BDGP Sequence Production Resources |
Search the DGRC for LD20420
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 204 |
Well: | 20 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG12081-RA |
Protein status: | LD20420.pep: gold |
Preliminary Size: | 1841 |
Sequenced Size: | 1905 |
Gene | Date | Evidence |
---|---|---|
CG12081 | 2002-06-06 | Blastp of sequenced clone |
CG12081 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12081 | 2008-04-29 | Release 5.5 accounting |
CG12081 | 2008-08-15 | Release 5.9 accounting |
CG12081 | 2008-12-18 | 5.12 accounting |
1905 bp (1905 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119599
> LD20420.complete CTGTGTGCTTGTGTTGTTCAAAAATTCGATCCGTTTCGTTTCGTTTCAAC ATCTGGCAAAACTGGCAGAGCGGAGCGCAGCTAGCGCTTGGTATCAGTGT TTATACCTGTGTGGCCTTCAATTGCTCGCACCTGCGCCCGCACCACCCTG CCCCCGCTCCCAAAAGGAGCGACAACTGCGGCGCACTTGCTTTCCTTTGT GTGTTTTGGCTGCTTGGGCTGCTCGGGCAGCTTGGGCCCAAAGCAAAGAT CTCCGTCTCCTCGCACAGCACACTGGTGCTACACGGCTCGCAGCCCACAG CGCACAGCTTATCCAGTTGGCCAAGACATGCTGTGGACGGTGCATCTGGA CGGTGGGCCACAGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCA TCTACAGCTTTGGTGGCTACTGCACCGGATACGATTATCGCTACAATGAG CCCATCGATGTGCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGT GCCCCAGCAGCTGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGC CCTTCCAGCGCTACGGACACACGGTGGTGGCCTACAAGGATCGCATCTAC ATTTGGGGCGGTCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTT CGATCCCAAGACAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTAC CCGGAGCGCGGGATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTAC ATCTTCGGTGGATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCA TTCCCTTAATCTGGACACCATGGAGTGGCGCTATGTTCAGACATTTGGCG TGCCGCCCAGCTACAGAGATTTTCATGCGTCGGTGGCCTACGAACAGGAG CGAATGTACATCTTCGGCGGGCGGGGCGATAAGCACAGTCCGTACCACAG CCAGGAGGAGACCTACTGTCACGAGATCGTCTACCTGGACATGAAGACCA AGGTGTGGCATCGACCGTTCACGGCCGGTAAGGTGCCCGTTGGTCGACGC AGCCACAGCATGTTCGTTTACAACAAGCTGATATATGTCTTCGGTGGCTA TAATGGCCTGTTGGATCAGCATTTCAACGATCTGTACACCTTCGATCCGC GCACCAAGCTGTGGAACCTGATACGGGCCAACGGCAAGGCACCGACGGCG CGTCGGAGACAGTGCGCCATTGTGATGGGCACTAGGATGTTCCTGTTTGG CGGCACCAGTCCAAGGAGCGGCTCCTCCAGCTCGCCGGCAGCTGTTTCAC CCACTCAAGAGACGGGCGGAGCCGCAGCGGCTGGCGGAGTTGTTCCGCCC GGTGTGGCGCTTATCGACTACAGCGATCTGCATGTGCTCGACTTTGAGCC CACTCTAAAAACCCTGGCCACCATGGTGGTGCTCAAGCACCAGCTGGACA TCTCGGGGCTGCCAAGGAGCTTCCGCTCGGACCTGCAGATGCTGACACAG CCGAACAGTATTAGCCGGCCCATCAACCAAGCTGGCTAGCGTCCAAAGCC GTAAGGAATAAGCCGGAGTCGACTGCCACAAAATGGAATGAGGTGGAGAA ATGGTGTTGAATCACGGAGCCACTAGTCCGGTTCTTTGTATTGGAGCTCG AATAACACTTTCGGGAGAGATGACGAATGGAGGACCTGAGCGAACGAGGG AGAAGCCCCAGTAATTACAAAAGTTTTAGAAACTTGCTTTTGGTACTTCT GATAGCTGCTAAATAATACACAATAATTATGACCATGCGAATGTAGAATA TAGTTCATGAAACATTTATAAATCGTCCTCAAATAATACACAATAATAAT GACTATGCGAGTATAGAATATAGTTGATGAAACATTTAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12081-RA | 1887 | CG12081-RA | 1..1887 | 1..1887 | 9420 | 99.9 | Plus |
CG12659-RB | 1317 | CG12659-RB | 1218..1317 | 1892..1793 | 485 | 99 | Minus |
