BDGP Sequence Production Resources |
Search the DGRC for LD20239
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 202 |
Well: | 39 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rcd6-RA |
Protein status: | LD20239.pep: gold |
Preliminary Size: | 2563 |
Sequenced Size: | 2559 |
Gene | Date | Evidence |
---|---|---|
CG11175 | 2001-01-01 | Release 2 assignment |
CG11175 | 2001-10-10 | Blastp of sequenced clone |
CG11175 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11175 | 2008-04-29 | Release 5.5 accounting |
CG11175 | 2008-08-15 | Release 5.9 accounting |
CG11175 | 2008-12-18 | 5.12 accounting |
2559 bp (2559 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061284
> LD20239.complete AGTGGTCGCAGAGTCGTTCGGCGAACCAAGTTCGTTTCCTCAGTCTTTCG AATTTCACTTTTAACCGTTTGCAAGCGCGCCAAGTTGAAGCGTACGCGTA CCGTTAGCGCGGCACGTTACGAACACCAACCTAGCATGACACCGCTCAAT TGGGCCGCTACTTAACGCTTTCATTCAACCCAGAAGAGGTCTGGACTCGA AACCCATTCGAACATAAACCAAGAACTAGAACACATCGCATCGCATCGTA TCGCATCGCACCACTGGCCTCCTCCTTTGAAAAAGGGGAACCAAGGCCAC CCTCCCGCTAGCCAGCATAATTTCTCTTGAAAAACCGCATTCACACATTT GCTTCACACCACAACCGCAACAACCGAATAACACGAATAATGAATTATCA GAAGGCCAGTGAAAAGCAGTCGTCGTCCTCATTGAAGAAGCGGCCGCCGG GCAACGGCAATAGCATACAAAACTTTTGGAACGATCGCATTATGGAGCGC TTCATAAAGGCGAATCTATTCATTATCTGCTGCGTGGTGGCGGTTCTATT GCTGATCGTCTATCTGGGTGCCTTCTCGTGTGAGGTCTCGTGGATACTGG AGGCCCACGGCGAGCTGCCCTTCGCCGCCTACACGCTCTGCTCGCTCTAC TTTGTCATGTTCGTGGCCACCACGATCCTTATCCACGGCCTGGTCAGCGG ACTCTGCTGGCCGTTGTTCGCCTGGTCGGGCATCATCGGTCTCCTCTCAA TTCCAGAGCTGGTCTTTGTCATGATCATGACCACACAGCACTGGGGTCTG CAATCTGTGCATGGATTAACGGAGCTCACCTCCTACCTGATTCGCCTCAT CATCAACTGCTTCGCGCTGATCTGTGTGATTCCCACGGGCATCAGGTGGC GACGGGAGACTCAGGTGTTGAGTCAGCTGCAAGGATTGGCCACCAGACTT TCCCTGCAGACTCCAGCGCCCAGTGTGCCCATTACAAAGGCAGATTCCCG GCGATCCAGCCAGCGGCTAAGTGGATTCGAGAATGCCGGCTACCAGCTGT GCGATGAAACAGCTTCCAAGTTGCCACTAGGGCCAGGAATGGGACTGGGC ATGAACAACCAGTGTGGAGGCAGTCAAGCATTTGGCTCGCAGAACGAATT CAACGCCAGCATGTTTGCACCCGCATTGGCACAGCAGTTCAACAATGCCA CGTTGATGCAGCGCGGCGGAACAGGCGGAGCAGGTGGTGGTCATCGCGCC CAGTCGCTGATGGATCTGCGCTGCACTCTGCCCGGCATGTACAATCCACG ACATGTGCTCGATACGGAGGATAAAAACGCCAAGTACTTCAACATCACCA TCGACGATTTGAAGAACAATCTCCACGACTCGCACCGACCATCGCCGCCT TCGCTGATCGGTTCCACCAGCAACGATCCCATCTACTGCTCCATTGAGCC CAAGCAGTTGACACCGCCACCGGCACAGCAGAGGAGCCACCATCGTCCAC GCGGCACACACAAGCAGCCACCACCGGGTAAACTGTCCCGGAATTGCGTA TCCCTGGAGAACCTTGACGGGATCAGCAAGGTGCAGAATGATCTGACCGC CTACGGGAACAATCTACTCCAGAACTACACGCAGCAGCAGCAGTATTACC TGGCCATGCTGCTTCACCAGCAGCAGCAGCAACAGCTGCACCACCAGCAG GCTGGCGGCATTTACCGCAGGCCATCCAATTGCAGCTCCACTGGCGGATT CGCCGGCACCGTGCTGGCCCAGCCGATGCAGCGACGCGGCTCCACGCACA GCCAGCAGATGCAGTATTACGGGGGCTTTGGCTATGCCAACTACACCAAT CCGTACATCACGGCCAACAGCAAGTTGTCGCTGGGCAACGAGTCCGACGA TTACCGGAAGTACCGCGATGTGGCTCTTTGAGTCCGTTTTTTTGGTTCTG GAAACCGGATCCCAATCGATCATCAGTCAGCGTTTAGGTTAAGCTCACTA GTTGTAGGATATGCTCGATCTAGAATGAGATTCCTCGGAATAACGACCAA AGAGCCACAAACTAACTCAGTTTCAGTTCGTAGACTAACGTTACACTGCG AGAATCGTATAGCGCGTTTATGCGCCAGTCAATTTGTAGCTTAAATGGGT CTGCATTCAGTTTTATTTGCTTTACTGAATAACACGACCTATTTGCAAAT AAAAGTGTACTAAATATGAGACTCCATGGGGATATAATTTTATATGCAAA TAAAAGTAATCGTAATAGTAAATATCACGAAATATCAGACGTACTCAAAA ATATAAATAGATATTTCTAAAACAAACAAATATCAAAAAGCATACCCCCC CAATAAGAGAGGCACTGTATGAAAATTGCCCAAGTCTAGTTCTAAGAATC GAACACAAATGAACATTGACATTCATTGTTTATTATAGTTAATAGGAATA CGAATAACAATACTCTGATCGACAGTCTAACCATCCACAGATCAAAAAGT GTACATACTTGTAATAAAAGGCGTAACTGTTTTCTCACTTGAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd6-RA | 2631 | Rcd6-RA | 91..2631 | 1..2541 | 12705 | 100 | Plus |
Rcd6-RB | 3168 | Rcd6-RB | 751..3168 | 124..2541 | 12090 | 100 | Plus |
CG16742.a | 4644 | CG16742.a | 4512..4644 | 2544..2412 | 665 | 100 | Minus |
