Clone LD20292 Report

Search the DGRC for LD20292

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:202
Well:92
Vector:pBS SK-
Associated Gene/TranscriptCG32350-RA
Protein status:LD20292.pep: gold
Preliminary Size:2739
Sequenced Size:2870

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32350 2002-03-19 Blastp of sequenced clone
CG32350 2003-01-01 Sim4 clustering to Release 3
CG32350 2008-04-29 Release 5.5 accounting
CG32350 2008-08-15 Release 5.9 accounting
CG32350 2008-12-18 5.12 accounting

Clone Sequence Records

LD20292.complete Sequence

2870 bp (2870 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094791

> LD20292.complete
ATTTTGTTGGCCAACCCGTAACGTCACACATGTTCCACTATAAGAATAAA
TATACACATTAATAATAGTATCATCGCATAATTATATGAAACTATTGACA
GAATGGATATAAGTGTCTTTGAATGGAAGAAAGTGGATCTTTTCAATATA
ATCGTCGTACCATTTGTAAAAATTCCGAACACGGCAGAAATATCGTGCTA
CTGCTTTCCCGAATCAAAATCAAGCACTGAGGAAAGAAATATAAAATTAG
TAATTTGTGATAAGAACAGAAATATTCTTATTTACCTTTCAAATTGGGAG
TGTATTACCTTCAAATCTCCATCCACGCGGAAAGCTATTGCTCTTTGTTC
CCTTACCAGCAATAACAGCCTTGCGACTGTCACACCGGATATCAATAATG
GTATTCACATTGATATATTTGACCTTAATAGATTAACAAAAAAGCAAGCA
GCTCCAATAATTGCATCTGCATATACTCAGCCTTCAAGTACGCCCTTATG
CCTCAACGCAGACGTCATTGACGATAAATTGTTTGCGTTGGCGATAGGAT
TGGGAAATGGTGATATTCTTTTGCATTATGGAAAAATCACAAAAAATTTT
TCTGCAAATATTCGCCAACATACTGTTTCTGGAAACGCAGTCAATGGAAT
ACATTTTGATTTCAAAACACAACCTTTAGATACAACTCAAATAATGTTTG
TGACATGTGTTCAAGGAGTTTATTGTTTTATGTTAAAAGAGAAATGCATA
ATGGATACAAAATTTGTACTTGATAATGATAAAGGTAATCTTAATTACCG
CAGTATAATGTGCAAGGCTGGAGGTGGCGAAATAAATGATTCAATGTTGG
TTGTGGGACGGGCAGACGCTGTTTATTGCTACACTCCTGAGGGAAGGGGT
CCTTGTTTTGCTATCGAAGGAGCAAAGGAATGCCTGGCTTGGGTAGGCCA
TTACCTAATCGTCGGCGTCAAAAATTCAAACTTAAAGCAGAATGCAACGA
CACTAATTGTTTTAGATACGGAAAACAAAATAATAGTTTTTCAAAGGCAA
TTTCAGGAATTGTTTTATGTAATCAGTGAAAACAATTTTTGTTATATTGT
TACGAATTCTGGCGACACGGATGCTTGCAACATGTTAATGTTAGAAAAAA
ACAGCATAGATGTTAATATACGTCTCTTAGTTGAAAAACATATGTATAAC
ATTGCATTGAGATTGTTGCATCGAGAAGGCTATACTTCATCGCCAGAAAC
TGCATTGGTACGATTTCAGTACGGAAATCACTTACTTCAAAAAGGCGACT
TCAGTAGAGCTACTCAAGAATTTATTAAAACCATCGGTTTTATTAAACCG
