Clone LD20362 Report

Search the DGRC for LD20362

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:203
Well:62
Vector:pBS SK-
Associated Gene/TranscriptCG33229-RA
Protein status:LD20362.pep: gold
Preliminary Size:1560
Sequenced Size:1495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16971 2001-01-01 Release 2 assignment
CG33229 2001-10-10 Blastp of sequenced clone
CG33229 2008-04-29 Release 5.5 accounting
CG33229 2008-08-15 Release 5.9 accounting
CG33229 2008-12-18 5.12 accounting

Clone Sequence Records

LD20362.complete Sequence

1495 bp (1495 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061287

> LD20362.complete
TAGAACAGTCATAAGCAGTCCGCTAAGAGATTAGTAGCAACTACGAAGTG
AAGGTGTGTGTATACCAAATTCTCAATTTTCTCTTCGAGTCGTCGCAAAC
AAAAACCCTGTGAGATCATCGAAATGGTGGCGTACTACGACGAGTGCGAC
GCAGCCGAGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGT
TAAGCGCCAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTAC
GCGTGAACGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTG
CGTAGAAAGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACG
GTTTGTGCCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAG
TGGCGACCTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAAT
TTATGGAGCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAG
CAGCAACAATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCA
ACAGTTACACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCAC
AGCTGCGCCATTGCCGTGGCCAGTTAGTTAGACAGAGACGACCGTATGGT
GCGTACTTTATGTGTATGCGTGGCTGACACACACATCTATATAAACAAAA
TGGCGTCAGGATGGAAGGAACCGTTTAGTTTTCAGCTGCCCGTTCGAATC
AAACCGTATACCATTGTTCAAATACGTAGCTTTAGCCCTATTTGTCTTCT
GTTAAAATAGTTTTATTACGACAACCAATTTCTCATTTGCAGTCGCAAAC
ATGTGCAAGGCTGTTGTAGATTGTAAAGAAAGAATGAAGGATTGGAAGAG
TGTGAGGAGACGCTGAGCAAACGGCCTTCAAATCGAAAGTGGTGTGAGTC
ATGGGCGCTGCCACCATCTATGCGAAAAGCCCACCAAGCATTGGTCACGG
AGCACACTCGGTTTGTAAATAAGTATATTTTTTTTAGTTAAATTACGTAG
CTTAATGAGTGTGGCGAAATAAGACGTCGCTTACAGGCATCCCAAACGTC
ACGAAATCGGTCAGACAAAGAAAAAAAAAACTCGATATACTTACACAATG
CATACACATTAACACATCTACATGTCGCGATGGTGTGTGAGCATGAACGC
TCGTGCTATTTTTGTGTACACCAAGTTGAGCTACTTTTGTTGTCCGATGT
GTCGAGAAATTCGATTTCGAATTAAATTCGAACGTTCGTCATCGCCACTT
CTGCGAGTTACATACGGTTCATATTGAATCACTAGCGCTAGAAAACGGGC
AATATTGCAAAGTAAACGAGTGAAAGTCGAAAACCCAACTATTAACTGTA
AATGTACTTAAAGTAAGCATACAGAACTGATATTTGATAAAACCTAAAAT
AAAACTATTATAATTAATAACTGTTAAAAAAAAAAAAAAAAAAAA

LD20362.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-RA 1483 CG33229-RA 1..1479 1..1479 7395 100 Plus
CG16971-RD 525 CG16971-RD 78..247 841..1010 850 100 Plus
CG16971-RC 667 CG16971-RC 78..247 841..1010 850 100 Plus
CG16971-RD 525 CG16971-RD 27..79 1..53 265 100 Plus
CG16971-RC 667 CG16971-RC 27..79 1..53 265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 224086..225560 1..1475 7360 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 224131..225609 1..1479 7395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 224131..225609 1..1479 7395 100 Plus
Blast to na_te.dros performed 2019-03-16 03:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6837 499..599 213 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6661..6824 441..603 203 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2419 499..610 191 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2512 428..599 181 58.7 Plus
roo 9092 roo DM_ROO 9092bp 1063..1158 491..589 172 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6912 499..599 161 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6919 422..590 158 61.5 Plus
roo 9092 roo DM_ROO 9092bp 1006..1179 412..587 145 57.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6360..6415 1419..1472 139 76.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2550 493..587 136 64.6 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 4298..4421 1340..1464 135 61.7 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2608..2685 505..582 129 62.8 Plus
roo 9092 roo DM_ROO 9092bp 1062..1158 445..541 125 58.8 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 6522..6560 1419..1457 123 79.5 Plus
accord2 7650 accord2 QBERT 7650bp 4407..4493 590..504 119 65.6 Minus

LD20362.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:59:34 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 224086..224583 1..498 100 == Plus
chr3L 224676..225560 591..1475 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:16 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..504 124..627 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:10:39 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..504 124..627 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:04 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..504 124..627 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:21:24 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..504 124..627 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:24 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..1475 1..1475 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:16 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 26..1500 1..1475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:10:39 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 26..1500 1..1475 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:05 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..1475 1..1475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:21:24 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 26..1500 1..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:59:34 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 224131..225605 1..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:59:34 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 224131..225605 1..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:59:34 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 224131..225605 1..1475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:10:39 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 224131..225605 1..1475 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:45 Download gff for LD20362.complete
Subject Subject Range Query Range Percent Splice Strand
3L 224131..225605 1..1475 100   Plus

LD20362.pep Sequence

Translation from 123 to 626

> LD20362.pep
MVAYYDECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILST
ALLHAEHELRRKQQERFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKA
AAEAEAESNLWSSELSSLDSFMRSLSSNNGNQDTCNNNNNGSNSYTGASN
NNNSNNEQHSCAIAVAS*

LD20362.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24747-PA 170 GF24747-PA 1..126 1..126 521 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14704-PA 167 GG14704-PA 1..167 1..167 641 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19230-PA 166 GH19230-PA 1..129 1..121 423 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-PB 167 CG33229-PB 1..167 1..167 870 100 Plus
CG33229-PA 167 CG33229-PA 1..167 1..167 870 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13759-PA 150 GI13759-PA 1..129 1..121 387 63.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16117-PA 161 GL16117-PA 1..161 1..167 557 68.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28387-PA 161 GA28387-PA 1..161 1..167 555 68.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14320-PA 167 GM14320-PA 1..167 1..167 859 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13558-PA 167 GD13558-PA 1..167 1..167 717 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17444-PA 150 GJ17444-PA 1..150 1..167 389 53.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11395-PA 175 GK11395-PA 1..129 1..123 501 74.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21068-PA 167 GE21068-PA 1..167 1..167 641 92.8 Plus

LD20362.hyp Sequence

Translation from 123 to 626

> LD20362.hyp
MVAYYDECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILST
ALLHAEHELRRKQQERFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKA
AAEAEAESNLWSSELSSLDSFMRSLSSNNGNQDTCNNNNNGSNSYTGASN
NNNSNNEQHSCAIAVAS*

LD20362.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-PB 167 CG33229-PB 1..167 1..167 870 100 Plus
CG33229-PA 167 CG33229-PA 1..167 1..167 870 100 Plus