Rcd6-RB | 3168 | Rcd6-RB | 67..189 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16514890..16516638 | 2541..794 | 8380 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 16517403..16517833 | 554..124 | 2125 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 16516744..16516985 | 795..554 | 1195 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 16520064..16520186 | 123..1 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20628183..20629933 | 2544..794 | 8755 | 100 | Minus |
2R | 25286936 | 2R | 20630684..20631114 | 554..124 | 2155 | 100 | Minus |
2R | 25286936 | 2R | 20630025..20630266 | 795..554 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 20633351..20633473 | 123..1 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20629382..20631132 | 2544..794 | 8755 | 100 | Minus |
2R | 25260384 | 2R | 20631883..20632313 | 554..124 | 2155 | 100 | Minus |
2R | 25260384 | 2R | 20631224..20631465 | 795..554 | 1210 | 100 | Minus |
2R | 25260384 | 2R | 20634550..20634672 | 123..1 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6918 | 1612..1740 | 189 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6825 | 1623..1699 | 175 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6805 | 1611..1700 | 172 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2417 | 1596..1700 | 163 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1493..1587 | 1605..1698 | 157 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6913 | 1632..1700 | 156 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6838 | 1583..1700 | 149 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6858 | 1549..1699 | 147 | 61.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1077..1163 | 1612..1698 | 147 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2662 | 1594..1699 | 146 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2384 | 1623..1700 | 144 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2531 | 1612..1700 | 137 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6784 | 1636..1700 | 136 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2957 | 1636..1873 | 134 | 55.4 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 855..1015 | 1543..1705 | 134 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2392 | 1659..1740 | 133 | 68.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 1632..1700 | 133 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2476 | 1567..1699 | 130 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 1659..1871 | 130 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2871 | 1601..1698 | 127 | 65.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1120 | 1665..1700 | 126 | 83.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3210..3334 | 1584..1710 | 124 | 59.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 67..228 | 1572..1736 | 116 | 60.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9097..9258 | 1572..1736 | 116 | 60.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16514890..16515731 | 1701..2541 | 99 | == | Minus |
chr2R | 16515802..16516637 | 795..1630 | 98 | <- | Minus |
chr2R | 16516745..16516984 | 555..794 | 99 | <- | Minus |
chr2R | 16517403..16517833 | 124..554 | 93 | <- | Minus |
chr2R | 16520064..16520186 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11175-RA | 1..1542 | 390..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RB | 1..1542 | 390..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RA | 1..1542 | 390..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11175-RA | 1..1542 | 390..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RA | 1..1542 | 390..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11175-RA | 1..2541 | 1..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RA | 30..2570 | 1..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RA | 34..2574 | 1..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11175-RA | 1..2541 | 1..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd6-RA | 34..2574 | 1..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20633351..20633473 | 1..123 | 100 | Minus | |
