Clone LD20420 Report

Search the DGRC for LD20420

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:204
Well:20
Vector:pBS SK-
Associated Gene/TranscriptCG12081-RA
Protein status:LD20420.pep: gold
Preliminary Size:1841
Sequenced Size:1905

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12081 2002-06-06 Blastp of sequenced clone
CG12081 2003-01-01 Sim4 clustering to Release 3
CG12081 2008-04-29 Release 5.5 accounting
CG12081 2008-08-15 Release 5.9 accounting
CG12081 2008-12-18 5.12 accounting

Clone Sequence Records

LD20420.complete Sequence

1905 bp (1905 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119599

> LD20420.complete
CTGTGTGCTTGTGTTGTTCAAAAATTCGATCCGTTTCGTTTCGTTTCAAC
ATCTGGCAAAACTGGCAGAGCGGAGCGCAGCTAGCGCTTGGTATCAGTGT
TTATACCTGTGTGGCCTTCAATTGCTCGCACCTGCGCCCGCACCACCCTG
CCCCCGCTCCCAAAAGGAGCGACAACTGCGGCGCACTTGCTTTCCTTTGT
GTGTTTTGGCTGCTTGGGCTGCTCGGGCAGCTTGGGCCCAAAGCAAAGAT
CTCCGTCTCCTCGCACAGCACACTGGTGCTACACGGCTCGCAGCCCACAG
CGCACAGCTTATCCAGTTGGCCAAGACATGCTGTGGACGGTGCATCTGGA
CGGTGGGCCACAGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCA
TCTACAGCTTTGGTGGCTACTGCACCGGATACGATTATCGCTACAATGAG
CCCATCGATGTGCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGT
GCCCCAGCAGCTGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGC
CCTTCCAGCGCTACGGACACACGGTGGTGGCCTACAAGGATCGCATCTAC
ATTTGGGGCGGTCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTT
CGATCCCAAGACAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTAC
CCGGAGCGCGGGATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTAC
ATCTTCGGTGGATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCA
TTCCCTTAATCTGGACACCATGGAGTGGCGCTATGTTCAGACATTTGGCG
TGCCGCCCAGCTACAGAGATTTTCATGCGTCGGTGGCCTACGAACAGGAG
CGAATGTACATCTTCGGCGGGCGGGGCGATAAGCACAGTCCGTACCACAG
CCAGGAGGAGACCTACTGTCACGAGATCGTCTACCTGGACATGAAGACCA
AGGTGTGGCATCGACCGTTCACGGCCGGTAAGGTGCCCGTTGGTCGACGC
AGCCACAGCATGTTCGTTTACAACAAGCTGATATATGTCTTCGGTGGCTA
TAATGGCCTGTTGGATCAGCATTTCAACGATCTGTACACCTTCGATCCGC
GCACCAAGCTGTGGAACCTGATACGGGCCAACGGCAAGGCACCGACGGCG
CGTCGGAGACAGTGCGCCATTGTGATGGGCACTAGGATGTTCCTGTTTGG
CGGCACCAGTCCAAGGAGCGGCTCCTCCAGCTCGCCGGCAGCTGTTTCAC
CCACTCAAGAGACGGGCGGAGCCGCAGCGGCTGGCGGAGTTGTTCCGCCC
GGTGTGGCGCTTATCGACTACAGCGATCTGCATGTGCTCGACTTTGAGCC
CACTCTAAAAACCCTGGCCACCATGGTGGTGCTCAAGCACCAGCTGGACA
TCTCGGGGCTGCCAAGGAGCTTCCGCTCGGACCTGCAGATGCTGACACAG
CCGAACAGTATTAGCCGGCCCATCAACCAAGCTGGCTAGCGTCCAAAGCC
GTAAGGAATAAGCCGGAGTCGACTGCCACAAAATGGAATGAGGTGGAGAA
ATGGTGTTGAATCACGGAGCCACTAGTCCGGTTCTTTGTATTGGAGCTCG
AATAACACTTTCGGGAGAGATGACGAATGGAGGACCTGAGCGAACGAGGG
AGAAGCCCCAGTAATTACAAAAGTTTTAGAAACTTGCTTTTGGTACTTCT
GATAGCTGCTAAATAATACACAATAATTATGACCATGCGAATGTAGAATA
TAGTTCATGAAACATTTATAAATCGTCCTCAAATAATACACAATAATAAT
GACTATGCGAGTATAGAATATAGTTGATGAAACATTTAAAAAAAAAAAAA
AAAAA

