Clone LD20383 Report

Search the DGRC for LD20383

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:203
Well:83
Vector:pBS SK-
Associated Gene/TranscriptCG10013-RA
Protein status:LD20383.pep: gold
Preliminary Size:1745
Sequenced Size:1697

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10013 2001-01-01 Release 2 assignment
CG10013 2003-01-01 Sim4 clustering to Release 3
CG10013 2003-04-25 Blastp of sequenced clone
CG10013 2008-04-29 Release 5.5 accounting
CG10013 2008-08-15 Release 5.9 accounting
CG10013 2008-12-18 5.12 accounting

Clone Sequence Records

LD20383.complete Sequence

1697 bp (1697 high quality bases) assembled on 2003-04-25

GenBank Submission: BT010051

> LD20383.complete
CAACTTCTAGATGACAATCGATTTATAAGTGTAACAAAAAGCGAGCCACT
CACTTGACTAGTTAAACTAACTATTTCAATAACTTTAATCAACTGAAATC
AAAATTAAGTTCAGGACAATGTCGTTAGACCAAGTTATAATCAACTGCAT
GCGCAGCAAGAACTGGATCAATGTCCTGCTCCTTAGATCGATGGATCTTT
TCCAACCCCTACTGGTCGAGAGTTCCAATGTGTCCCAATTGATAGAGGTC
AGCCCCAATGGGATCAGTTGGCACGAGAAGAACGTGGAGTACCGCATCAT
AATGGACGAGTTCTTCGATATAATCACCAGGACGAATGCTGGCGACGTGC
CCATTACCTTAGTCGAAATGAAGGGTAGTCATGTGTCATTTGGATTATAT
CTCCGTAGGATTAGGTACAGCATTTTGGATGCGCTCACCATTAATGTGGA
ACTGGGGGAGCTGCCAATGTGTATTTCCCCATACAATTCCTGTTCCCTGC
ACTGCAGCAACTGTACGAATGAAATCATTGGGCAAAGGCAGTATTATCAT
ATCCAGGAGGTTCCGATAACGACCATCTTGCCGCAGAACTACTTCTGTCC
CCGCAACAGGATCCCAGTGTATCCTTCGGAGGAGGAGCTCTATTACGGCC
TCAACTATCTGGTCGTATGCTCCGAGCTGCTCGGCAACGGAGTCAAGACC
ATCGCAGGTCGTCGTCGCGTACTCTGCTCACGCTGCAAGAAGTGCGTAGG
CGAGTTTATTACCAGGGATGTGGGCGTGCAGCTGTACGCGGATGCCTTGC
GATTTGTGACCTTGGACTCCCCACTCGAGTTCAAGGAGATCTTTGGCCAT
GTGACACCCACCCAAATTATGATGCGCCTGGTGAACGACGGCGAAATCTG
TGGCCCGGATCAGAGACGCCTCTTCCTCAAGGCCGTGCGTCCGGATGGTC
AGTTGCAGTTATTGCACTTGGAGATGGATACCAAGCAGATGCACATTCTG
CGCTCCGAGCTGAAGTTGCCCGACATTAAAAAACCTGATATAGACTTACC
CATGGAGGTCGATACCAGCAGCGAAAGTGATGTGGACATGAATGTGAGCG
ATACGAGCAGCAGCAACTCCATGCCCCAAACAGGAGATGAAGAATTAGCT
CCAACACCCAGATCCACTACCCCCAGAGGAACTCCTACAAAGACCGTGCA
ATATGTGCGGTTGCGTGGCTTTCGTGGCTGGCGCGTTAGGTACCTGTTCT
CGGGAAGTGATCGCGATCTGATCGAACACGACGATGTCTATATAAACTGG
ACCGATGAGGGAACCCGCCTTTTGTACATCTCCCACTTGATGATGGCAGA
CCTCCTAAGCGAGTTCAATGCCAATGAGAACCTTGTGGCCAGTTTGGAGA
AGAAGCCGCTACCCACCAGGACTGATAATCCCCGGCAAAGCTGCATTATC
TGCGAGTCTGATAAAGAGTTCTATGCCAGGTACGAGCGACTTGCCAAGAT
TTCTCAAGAGGGATGAAGTTCAATCCCAGCTGAACCAAGCTATTAAAAAT
AAGATTTGTTTACATTTATCAATATGAGATGTTTTATTTCAAAATATGAT
TTAATTAAACTTGCATTTGTATTTCCTCATCATGTCATACAAAAAATAAA
ACCATAAATATTGAAGCTTTTGTAATGTAAAAAAAAAAAAAAAAAAA

LD20383.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10013-RA 1692 CG10013-RA 11..1692 1..1682 8410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8148929..8150606 1..1678 8390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12323533..12325214 1..1682 8410 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12064364..12066045 1..1682 8410 100 Plus
Blast to na_te.dros performed 2019-03-16 00:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 3458..3549 1655..1564 135 63.4 Minus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5758..5846 1635..1551 129 64 Minus
X-element 4740 X-element ROXELEMENT 4740bp 3054..3111 1490..1548 112 67.8 Plus