2R | 20628186..20629932 | 795..2541 | 100 | <- | Minus |
2R | 20630026..20630265 | 555..794 | 100 | <- | Minus |
2R | 20630684..20631114 | 124..554 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20633351..20633473 | 1..123 | 100 | Minus | |
2R | 20628186..20629932 | 795..2541 | 100 | <- | Minus |
2R | 20630026..20630265 | 555..794 | 100 | <- | Minus |
2R | 20630684..20631114 | 124..554 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20633351..20633473 | 1..123 | 100 | Minus | |
2R | 20628186..20629932 | 795..2541 | 100 | <- | Minus |
2R | 20630026..20630265 | 555..794 | 100 | <- | Minus |
2R | 20630684..20631114 | 124..554 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16515691..16517437 | 795..2541 | 100 | <- | Minus |
arm_2R | 16517531..16517770 | 555..794 | 100 | <- | Minus |
arm_2R | 16518189..16518619 | 124..554 | 100 | <- | Minus |
arm_2R | 16520856..16520978 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20629385..20631131 | 795..2541 | 100 | <- | Minus |
2R | 20631225..20631464 | 555..794 | 100 | <- | Minus |
2R | 20631883..20632313 | 124..554 | 100 | <- | Minus |
2R | 20634550..20634672 | 1..123 | 100 | Minus |
Translation from 389 to 1930
> LD20239.pep MNYQKASEKQSSSSLKKRPPGNGNSIQNFWNDRIMERFIKANLFIICCVV AVLLLIVYLGAFSCEVSWILEAHGELPFAAYTLCSLYFVMFVATTILIHG LVSGLCWPLFAWSGIIGLLSIPELVFVMIMTTQHWGLQSVHGLTELTSYL IRLIINCFALICVIPTGIRWRRETQVLSQLQGLATRLSLQTPAPSVPITK ADSRRSSQRLSGFENAGYQLCDETASKLPLGPGMGLGMNNQCGGSQAFGS QNEFNASMFAPALAQQFNNATLMQRGGTGGAGGGHRAQSLMDLRCTLPGM YNPRHVLDTEDKNAKYFNITIDDLKNNLHDSHRPSPPSLIGSTSNDPIYC SIEPKQLTPPPAQQRSHHRPRGTHKQPPPGKLSRNCVSLENLDGISKVQN DLTAYGNNLLQNYTQQQQYYLAMLLHQQQQQQLHHQQAGGIYRRPSNCSS TGGFAGTVLAQPMQRRGSTHSQQMQYYGGFGYANYTNPYITANSKLSLGN ESDDYRKYRDVAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12754-PA | 508 | GF12754-PA | 1..508 | 1..513 | 2387 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20844-PA | 513 | GG20844-PA | 1..513 | 1..513 | 2712 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19897-PA | 503 | GH19897-PA | 1..503 | 1..513 | 2043 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd6-PB | 513 | CG11175-PB | 1..513 | 1..513 | 2725 | 100 | Plus |
Rcd6-PA | 513 | CG11175-PA | 1..513 | 1..513 | 2725 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19853-PA | 519 | GI19853-PA | 1..519 | 1..513 | 1920 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17436-PA | 524 | GL17436-PA | 1..524 | 1..513 | 2290 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10817-PA | 524 | GA10817-PA | 1..524 | 1..513 | 2301 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19773-PA | 513 | GM19773-PA | 1..513 | 1..513 | 2733 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25263-PA | 513 | GD25263-PA | 1..513 | 1..513 | 2740 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18850-PA | 520 | GJ18850-PA | 1..520 | 1..513 | 2002 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21828-PA | 504 | GK21828-PA | 1..504 | 1..513 | 2134 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13784-PA | 514 | GE13784-PA | 1..514 | 1..513 | 2681 | 97.5 | Plus |
Translation from 389 to 1930
> LD20239.hyp MNYQKASEKQSSSSLKKRPPGNGNSIQNFWNDRIMERFIKANLFIICCVV AVLLLIVYLGAFSCEVSWILEAHGELPFAAYTLCSLYFVMFVATTILIHG LVSGLCWPLFAWSGIIGLLSIPELVFVMIMTTQHWGLQSVHGLTELTSYL IRLIINCFALICVIPTGIRWRRETQVLSQLQGLATRLSLQTPAPSVPITK ADSRRSSQRLSGFENAGYQLCDETASKLPLGPGMGLGMNNQCGGSQAFGS QNEFNASMFAPALAQQFNNATLMQRGGTGGAGGGHRAQSLMDLRCTLPGM YNPRHVLDTEDKNAKYFNITIDDLKNNLHDSHRPSPPSLIGSTSNDPIYC SIEPKQLTPPPAQQRSHHRPRGTHKQPPPGKLSRNCVSLENLDGISKVQN DLTAYGNNLLQNYTQQQQYYLAMLLHQQQQQQLHHQQAGGIYRRPSNCSS TGGFAGTVLAQPMQRRGSTHSQQMQYYGGFGYANYTNPYITANSKLSLGN ESDDYRKYRDVAL*