BDGP Sequence Production Resources |
Search the DGRC for LD20358
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 203 |
Well: | 58 |
Vector: | pBS SK- |
Associated Gene/Transcript | Pex16-RA |
Protein status: | LD20358.pep: gold |
Preliminary Size: | 1526 |
Sequenced Size: | 1423 |
Gene | Date | Evidence |
---|---|---|
CG3947 | 2001-01-01 | Release 2 assignment |
CG3947 | 2001-10-10 | Blastp of sequenced clone |
CG3947 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3947 | 2008-04-29 | Release 5.5 accounting |
CG3947 | 2008-08-15 | Release 5.9 accounting |
CG3947 | 2008-12-18 | 5.12 accounting |
1423 bp (1423 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061286
> LD20358.complete ATTTGATTACCTGTAGACCGAAACACCTCATTATTTTTATTATTTGGAGG AACAGACAATATTTTCCGGATATAATGGACACTCTGAAGGGCATGCTGAA GGCGTACGAGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTG AGACCACAGCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCA TCAAATGTGGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTT CTACAACGACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGG TGATCCACCTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACG ACGCTCGAATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTT CGGTCAATCCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGG CAGCGGGCCGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACC TCACCGCCCATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTC GGGGGATGGTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACT CCATTACCTTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAG GGTGCTCCTCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAA TGAAGCGGCGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACC TGTATATATCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGC CGGAGAAGTTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAG CATTCACCTCTACCGCCAGCATCGCGACCTAATGTCCAAGCAACAAAAAC TGGAGCTGAGCAGGCGATGCATAAACATCATGTACTTCCTGGTCCGATCG CCGTTCTATGACAGCTTCACCAAATCCAGACTGGAGCGGATCCTCGACTT TGTGGCCACAAGTGTGCCCATTGCTAAGGTGGTTGCCAAACCCCTTAAAG ATTACATTCCCACGTGGCAAAGCACTTACTTCTATCTGTGGTCCACTTAG GCATTTCAGGTAGAGCGTTAGTATTCCCCTAGGCTAAGTTTTAAAGTTAC AGGTGTGGACGCATTCGGAGTGTTGAGGGTGGGTTGAGTTTTGGTCCTTG AAAAGTTGTTTGCACAATAAAACGATGGAGTAATTTTCGATATGTTTATA GCCAACTTTCATATTCCTTGAATTGACCCACCCACATGGCATTGCCGCTC TTGAGGTGAAAAATGATTATACATCCCAATTGCTTTGTATGGCTTTTTAA ATTATATATGGAACAATATTTATACACATACAATTAAACGAAATTTTCCA CTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3947-RA | 1609 | CG3947-RA | 123..1526 | 1..1404 | 7020 | 100 | Plus |
Pitslre.b | 3093 | Pitslre.b | 2921..3093 | 1404..1232 | 865 | 100 | Minus |
Pitslre-RC | 3357 | Pitslre-RC | 3185..3357 | 1404..1232 | 865 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dfun\Isfun-1 | 928 | Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). | 482..551 | 1317..1390 | 116 | 67.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20765786..20767002 | 187..1403 | 100 | <- | Minus |
chr3L | 20767063..20767248 | 1..186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3947-RA | 1..1026 | 75..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pex16-RA | 1..1026 | 75..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex16-RA | 1..1026 | 75..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3947-RA | 1..1026 | 75..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex16-RA | 1..1026 | 75..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3947-RA | 13..1415 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pex16-RA | 38..1440 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex16-RA | 37..1439 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3947-RA | 13..1415 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex16-RA | 37..1439 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20778043..20778228 | 1..186 | 100 | Minus | |
3L | 20776766..20777982 | 187..1403 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20778043..20778228 | 1..186 | 100 | Minus | |
3L | 20776766..20777982 | 187..1403 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20778043..20778228 | 1..186 | 100 | Minus | |
3L | 20776766..20777982 | 187..1403 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20771143..20771328 | 1..186 | 100 | Minus | |
arm_3L | 20769866..20771082 | 187..1403 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20769866..20771082 | 187..1403 | 100 | <- | Minus |
3L | 20771143..20771328 | 1..186 | 100 | Minus |
Translation from 2 to 1099
> LD20358.hyp LITCRPKHLIIFIIWRNRQYFPDIMDTLKGMLKAYEAWVGKNPDVVGDFE TTAKWVSYFIAGRISSSNVVSELVYTLSNMLVFYNDRIIEKARNSEENSV IHLQSKLCYRLKVTLTTLEYSEVFIEISARRLFGQSGKWLVIALIQAFKA AGRFFILKHSTSDIITSPPIAALNRRAKQRKNSGDGVASSTNDLLQSQHS ITFQLKRSGRVIRKVEGAPPLQYRDFKLHIDNNEAAKTQIPRKLLQAEYL YISKPLIHLVAMGLFGRRSWKQYMVALSIDLYSIHLYRQHRDLMSKQQKL ELSRRCINIMYFLVRSPFYDSFTKSRLERILDFVATSVPIAKVVAKPLKD YIPTWQSTYFYLWST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex16-PA | 341 | CG3947-PA | 1..341 | 25..365 | 1740 | 100 | Plus |
Translation from 74 to 1099
> LD20358.pep MDTLKGMLKAYEAWVGKNPDVVGDFETTAKWVSYFIAGRISSSNVVSELV YTLSNMLVFYNDRIIEKARNSEENSVIHLQSKLCYRLKVTLTTLEYSEVF IEISARRLFGQSGKWLVIALIQAFKAAGRFFILKHSTSDIITSPPIAALN RRAKQRKNSGDGVASSTNDLLQSQHSITFQLKRSGRVIRKVEGAPPLQYR DFKLHIDNNEAAKTQIPRKLLQAEYLYISKPLIHLVAMGLFGRRSWKQYM VALSIDLYSIHLYRQHRDLMSKQQKLELSRRCINIMYFLVRSPFYDSFTK SRLERILDFVATSVPIAKVVAKPLKDYIPTWQSTYFYLWST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24114-PA | 339 | GF24114-PA | 1..339 | 1..341 | 1578 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13286-PA | 343 | GG13286-PA | 1..343 | 1..341 | 1755 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16755-PA | 339 | GH16755-PA | 1..339 | 1..341 | 1451 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex16-PA | 341 | CG3947-PA | 1..341 | 1..341 | 1740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13416-PA | 339 | GI13416-PA | 1..339 | 1..341 | 1513 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12754-PA | 345 | GL12754-PA | 1..345 | 1..341 | 1509 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17796-PA | 345 | GA17796-PA | 1..345 | 1..341 | 1533 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22189-PA | 343 | GM22189-PA | 1..343 | 1..341 | 1767 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12164-PA | 343 | GD12164-PA | 1..343 | 1..341 | 1768 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11541-PA | 335 | GJ11541-PA | 1..335 | 1..341 | 1481 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12314-PA | 342 | GK12314-PA | 1..342 | 1..341 | 1473 | 78.7 | Plus |