CG12659-RB | 1317 | CG12659-RB | 1211..1279 | 1829..1761 | 270 | 92.7 | Minus |
CG12081-RA | 1887 | CG12081-RA | 1761..1822 | 1831..1892 | 220 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8480581..8482467 | 1..1887 | 9390 | 99.8 | Plus |
chrX | 22417052 | chrX | 8482411..8482479 | 1761..1829 | 270 | 92.8 | Plus |
chrX | 22417052 | chrX | 8482341..8482397 | 1831..1887 | 210 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rt1c | 5443 | Rt1c RT1C 5443bp | 2933..3002 | 240..172 | 113 | 66.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8480581..8482467 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1212 | 328..1539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1212 | 328..1539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1212 | 328..1539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1212 | 328..1539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1212 | 328..1539 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1887 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1887 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 14..1900 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 1..1887 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12081-RA | 14..1900 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8588824..8590710 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8588824..8590710 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8588824..8590710 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8482857..8484743 | 1..1887 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8596922..8598808 | 1..1887 | 99 | Plus |
Translation from 327 to 1538
> LD20420.pep MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN QAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22299-PA | 413 | GF22299-PA | 1..413 | 1..403 | 1932 | 88.4 | Plus |
Dana\GF22052-PA | 971 | GF22052-PA | 243..537 | 73..314 | 255 | 27.8 | Plus |
Dana\GF19570-PA | 1483 | GF19570-PA | 68..314 | 75..312 | 245 | 26.9 | Plus |
Dana\GF19570-PA | 1483 | GF19570-PA | 175..414 | 13..242 | 201 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18263-PA | 403 | GG18263-PA | 1..403 | 1..403 | 2149 | 98.3 | Plus |
Dere\GG16387-PA | 1500 | GG16387-PA | 34..317 | 34..312 | 248 | 26.4 | Plus |
Dere\GG12733-PA | 975 | GG12733-PA | 247..541 | 73..314 | 237 | 26.9 | Plus |
Dere\GG16387-PA | 1500 | GG16387-PA | 178..417 | 13..242 | 201 | 27.4 | Plus |
Dere\GG12733-PA | 975 | GG12733-PA | 302..536 | 13..257 | 154 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24899-PA | 399 | GH24899-PA | 1..399 | 1..403 | 1844 | 86.4 | Plus |
Dgri\GH12418-PA | 985 | GH12418-PA | 256..551 | 73..314 | 268 | 28.1 | Plus |
Dgri\GH23616-PA | 1572 | GH23616-PA | 66..312 | 75..312 | 247 | 28.1 | Plus |
Dgri\GH23616-PA | 1572 | GH23616-PA | 173..414 | 13..242 | 207 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12081-PB | 403 | CG12081-PB | 1..403 | 1..403 | 2198 | 100 | Plus |