LD20383.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:15 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8148929..8150606 1..1678 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:42 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 1..1398 119..1516 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:43 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 1..1398 119..1516 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:38 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 1..1398 119..1516 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:10 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 1..1398 119..1516 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:12:08 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 1..1398 119..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:55:26 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 11..1688 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:42 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 11..1688 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:38 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 13..1690 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:11 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 11..1688 1..1678 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:12:08 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
CG10013-RA 13..1690 1..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:15 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12323533..12325210 1..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:15 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12323533..12325210 1..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:15 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12323533..12325210 1..1678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:38 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8149255..8150932 1..1678 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:06:11 Download gff for LD20383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12064364..12066041 1..1678 100   Plus

LD20383.hyp Sequence

Translation from 118 to 1515

> LD20383.hyp
MSLDQVIINCMRSKNWINVLLLRSMDLFQPLLVESSNVSQLIEVSPNGIS
WHEKNVEYRIIMDEFFDIITRTNAGDVPITLVEMKGSHVSFGLYLRRIRY
SILDALTINVELGELPMCISPYNSCSLHCSNCTNEIIGQRQYYHIQEVPI
TTILPQNYFCPRNRIPVYPSEEELYYGLNYLVVCSELLGNGVKTIAGRRR
VLCSRCKKCVGEFITRDVGVQLYADALRFVTLDSPLEFKEIFGHVTPTQI
MMRLVNDGEICGPDQRRLFLKAVRPDGQLQLLHLEMDTKQMHILRSELKL
PDIKKPDIDLPMEVDTSSESDVDMNVSDTSSSNSMPQTGDEELAPTPRST
TPRGTPTKTVQYVRLRGFRGWRVRYLFSGSDRDLIEHDDVYINWTDEGTR
LLYISHLMMADLLSEFNANENLVASLEKKPLPTRTDNPRQSCIICESDKE
FYARYERLAKISQEG*

LD20383.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10013-PA 465 CG10013-PA 1..465 1..465 2438 100 Plus
CG7326-PB 482 CG7326-PB 89..312 84..295 172 22 Plus
CG7326-PA 482 CG7326-PA 89..312 84..295 172 22 Plus

LD20383.pep Sequence

Translation from 118 to 1515

> LD20383.pep
MSLDQVIINCMRSKNWINVLLLRSMDLFQPLLVESSNVSQLIEVSPNGIS
WHEKNVEYRIIMDEFFDIITRTNAGDVPITLVEMKGSHVSFGLYLRRIRY
SILDALTINVELGELPMCISPYNSCSLHCSNCTNEIIGQRQYYHIQEVPI
TTILPQNYFCPRNRIPVYPSEEELYYGLNYLVVCSELLGNGVKTIAGRRR
VLCSRCKKCVGEFITRDVGVQLYADALRFVTLDSPLEFKEIFGHVTPTQI
MMRLVNDGEICGPDQRRLFLKAVRPDGQLQLLHLEMDTKQMHILRSELKL
PDIKKPDIDLPMEVDTSSESDVDMNVSDTSSSNSMPQTGDEELAPTPRST
TPRGTPTKTVQYVRLRGFRGWRVRYLFSGSDRDLIEHDDVYINWTDEGTR
LLYISHLMMADLLSEFNANENLVASLEKKPLPTRTDNPRQSCIICESDKE
FYARYERLAKISQEG*

LD20383.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19245-PA 491 GF19245-PA 87..271 79..256 186 27.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18739-PA 455 GG18739-PA 1..455 1..462 1644 70.2 Plus
Dere\GG18087-PA 489 GG18087-PA 88..311 84..295 179 22.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17688-PA 483 GH17688-PA 51..307 67..295 213 25.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10013-PA 465 CG10013-PA 1..465 1..465 2438 100 Plus
CG7326-PB 482 CG7326-PB 89..312 84..295 172 22 Plus
CG7326-PA 482 CG7326-PA 89..312 84..295 172 22 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22896-PA 457 GI22896-PA 1..456 1..450 585 33.7 Plus
Dmoj\GI21509-PA 492 GI21509-PA 70..304 79..295 215 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22276-PA 498 GL22276-PA 1..477 1..461 617 34.7 Plus
Dper\GL21317-PA 488 GL21317-PA 78..260 88..256 170 24.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27439-PA 501 GA27439-PA 1..480 1..461 615 33.8 Plus
Dpse\GA20262-PA 488 GA20262-PA 78..260 88..256 170 24.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24012-PA 464 GM24012-PA 1..464 1..464 2128 86.9 Plus
Dsec\GM22779-PA 453 GM22779-PA 89..268 84..256 173 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18813-PA 325 GD18813-PA 1..277 1..277 1365 91.7 Plus
Dsim\GD15612-PA 486 GD15612-PA 89..312 84..295 186 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23308-PA 448 GJ23308-PA 1..427 1..428 635 35.3 Plus
Dvir\GJ19047-PA 516 GJ19047-PA 70..298 79..295 190 29 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11543-PA 449 GK11543-PA 1..448 1..450 663 34.9 Plus
Dwil\GK19715-PA 472 GK19715-PA 68..294 79..295 229 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26171-PA 462 GE26171-PA 1..462 1..463 1781 71.9 Plus
Dyak\GE15484-PA 488 GE15484-PA 91..312 86..295 173 22.2 Plus