACTGCTATACCGTC
TCTATTGGCGGTCAGAACGTGGCTGAGGCAATGGTAGCCAAAGGTTTGGC
AACATGTGTTCGCTATCGCCAGGACGACGATCAGAGATCTTCCGCCTATG
ATCAATTGATTGCCGCCGAACAGCAAGCCATCAAGGGACTAAAGGGACTG
CACGCAAAGAAGGATAACGCCACACTGCGTGTTAACGACCTGACTGTTGA
TCATTCCCGAATTAAAGTTCAATACTTGCCATCGTGGCAGCGTGCTTTGC
GTACTGAAGCCATTGTAGAGTTTGTCGCCAGCGGATCCCGCCTCCGAATC
TTTGTACCGAAGGACAGTTGCCTGGTAACATTCCTGCTTGCTGGGATTTC
ATGTCCGCGTTCCTCTCGTCCAGCGCTTAATGGCGTTCCTGCCCAAGAGG
GGGAACCATTTGGCGACGAGGCTTTGACCTTTACCAGGGAGCGTGTCTTG
CAACGCGACGTTTCTGTTCATATCGATACCACCGACAAGGCAGGATCTTC
AGTGATTGGTTGGCTCTGGACGGACAGCGGCGCCAACTTGTCAGTTGCTC
TTGTCGAAGAGGGTCTTGCTGAAGTGCACTTTAGTGCTGAAAAATCTGAA
TACTACCGCCAGTTGAAGATTGCTGAAGACCGTGCCAAGGCCGCCAAAAA
GAACATCTGGACAAACTACGTAGAAGAAGTGCCTAAAGAAAAAACTGTCA
CCGAGGAAGAAAAGGAGGACAAGGTAGTGGCGGAGCGTAAAGTCAACTAC
GAAAACGTTATTGTCACTGAGATCACCGAAACTCTGACATTCTTCGCGCA
ATCTGTGGAGAGCGGATCCAAGCTAGAGTCGCTTATGAGCAAACTTCACG
CCGATTTCCAGTCCAACCCACCCATCGCTGGATCGTACACGCCAAAGCGT
GGTGACCTGGTGGCCGCTCAGTTTACACTTGATAATCAGTGGTATCGTGC
CAAGGTGGAACGCGTGCAGGGCAGTAATGCTACAGTCCTGTACATCGATT
ATGGAAACAAGGAGACACTTCCGACCAACCGTTTGGCAGCCCTGCCACCA
GCCTTCAGCAGCGAAAAGCCCTACGCTACGGAGTATGCTTTGGCCTTAGT
CGCCCTGCCAACTGACAACGAAGATAAGGAAGAAGCCTTGCGTGCCTTTT
CCGAAGACGTTTTGAACCATAAGGTTCAACTCAATGTCGAGCTAAAGGTG
ACTGGGTCGCCGAACTTGGCCACTCTTCGCGATCCAACTACTAAAGTCGA
TTTTGGAAAGCAGCTTGTAGCCGAGGGCCTTGTTCTGGCCGAACAGCGTG
GAGAGCGGAAGCTCAAGGAACTAGTGGACCAGTACAAAGCCGCGCAGGAA
GCAGCTCGGGTCGCGCATCTGGCCATCTGGAAGTACGGTGACATAACGCA
AGATGATGCGCCCGAGTTCCGCTAAAAGATGCCCGGAAACGTGGAGTAGG
CCTGTGGCGTGGAGCGCGTTGCTAGCCGAAAAGATTGTCTGCCACATACC
CGCCCTTTATATACATAACAACAAGCAAGAACTTAAAGAATATGAAATTA
CTAATTCTATCTATACACCAATATATATGATACATATACCACATTGGAAA
TACACAAATACATACATATGAGCAATGGCATGGAAAAAAAAAAAAAAAAA
AAAAAAAAAA