TATGCTGTCATTTCGAAGCTTTTATATTCCAGATACAATACTTATTTACT
AAATTACTTGACTGAATGGAAAAAAAAGAATGAGAGTTCAAGCTGTCATA
CAAGACTTATTGAATGCTGTATTAAGCGTGATCAAATTGAACATGAAATG
CAGCAAGATGATTTCAAGCACTATAAAAGCCCTGCGAAAATAAAACATCT
TGCAACCCTATCAAAAATGTATTTCGCATGTACCCCGTCCAATCAGGTCC
CAGTTGAAGAAGAGCATTTATTACATCAATTGCTAGAATATGGACCTGCA
TCTCTAGCAGTTGATCTCACTACTTATTTAAATAATATAACATTTGAAAA
TGTAAAAGAATCAAAAAATATTCTTTCGTTTTGTTCCATTTTAGCAGATC
ATAACGATTATTGCGCTAAAATGTTAGCTAAAATCATAGAAGCTTTTCCA
GTCTGTGACGAAAAACTATTGTTTTATTTGCTGGTCTTTTATTTCAAACT
CTGGAGATTAGATAAAGTAACTTCAAGTTTTGTCTCAGATTTTATAAAGA
CACATAGCTTGCGGATGGACAAAACTATCATTGTAAGTAGGCTTTATACA
TTTTTTAATGTTACACAAAGAATACACGGCCATCAAAAAAATACAGGCAC
ATTGCATAACGAAACAATAGACAAGTGCATTGAAAACCTAATAAAAAATA
ATCCCGATGTGGCTTTAAATGAAAATTTAAGTAAAAGATCATTTCTCATG
ATGTTAAAAAGTTCTTGCTCTACTGAAGAAATAAAAGCAATAAAGATAAA
ACCAATATTTAAGGATCGATTATTGCGAAGTATAGTTGATTCTGCAAATG
AATTAAAGTTAGTTGAGAATTTCAACGAAAAGATTAAGAGGTCGAGATCC
ATGCTGTCTCTCTATACAAACAATCCAATCGAGTTTCGTAATGATAAATG
TGACATCTGTCGTGAAATGTTAAGTATGCAGTCCATTTATTTTCTTTGTC
AACATTCCTTTCATGAAGAATGCCTCAATTACAAATCGACCAAACGCCAA
GAAAAGTTTTTATGTATTATATGTAAAACAAGAAATTTGTTAAGTCCAAA
ACATTCTTCCAATTTTTCCTGTGATTCTTCAGATACTATTGCAGTACTTG
CAAAAATAGTTTCTATAGGAAATAAGTTAGAAACTAAACTTATGATAAGA
GGACGGCAAAAAAGCGATGGCGTTACTTGTAACCCTTTTAATTAAAATAT
AAATATTATATTATAAATTTTATATTTATATAAAAAAGCTATATCTGAAA
TTATTTTCTTTAATTTTCAATGTATTATTCGTTAAAATAAATAAATGTAC
ATAAATCGATACATTATATGGCACTGCCAAGCCACCAATTTTCTATTTTA
AATGTGAGGTCTTTCTTAGAAATTAAAAAAAAAAACAATGTAATAGCAAA
ACTAAAAACAAAAATAATAAATTTTCTGGCAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD20292.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32350-RA 2837 CG32350-RA 1..2835 1..2835 14175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 23136588..23139421 2834..1 14170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23147655..23150489 2835..1 14175 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 23140755..23143589 2835..1 14175 100 Minus
Blast to na_te.dros performed 2019-03-16 15:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1248..1391 2686..2827 183 60.4 Plus

