Clone LD20358 Report

Search the DGRC for LD20358

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:203
Well:58
Vector:pBS SK-
Associated Gene/TranscriptPex16-RA
Protein status:LD20358.pep: gold
Preliminary Size:1526
Sequenced Size:1423

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3947 2001-01-01 Release 2 assignment
CG3947 2001-10-10 Blastp of sequenced clone
CG3947 2003-01-01 Sim4 clustering to Release 3
CG3947 2008-04-29 Release 5.5 accounting
CG3947 2008-08-15 Release 5.9 accounting
CG3947 2008-12-18 5.12 accounting

Clone Sequence Records

LD20358.complete Sequence

1423 bp (1423 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061286

> LD20358.complete
ATTTGATTACCTGTAGACCGAAACACCTCATTATTTTTATTATTTGGAGG
AACAGACAATATTTTCCGGATATAATGGACACTCTGAAGGGCATGCTGAA
GGCGTACGAGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTG
AGACCACAGCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCA
TCAAATGTGGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTT
CTACAACGACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGG
TGATCCACCTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACG
ACGCTCGAATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTT
CGGTCAATCCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGG
CAGCGGGCCGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACC
TCACCGCCCATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTC
GGGGGATGGTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACT
CCATTACCTTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAG
GGTGCTCCTCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAA
TGAAGCGGCGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACC
TGTATATATCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGC
CGGAGAAGTTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAG
CATTCACCTCTACCGCCAGCATCGCGACCTAATGTCCAAGCAACAAAAAC
TGGAGCTGAGCAGGCGATGCATAAACATCATGTACTTCCTGGTCCGATCG
CCGTTCTATGACAGCTTCACCAAATCCAGACTGGAGCGGATCCTCGACTT
TGTGGCCACAAGTGTGCCCATTGCTAAGGTGGTTGCCAAACCCCTTAAAG
ATTACATTCCCACGTGGCAAAGCACTTACTTCTATCTGTGGTCCACTTAG
GCATTTCAGGTAGAGCGTTAGTATTCCCCTAGGCTAAGTTTTAAAGTTAC
AGGTGTGGACGCATTCGGAGTGTTGAGGGTGGGTTGAGTTTTGGTCCTTG
AAAAGTTGTTTGCACAATAAAACGATGGAGTAATTTTCGATATGTTTATA
GCCAACTTTCATATTCCTTGAATTGACCCACCCACATGGCATTGCCGCTC
TTGAGGTGAAAAATGATTATACATCCCAATTGCTTTGTATGGCTTTTTAA
ATTATATATGGAACAATATTTATACACATACAATTAAACGAAATTTTCCA
CTTAAAAAAAAAAAAAAAAAAAA

LD20358.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3947-RA 1609 CG3947-RA 123..1526 1..1404 7020 100 Plus
Pitslre.b 3093 Pitslre.b 2921..3093 1404..1232 865 100 Minus
Pitslre-RC 3357 Pitslre-RC 3185..3357 1404..1232 865 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20765786..20767005 1403..184 6100 100 Minus
chr3L 24539361 chr3L 20767061..20767248 188..1 925 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20776765..20777985 1404..184 6105 100 Minus
3L 28110227 3L 20778041..20778228 188..1 940 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20769865..20771085 1404..184 6105 100 Minus
3L 28103327 3L 20771141..20771328 188..1 940 100 Minus
Blast to na_te.dros performed 2019-03-15 21:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 482..551 1317..1390 116 67.6 Plus

LD20358.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:59:27 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20765786..20767002 187..1403 100 <- Minus
chr3L 20767063..20767248 1..186 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:40 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
CG3947-RA 1..1026 75..1100 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:15 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
pex16-RA 1..1026 75..1100 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:03:51 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 1..1026 75..1100 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:03 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
CG3947-RA 1..1026 75..1100 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:52 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 1..1026 75..1100 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:22 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
CG3947-RA 13..1415 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:15 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
pex16-RA 38..1440 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:03:51 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 37..1439 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:03 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
CG3947-RA 13..1415 1..1403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:52 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 37..1439 1..1403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:27 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778043..20778228 1..186 100   Minus
3L 20776766..20777982 187..1403 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:27 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778043..20778228 1..186 100   Minus
3L 20776766..20777982 187..1403 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:27 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778043..20778228 1..186 100   Minus
3L 20776766..20777982 187..1403 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:03:51 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20771143..20771328 1..186 100   Minus
arm_3L 20769866..20771082 187..1403 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:44 Download gff for LD20358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20769866..20771082 187..1403 100 <- Minus
3L 20771143..20771328 1..186 100   Minus

LD20358.hyp Sequence

Translation from 2 to 1099

> LD20358.hyp
LITCRPKHLIIFIIWRNRQYFPDIMDTLKGMLKAYEAWVGKNPDVVGDFE
TTAKWVSYFIAGRISSSNVVSELVYTLSNMLVFYNDRIIEKARNSEENSV
IHLQSKLCYRLKVTLTTLEYSEVFIEISARRLFGQSGKWLVIALIQAFKA
AGRFFILKHSTSDIITSPPIAALNRRAKQRKNSGDGVASSTNDLLQSQHS
ITFQLKRSGRVIRKVEGAPPLQYRDFKLHIDNNEAAKTQIPRKLLQAEYL
YISKPLIHLVAMGLFGRRSWKQYMVALSIDLYSIHLYRQHRDLMSKQQKL
ELSRRCINIMYFLVRSPFYDSFTKSRLERILDFVATSVPIAKVVAKPLKD
YIPTWQSTYFYLWST*

LD20358.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pex16-PA 341 CG3947-PA 1..341 25..365 1740 100 Plus

LD20358.pep Sequence

Translation from 74 to 1099

> LD20358.pep
MDTLKGMLKAYEAWVGKNPDVVGDFETTAKWVSYFIAGRISSSNVVSELV
YTLSNMLVFYNDRIIEKARNSEENSVIHLQSKLCYRLKVTLTTLEYSEVF
IEISARRLFGQSGKWLVIALIQAFKAAGRFFILKHSTSDIITSPPIAALN
RRAKQRKNSGDGVASSTNDLLQSQHSITFQLKRSGRVIRKVEGAPPLQYR
DFKLHIDNNEAAKTQIPRKLLQAEYLYISKPLIHLVAMGLFGRRSWKQYM
VALSIDLYSIHLYRQHRDLMSKQQKLELSRRCINIMYFLVRSPFYDSFTK
SRLERILDFVATSVPIAKVVAKPLKDYIPTWQSTYFYLWST*

LD20358.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24114-PA 339 GF24114-PA 1..339 1..341 1578 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13286-PA 343 GG13286-PA 1..343 1..341 1755 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16755-PA 339 GH16755-PA 1..339 1..341 1451 77.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pex16-PA 341 CG3947-PA 1..341 1..341 1740 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13416-PA 339 GI13416-PA 1..339 1..341 1513 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12754-PA 345 GL12754-PA 1..345 1..341 1509 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17796-PA 345 GA17796-PA 1..345 1..341 1533 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22189-PA 343 GM22189-PA 1..343 1..341 1767 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12164-PA 343 GD12164-PA 1..343 1..341 1768 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11541-PA 335 GJ11541-PA 1..335 1..341 1481 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12314-PA 342 GK12314-PA 1..342 1..341 1473 78.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22384-PA 343 GE22384-PA 1..343 1..341 1746 95.6 Plus
Dyak\GE15060-PA 279 GE15060-PA 1..276 1..274 1253 87.3 Plus