BDGP Sequence Production Resources |
Search the DGRC for LD20271
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 202 |
Well: | 71 |
Vector: | pBS SK- |
Associated Gene/Transcript | Cks30A-RA |
Protein status: | LD20271.pep: gold |
Preliminary Size: | 1295 |
Sequenced Size: | 1147 |
Gene | Date | Evidence |
---|---|---|
CG3738 | 2001-01-01 | Release 2 assignment |
CG3738 | 2001-10-10 | Blastp of sequenced clone |
CG3738 | 2003-01-01 | Sim4 clustering to Release 3 |
Cks30A | 2008-04-29 | Release 5.5 accounting |
Cks30A | 2008-08-15 | Release 5.9 accounting |
Cks30A | 2008-12-18 | 5.12 accounting |
1147 bp (1147 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061285
> LD20271.complete CTTATATCTAGCGCGTCACTTGATTTTAAAAATTTCCAAACCAAACGTAA ATTCCAGCACAATAATCAACCTGAATAGTGATAAAAACCGAGAAACTCGT ACCTAAAAAGCAGTTGCAGTGTTTGCCAATTGATTCAACACCACGGCTAA AGTTGCGACATCGAATCCGCAGGAGCCGCCTTCGACGGTCCAAAAAAGAG ACGCCAAATTCCGCAGCGCGCACTTCGCCTTTCCATTGCATCGAAATTCC TGGAATTTCCAGGCGCAGACACGATGAGCAAGGACATTTACTACTCCGAC AAGTACTACGATGAGCAGTTCGAGTACAGACATGTGGTTTTGCCAAAAGA GCTGGTAAAAATGGTGCCCAAGACTCATCTGATGACGGAGGCCGAGTGGC GATCAATTGGCGTACAGCAGTCGCGCGGATGGATCCACTACATGATCCAT AAGCCGGAGCCCCACATCCTCCTGTTTCGGCGACCCAAAACGGATTAGAT AACCGGCGGTAGCAGCAGCAGTAGCAACAACAACTGCATCAGATACACAT ACTTCGAAACCACATAGCCTGTAGCACATACCTATATATCCGGCAGCTGC TGCCGATATTCTGTATTGGCGGTGGTGGTGGTTGCTGCCAAACAAACAAC CAACTGTTGCACAAACATCAACAACATCATCATCATCATCATTATCATAG GTACTCAGGAATCCCCTAGAAACTACTTATTGTGCTGTTTGTGCTTTGTA ATACTCTCTTTTTACCATGTTTGCCCCGCATTATTCCCTTTTATATATAT AGCACCTAGAGCTAATGATAAGTTTGCCATTTGTAATACTCTCTTTTTAC CATGTTTGCCCCGCATTATCCCCTTTTATATATGTAGCACCTAGAGCTAA TGATGTTTGCCATTTTCGTACACCTTAGTGCCGTTTCCGAATCATTCCTC AAGTTCGCACGAATTTTATCATACTTTATGTTGCCATTTCGAAACGGAAG CGAAAAGAAGAATTTTGCTCACTTCTTTTAAGCTTAAATGAAATCTGATT TGTGATCTTGAAATTTTTAATCAATAATACATATGTTTACACATAATATA ATGAACTTAAAATAAATATTTTTAATGTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cks30A-RA | 1298 | Cks30A-RA | 26..1154 | 1..1129 | 5645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9330114..9330916 | 326..1128 | 4000 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 9329717..9330045 | 1..329 | 1645 | 100 | Plus |
chr2L | 23010047 | chr2L | 9330533..9330607 | 830..904 | 345 | 97.3 | Plus |
chr2L | 23010047 | chr2L | 9330618..9330692 | 745..819 | 345 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9331179..9331982 | 326..1129 | 4020 | 100 | Plus |
2L | 23513712 | 2L | 9330782..9331110 | 1..329 | 1645 | 100 | Plus |
2L | 23513712 | 2L | 9331598..9331672 | 830..904 | 345 | 97.3 | Plus |
2L | 23513712 | 2L | 9331683..9331757 | 745..819 | 345 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2544 | 502..696 | 143 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2401 | 511..564 | 137 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2253..2487 | 358..600 | 133 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2644 | 511..697 | 130 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2466 | 511..600 | 125 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2791..2836 | 502..547 | 122 | 73.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 968..1012 | 500..544 | 117 | 73.3 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 528..569 | 510..550 | 117 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2354 | 511..542 | 115 | 84.4 | Plus |
1360 | 3409 | 1360 1360 3409bp | 2499..2553 | 1097..1042 | 115 | 69.6 | Minus |
TART-A | 13424 | TART-A 13424bp | 910..939 | 513..542 | 114 | 86.7 | Plus |
TART-A | 13424 | TART-A 13424bp | 12088..12117 | 513..542 | 114 | 86.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9329717..9330045 | 1..329 | 100 | -> | Plus |