LD20292.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:32:18 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 23136656..23136784 2638..2766 100 == Minus
chr3L 23136837..23139421 1..2585 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:39 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2493 103..2595 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:53 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2493 103..2595 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:13:10 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2493 103..2595 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:09 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2493 103..2595 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:44:02 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2493 103..2595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:19 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2834 1..2834 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:53 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2834 1..2834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:10 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 11..2844 1..2834 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:09 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 1..2834 1..2834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:44:02 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
CG32350-RA 11..2844 1..2834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:18 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23147656..23150489 1..2834 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:18 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23147656..23150489 1..2834 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:18 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23147656..23150489 1..2834 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:10 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23140756..23143589 1..2834 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:37 Download gff for LD20292.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23140756..23143589 1..2834 100   Minus

LD20292.pep Sequence

Translation from 102 to 2594

> LD20292.pep
MDISVFEWKKVDLFNIIVVPFVKIPNTAEISCYCFPESKSSTEERNIKLV
ICDKNRNILIYLSNWECITFKSPSTRKAIALCSLTSNNSLATVTPDINNG
IHIDIFDLNRLTKKQAAPIIASAYTQPSSTPLCLNADVIDDKLFALAIGL
GNGDILLHYGKITKNFSANIRQHTVSGNAVNGIHFDFKTQPLDTTQIMFV
TCVQGVYCFMLKEKCIMDTKFVLDNDKGNLNYRSIMCKAGGGEINDSMLV
VGRADAVYCYTPEGRGPCFAIEGAKECLAWVGHYLIVGVKNSNLKQNATT
LIVLDTENKIIVFQRQFQELFYVISENNFCYIVTNSGDTDACNMLMLEKN
SIDVNIRLLVEKHMYNIALRLLHREGYTSSPETALVRFQYGNHLLQKGDF
SRATQEFIKTIGFIKPYAVISKLLYSRYNTYLLNYLTEWKKKNESSSCHT
RLIECCIKRDQIEHEMQQDDFKHYKSPAKIKHLATLSKMYFACTPSNQVP
VEEEHLLHQLLEYGPASLAVDLTTYLNNITFENVKESKNILSFCSILADH
NDYCAKMLAKIIEAFPVCDEKLLFYLLVFYFKLWRLDKVTSSFVSDFIKT
HSLRMDKTIIVSRLYTFFNVTQRIHGHQKNTGTLHNETIDKCIENLIKNN
PDVALNENLSKRSFLMMLKSSCSTEEIKAIKIKPIFKDRLLRSIVDSANE
LKLVENFNEKIKRSRSMLSLYTNNPIEFRNDKCDICREMLSMQSIYFLCQ
HSFHEECLNYKSTKRQEKFLCIICKTRNLLSPKHSSNFSCDSSDTIAVLA
KIVSIGNKLETKLMIRGRQKSDGVTCNPFN*

LD20292.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19992-PA 712 GF19992-PA 1..503 1..498 963 42.1 Plus
Dana\GF19992-PA 712 GF19992-PA 507..686 625..808 323 40.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13158-PA 841 GG13158-PA 1..841 1..830 3436 78.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19582-PA 768 GH19582-PA 9..758 96..830 1033 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vps11-PA 830 CG32350-PA 1..830 1..830 4352 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23791-PA 825 GI23791-PA 2..789 3..776 1076 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20510-PA 850 GL20510-PA 1..807 1..806 1904 48 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25617-PA 850 GA25617-PA 1..807 1..806 1894 48 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22487-PA 834 GM22487-PA 1..834 1..830 3982 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23593-PA 829 GJ23593-PA 1..815 3..806 1152 35.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10848-PA 884 GK10848-PA 1..834 3..806 1444 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17997-PA 844 GE17997-PA 1..844 1..830 3443 77 Plus

LD20292.hyp Sequence

Translation from 102 to 2594

> LD20292.hyp
MDISVFEWKKVDLFNIIVVPFVKIPNTAEISCYCFPESKSSTEERNIKLV
ICDKNRNILIYLSNWECITFKSPSTRKAIALCSLTSNNSLATVTPDINNG
IHIDIFDLNRLTKKQAAPIIASAYTQPSSTPLCLNADVIDDKLFALAIGL
GNGDILLHYGKITKNFSANIRQHTVSGNAVNGIHFDFKTQPLDTTQIMFV
TCVQGVYCFMLKEKCIMDTKFVLDNDKGNLNYRSIMCKAGGGEINDSMLV
VGRADAVYCYTPEGRGPCFAIEGAKECLAWVGHYLIVGVKNSNLKQNATT
LIVLDTENKIIVFQRQFQELFYVISENNFCYIVTNSGDTDACNMLMLEKN
SIDVNIRLLVEKHMYNIALRLLHREGYTSSPETALVRFQYGNHLLQKGDF
SRATQEFIKTIGFIKPYAVISKLLYSRYNTYLLNYLTEWKKKNESSSCHT
RLIECCIKRDQIEHEMQQDDFKHYKSPAKIKHLATLSKMYFACTPSNQVP
VEEEHLLHQLLEYGPASLAVDLTTYLNNITFENVKESKNILSFCSILADH
NDYCAKMLAKIIEAFPVCDEKLLFYLLVFYFKLWRLDKVTSSFVSDFIKT
HSLRMDKTIIVSRLYTFFNVTQRIHGHQKNTGTLHNETIDKCIENLIKNN
PDVALNENLSKRSFLMMLKSSCSTEEIKAIKIKPIFKDRLLRSIVDSANE
LKLVENFNEKIKRSRSMLSLYTNNPIEFRNDKCDICREMLSMQSIYFLCQ
HSFHEECLNYKSTKRQEKFLCIICKTRNLLSPKHSSNFSCDSSDTIAVLA
KIVSIGNKLETKLMIRGRQKSDGVTCNPFN*

LD20292.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32350-PA 830 CG32350-PA 1..830 1..830 4352 100 Plus