LD20211.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tudor-SN-RA 3166 Tudor-SN-RA 25..3159 1..3135 15675 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 260265..261703 2514..1076 7195 100 Minus
chr3L 24539361 chr3L 261931..262775 1079..235 4225 100 Minus
chr3L 24539361 chr3L 259249..259869 3133..2513 3105 100 Minus
chr3L 24539361 chr3L 264070..264308 239..1 1195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 260311..261749 2514..1076 7195 100 Minus
3L 28110227 3L 261977..262821 1079..235 4225 100 Minus
3L 28110227 3L 259293..259915 3135..2513 3115 100 Minus
3L 28110227 3L 264116..264354 239..1 1195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 260311..261749 2514..1076 7195 100 Minus
3L 28103327 3L 261977..262821 1079..235 4225 100 Minus
3L 28103327 3L 259293..259915 3135..2513 3115 100 Minus
3L 28103327 3L 264116..264354 239..1 1195 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:27:40 has no hits.

LD20211.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:28:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 260265..261700 1079..2514 100 <- Minus
chr3L 259249..259867 2515..3133 100 <- Minus
chr3L 261932..262772 238..1078 100 <- Minus
chr3L 264072..264308 1..237 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 1..2781 145..2925 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:17 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 1..2781 145..2925 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:35 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 1..2781 145..2925 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 1..2781 145..2925 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:12 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 1..2781 145..2925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:48 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 25..3157 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:16 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 25..3157 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:35 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 27..3159 1..3133 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 25..3157 1..3133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:12 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
Tudor-SN-RA 27..3159 1..3133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 259295..259913 2515..3133 100 <- Minus
3L 260311..261746 1079..2514 100 <- Minus
3L 261978..262818 238..1078 100 <- Minus
3L 264118..264354 1..237 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 259295..259913 2515..3133 100 <- Minus
3L 260311..261746 1079..2514 100 <- Minus
3L 261978..262818 238..1078 100 <- Minus
3L 264118..264354 1..237 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:33 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 259295..259913 2515..3133 100 <- Minus
3L 260311..261746 1079..2514 100 <- Minus
3L 261978..262818 238..1078 100 <- Minus
3L 264118..264354 1..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:35 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 259295..259913 2515..3133 100 <- Minus
arm_3L 260311..261746 1079..2514 100 <- Minus
arm_3L 261978..262818 238..1078 100 <- Minus
arm_3L 264118..264354 1..237 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:43 Download gff for LD20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 259295..259913 2515..3133 100 <- Minus
3L 260311..261746 1079..2514 100 <- Minus
3L 261978..262818 238..1078 100 <- Minus
3L 264118..264354 1..237 100   Minus

LD20211.pep Sequence

Translation from 144 to 2924

> LD20211.pep
MATAANTATAAGAAKDAPPAPTKSLSGIVKQVLSGDTVVIRATKGAPPPE
KQITFSHVLAPKLARRPGAGGDETKDEPWAWESREFLRKKLIGVEVTFTF
DKPANSNREYGFVWIGKDKETGENVVESIVREGLVSVRREGRPTAEQQTL
IELEDQARAAGRGKWSPTASAADKVRNIKWSHENPAHLVDIYGGNPVKAI
IEHVRDGSTVRAFLLPDFHYITLMISGIRCPGVKLDADGKPDLSVKVPFA
DEARYYVETRLLQRDVEIRLESVNNSNFIGTILYPKGNIAESLLREGLAK
CVDWSMAVMKTGTDKLRAAERFAKEKRLRQWQDYQAKTPAFNSKEKDFSG
TVVEVFNGDAINVRLSNGQVKKVFFSSIRPPRDQRAVVGTDGEEIVKAPP
RGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPPRENFPEKYCY
TVSIGGQNVAEAMVAKGLATCVRYRQDDDQRSSAYDQLIAAEQQAIKGLK
GLHAKKDNATLRVNDLTVDHSRIKVQYLPSWQRALRTEAIVEFVASGSRL
RIFVPKDSCLVTFLLAGISCPRSSRPALNGVPAQEGEPFGDEALTFTRER
VLQRDVSVHIDTTDKAGSSVIGWLWTDSGANLSVALVEEGLAEVHFSAEK
SEYYRQLKIAEDRAKAAKKNIWTNYVEEVPKEKTVTEEEKEDKVVAERKV
NYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTP
KRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAAL
PPAFSSEKPYATEYALALVALPTDNEDKEEALRAFSEDVLNHKVQLNVEL
KVTGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAA
QEAARVAHLAIWKYGDITQDDAPEFR*