CG12081-PA | 403 | CG12081-PA | 1..403 | 1..403 | 2198 | 100 | Plus |
CG3711-PE | 975 | CG3711-PE | 251..541 | 77..314 | 254 | 27.5 | Plus |
CG3711-PD | 998 | CG3711-PD | 251..541 | 77..314 | 254 | 27.5 | Plus |
Hcf-PF | 1448 | CG1710-PF | 71..317 | 75..312 | 243 | 25.7 | Plus |
Hcf-PE | 1484 | CG1710-PE | 71..317 | 75..312 | 243 | 25.7 | Plus |
Hcf-PG | 1500 | CG1710-PG | 71..317 | 75..312 | 243 | 25.7 | Plus |
Hcf-PA | 1500 | CG1710-PA | 71..317 | 75..312 | 243 | 25.7 | Plus |
Hcf-PB | 1500 | CG1710-PB | 71..317 | 75..312 | 243 | 25.7 | Plus |
Hcf-PE | 1484 | CG1710-PE | 178..419 | 13..242 | 205 | 27.8 | Plus |
Hcf-PG | 1500 | CG1710-PG | 178..417 | 13..242 | 194 | 27.8 | Plus |
Hcf-PA | 1500 | CG1710-PA | 178..417 | 13..242 | 194 | 27.8 | Plus |
Hcf-PB | 1500 | CG1710-PB | 178..417 | 13..242 | 194 | 27.8 | Plus |
Hcf-PF | 1448 | CG1710-PF | 178..391 | 13..209 | 180 | 27.9 | Plus |
CG3711-PE | 975 | CG3711-PE | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PD | 998 | CG3711-PD | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PE | 975 | CG3711-PE | 464..539 | 75..148 | 161 | 42.1 | Plus |
CG3711-PD | 998 | CG3711-PD | 464..539 | 75..148 | 161 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15073-PA | 200 | GI15073-PA | 1..198 | 1..213 | 950 | 81.7 | Plus |
Dmoj\GI15074-PA | 205 | GI15074-PA | 1..205 | 222..403 | 753 | 74.1 | Plus |
Dmoj\GI15003-PA | 968 | GI15003-PA | 196..534 | 29..314 | 256 | 26.5 | Plus |
Dmoj\GI14089-PA | 1536 | GI14089-PA | 77..323 | 75..312 | 241 | 26.5 | Plus |
Dmoj\GI14089-PA | 1536 | GI14089-PA | 184..425 | 13..242 | 209 | 27 | Plus |
Dmoj\GI15073-PA | 200 | GI15073-PA | 13..186 | 128..298 | 206 | 30.8 | Plus |
Dmoj\GI15003-PA | 968 | GI15003-PA | 294..529 | 13..257 | 157 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22550-PA | 411 | GL22550-PA | 1..411 | 1..403 | 1940 | 87.4 | Plus |
Dper\GL18169-PA | 1461 | GL18169-PA | 71..317 | 75..312 | 236 | 26.5 | Plus |
Dper\GL18169-PA | 1461 | GL18169-PA | 178..419 | 13..242 | 212 | 27.8 | Plus |
Dper\GL14422-PA | 861 | GL14422-PA | 382..457 | 75..148 | 165 | 43.4 | Plus |
Dper\GL14422-PA | 861 | GL14422-PA | 283..459 | 135..314 | 159 | 28.5 | Plus |
Dper\GL13775-PA | 1381 | GL13775-PA | 398..680 | 4..274 | 153 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11382-PA | 411 | GA11382-PA | 1..411 | 1..403 | 1940 | 87.4 | Plus |
Dpse\GA17633-PA | 982 | GA17633-PA | 253..548 | 73..314 | 261 | 28 | Plus |
Dpse\GA14323-PA | 1523 | GA14323-PA | 71..314 | 75..309 | 236 | 26.4 | Plus |
Dpse\GA14323-PA | 1523 | GA14323-PA | 178..419 | 13..242 | 212 | 27.8 | Plus |
Dpse\GA19019-PA | 1381 | GA19019-PA | 398..680 | 4..274 | 153 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21713-PA | 403 | GM21713-PA | 1..403 | 1..403 | 2151 | 98.5 | Plus |
Dsec\GM16906-PA | 190 | GM16906-PA | 1..173 | 193..371 | 459 | 62.4 | Plus |
Dsec\GM16906-PA | 190 | GM16906-PA | 1..116 | 140..256 | 276 | 47.2 | Plus |