chr2L | 9330118..9330916 | 330..1128 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 1..225 | 274..498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 1..225 | 274..498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 1..225 | 274..498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 1..225 | 274..498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 16..1143 | 1..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 16..1143 | 1..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 20..1147 | 1..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 16..1143 | 1..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cks30A-RA | 20..1147 | 1..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9330782..9331110 | 1..329 | 100 | -> | Plus |
2L | 9331183..9331981 | 330..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9330782..9331110 | 1..329 | 100 | -> | Plus |
2L | 9331183..9331981 | 330..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9330782..9331110 | 1..329 | 100 | -> | Plus |
2L | 9331183..9331981 | 330..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9330782..9331110 | 1..329 | 100 | -> | Plus |
arm_2L | 9331183..9331981 | 330..1128 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9330782..9331110 | 1..329 | 100 | -> | Plus |
2L | 9331183..9331981 | 330..1128 | 100 | Plus |
Translation from 273 to 497
> LD20271.hyp MSKDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQS RGWIHYMIHKPEPHILLFRRPKTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cks30A-PA | 74 | CG3738-PA | 1..74 | 1..74 | 407 | 100 | Plus |
Cks85A-PC | 96 | CG9790-PC | 6..73 | 5..72 | 288 | 67.6 | Plus |
Cks85A-PB | 96 | CG9790-PB | 6..73 | 5..72 | 288 | 67.6 | Plus |
Cks85A-PA | 96 | CG9790-PA | 6..73 | 5..72 | 288 | 67.6 | Plus |
Translation from 273 to 497
> LD20271.pep MSKDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQS RGWIHYMIHKPEPHILLFRRPKTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22718-PA | 75 | GF22718-PA | 1..74 | 1..74 | 384 | 97.3 | Plus |
Dana\GF16842-PA | 98 | GF16842-PA | 3..75 | 2..74 | 282 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25340-PA | 74 | GG25340-PA | 1..74 | 1..74 | 390 | 100 | Plus |
Dere\GG17431-PA | 96 | GG17431-PA | 3..71 | 2..70 | 275 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13319-PA | 75 | GH13319-PA | 1..74 | 1..74 | 377 | 95.9 | Plus |
Dgri\GH19019-PA | 99 | GH19019-PA | 3..71 | 2..70 | 281 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cks30A-PA | 74 | CG3738-PA | 1..74 | 1..74 | 407 | 100 | Plus |
Cks85A-PC | 96 | CG9790-PC | 6..73 | 5..72 | 288 | 67.6 | Plus |
Cks85A-PB | 96 | CG9790-PB | 6..73 | 5..72 | 288 | 67.6 | Plus |
Cks85A-PA | 96 | CG9790-PA | 6..73 | 5..72 | 288 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12276-PA | 75 | GI12276-PA | 1..74 | 1..74 | 371 | 93.2 | Plus |
Dmoj\GI22832-PA | 93 | GI22832-PA | 3..71 | 2..70 | 274 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12136-PA | 91 | GL12136-PA | 3..71 | 2..70 | 278 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25305-PA | 75 | GA25305-PA | 1..74 | 1..74 | 368 | 93.2 | Plus |
Dpse\GA22037-PA | 91 | GA22037-PA | 3..71 | 2..70 | 278 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17424-PA | 74 | GM17424-PA | 1..74 | 1..74 | 390 | 100 | Plus |
Dsec\GM26323-PA | 96 | GM26323-PA | 3..71 | 2..70 | 275 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23595-PA | 74 | GD23595-PA | 1..74 | 1..74 | 390 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17855-PA | 75 | GJ17855-PA | 1..74 | 1..74 | 374 | 94.6 | Plus |
Dvir\GJ24587-PA | 93 | GJ24587-PA | 3..71 | 2..70 | 280 | 66.7 | Plus |