LD20211.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24753-PA 928 GF24753-PA 20..928 18..926 4529 95.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14673-PA 925 GG14673-PA 1..925 1..926 4830 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15748-PA 930 GH15748-PA 31..930 27..926 4334 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tudor-SN-PB 926 CG7008-PB 1..926 1..926 4758 100 Plus
Tudor-SN-PA 926 CG7008-PA 1..926 1..926 4758 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12526-PA 929 GI12526-PA 1..929 1..926 4398 90.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16097-PA 928 GL16097-PA 18..928 17..926 4438 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20026-PA 928 GA20026-PA 18..928 17..926 4435 93.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14288-PA 926 GM14288-PA 1..926 1..926 4882 98.7 Plus
Dsec\GM11258-PA 438 GM11258-PA 1..418 373..790 2209 98.3 Plus
Dsec\GM11258-PA 438 GM11258-PA 40..308 78..339 227 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25717-PA 926 GD25717-PA 1..926 1..926 4892 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16044-PA 929 GJ16044-PA 13..929 15..926 4501 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17654-PA 878 GK17654-PA 30..878 25..926 4074 86.1 Plus
Dwil\GK23451-PA 876 GK23451-PA 27..876 24..926 4006 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21033-PA 926 GE21033-PA 1..926 1..926 4859 98.2 Plus

LD20211.hyp Sequence

Translation from 144 to 2924

> LD20211.hyp
MATAANTATAAGAAKDAPPAPTKSLSGIVKQVLSGDTVVIRATKGAPPPE
KQITFSHVLAPKLARRPGAGGDETKDEPWAWESREFLRKKLIGVEVTFTF
DKPANSNREYGFVWIGKDKETGENVVESIVREGLVSVRREGRPTAEQQTL
IELEDQARAAGRGKWSPTASAADKVRNIKWSHENPAHLVDIYGGNPVKAI
IEHVRDGSTVRAFLLPDFHYITLMISGIRCPGVKLDADGKPDLSVKVPFA
DEARYYVETRLLQRDVEIRLESVNNSNFIGTILYPKGNIAESLLREGLAK
CVDWSMAVMKTGTDKLRAAERFAKEKRLRQWQDYQAKTPAFNSKEKDFSG
TVVEVFNGDAINVRLSNGQVKKVFFSSIRPPRDQRAVVGTDGEEIVKAPP
RGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPPRENFPEKYCY
TVSIGGQNVAEAMVAKGLATCVRYRQDDDQRSSAYDQLIAAEQQAIKGLK
GLHAKKDNATLRVNDLTVDHSRIKVQYLPSWQRALRTEAIVEFVASGSRL
RIFVPKDSCLVTFLLAGISCPRSSRPALNGVPAQEGEPFGDEALTFTRER
VLQRDVSVHIDTTDKAGSSVIGWLWTDSGANLSVALVEEGLAEVHFSAEK
SEYYRQLKIAEDRAKAAKKNIWTNYVEEVPKEKTVTEEEKEDKVVAERKV
NYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTP
KRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAAL
PPAFSSEKPYATEYALALVALPTDNEDKEEALRAFSEDVLNHKVQLNVEL
KVTGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAA
QEAARVAHLAIWKYGDITQDDAPEFR*

LD20211.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tudor-SN-PB 926 CG7008-PB 1..926 1..926 4758 100 Plus
Tudor-SN-PA 926 CG7008-PA 1..926 1..926 4758 100 Plus