Dsec\GM19013-PA | 974 | GM19013-PA | 246..540 | 73..314 | 250 | 27.8 | Plus |
Dsec\GM26794-PA | 822 | GM26794-PA | 71..317 | 75..312 | 246 | 26.1 | Plus |
Dsec\GM26794-PA | 822 | GM26794-PA | 178..417 | 13..242 | 204 | 27.8 | Plus |
Dsec\GM19013-PA | 974 | GM19013-PA | 301..535 | 13..257 | 156 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17746-PA | 414 | GD17746-PA | 179..413 | 160..402 | 566 | 61.6 | Plus |
Dsim\GD17746-PA | 414 | GD17746-PA | 186..324 | 116..255 | 397 | 55.5 | Plus |
Dsim\GD16450-PA | 974 | GD16450-PA | 246..540 | 73..314 | 250 | 27.8 | Plus |
Dsim\GD24404-PA | 487 | GD24404-PA | 74..313 | 13..242 | 196 | 27.4 | Plus |
Dsim\GD24404-PA | 487 | GD24404-PA | 3..213 | 112..312 | 194 | 25.9 | Plus |
Dsim\GD16450-PA | 974 | GD16450-PA | 301..535 | 13..257 | 156 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18879-PA | 401 | GJ18879-PA | 1..401 | 1..403 | 1878 | 86.1 | Plus |
Dvir\GJ15361-PA | 966 | GJ15361-PA | 237..532 | 73..314 | 264 | 28.1 | Plus |
Dvir\GJ16393-PA | 1587 | GJ16393-PA | 78..321 | 75..309 | 231 | 26 | Plus |
Dvir\GJ16393-PA | 1587 | GJ16393-PA | 185..426 | 13..242 | 206 | 26.6 | Plus |
Dvir\GJ20987-PA | 682 | GJ20987-PA | 118..321 | 13..227 | 158 | 27.3 | Plus |
Dvir\GJ16393-PA | 1587 | GJ16393-PA | 139..390 | 22..260 | 152 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20037-PA | 409 | GK20037-PA | 1..409 | 1..403 | 1869 | 83.8 | Plus |
Dwil\GK10175-PA | 937 | GK10175-PA | 207..502 | 73..314 | 267 | 28 | Plus |
Dwil\GK13582-PA | 1497 | GK13582-PA | 66..312 | 75..312 | 238 | 26.5 | Plus |
Dwil\GK13582-PA | 1497 | GK13582-PA | 173..463 | 13..290 | 207 | 25 | Plus |
Dwil\GK11328-PA | 1384 | GK11328-PA | 393..673 | 4..274 | 171 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15794-PA | 403 | GE15794-PA | 1..403 | 1..403 | 2146 | 98 | Plus |
Dyak\GE16559-PA | 984 | GE16559-PA | 255..550 | 73..314 | 252 | 28 | Plus |
Dyak\GE14548-PA | 1503 | GE14548-PA | 71..317 | 75..312 | 248 | 26.5 | Plus |
Dyak\GE14548-PA | 1503 | GE14548-PA | 178..417 | 13..242 | 198 | 27.8 | Plus |
Dyak\GE16559-PA | 984 | GE16559-PA | 310..545 | 13..257 | 155 | 25.2 | Plus |
Translation from 327 to 1538
> LD20420.hyp MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN QAG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12081-PB | 403 | CG12081-PB | 1..403 | 1..403 | 2198 | 100 | Plus |
CG12081-PA | 403 | CG12081-PA | 1..403 | 1..403 | 2198 | 100 | Plus |
CG3711-PE | 975 | CG3711-PE | 251..541 | 77..314 | 254 | 27.5 | Plus |
CG3711-PD | 998 | CG3711-PD | 251..541 | 77..314 | 254 | 27.5 | Plus |
Hcf-PF | 1448 | CG1710-PF | 71..317 | 75..312 | 243 | 25.7 | Plus |
CG3711-PE | 975 | CG3711-PE | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PD | 998 | CG3711-PD | 302..536 | 13..257 | 164 | 25.3 | Plus |
CG3711-PE | 975 | CG3711-PE | 464..539 | 75..148 | 161 | 42.1 | Plus |
CG3711-PD | 998 | CG3711-PD | 464..539 | 75..148 | 161 | 42.1 | Plus |