LD20420.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-RA 1887 CG12081-RA 1..1887 1..1887 9420 99.9 Plus
CG12659-RB 1317 CG12659-RB 1218..1317 1892..1793 485 99 Minus
CG12659-RB 1317 CG12659-RB 1211..1279 1829..1761 270 92.7 Minus
CG12081-RA 1887 CG12081-RA 1761..1822 1831..1892 220 90.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8480581..8482467 1..1887 9390 99.8 Plus
chrX 22417052 chrX 8482411..8482479 1761..1829 270 92.8 Plus
chrX 22417052 chrX 8482341..8482397 1831..1887 210 91.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8588824..8590715 1..1892 9430 99.9 Plus
X 23542271 X 8590654..8590722 1761..1829 270 92.8 Plus
X 23542271 X 8590584..8590645 1831..1892 220 90.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8596922..8598813 1..1892 9430 99.8 Plus
X 23527363 X 8598752..8598820 1761..1829 270 92.7 Plus
Blast to na_te.dros performed 2019-03-16 15:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 2933..3002 240..172 113 66.2 Minus

LD20420.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:32:24 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8480581..8482467 1..1887 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:43 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1212 328..1539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:38 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1212 328..1539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:13:17 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1212 328..1539 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:46 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1212 328..1539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:44:06 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1212 328..1539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:25 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1887 1..1887 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:38 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1887 1..1887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:17 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 14..1900 1..1887 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:46 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 1..1887 1..1887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:44:06 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
CG12081-RA 14..1900 1..1887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:24 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
X 8588824..8590710 1..1887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:24 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
X 8588824..8590710 1..1887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:24 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
X 8588824..8590710 1..1887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:17 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8482857..8484743 1..1887 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:31 Download gff for LD20420.complete
Subject Subject Range Query Range Percent Splice Strand
X 8596922..8598808 1..1887 99   Plus

LD20420.pep Sequence

Translation from 327 to 1538

> LD20420.pep
MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA
HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN
LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI
NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG
DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK
LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM
GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD
LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN
QAG*

LD20420.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22299-PA 413 GF22299-PA 1..413 1..403 1932 88.4 Plus
Dana\GF22052-PA 971 GF22052-PA 243..537 73..314 255 27.8 Plus
Dana\GF19570-PA 1483 GF19570-PA 68..314 75..312 245 26.9 Plus
Dana\GF19570-PA 1483 GF19570-PA 175..414 13..242 201 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18263-PA 403 GG18263-PA 1..403 1..403 2149 98.3 Plus
Dere\GG16387-PA 1500 GG16387-PA 34..317 34..312 248 26.4 Plus
Dere\GG12733-PA 975 GG12733-PA 247..541 73..314 237 26.9 Plus
Dere\GG16387-PA 1500 GG16387-PA 178..417 13..242 201 27.4 Plus
Dere\GG12733-PA 975 GG12733-PA 302..536 13..257 154 25.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24899-PA 399 GH24899-PA 1..399 1..403 1844 86.4 Plus
Dgri\GH12418-PA 985 GH12418-PA 256..551 73..314 268 28.1 Plus
Dgri\GH23616-PA 1572 GH23616-PA 66..312 75..312 247 28.1 Plus
Dgri\GH23616-PA 1572 GH23616-PA 173..414 13..242 207 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-PB 403 CG12081-PB 1..403 1..403 2198 100 Plus
CG12081-PA 403 CG12081-PA 1..403 1..403 2198 100 Plus
CG3711-PE 975 CG3711-PE 251..541 77..314 254 27.5 Plus
CG3711-PD 998 CG3711-PD 251..541 77..314 254 27.5 Plus
Hcf-PF 1448 CG1710-PF 71..317 75..312 243 25.7 Plus
Hcf-PE 1484 CG1710-PE 71..317 75..312 243 25.7 Plus
Hcf-PG 1500 CG1710-PG 71..317 75..312 243 25.7 Plus
Hcf-PA 1500 CG1710-PA 71..317 75..312 243 25.7 Plus
Hcf-PB 1500 CG1710-PB 71..317 75..312 243 25.7 Plus
Hcf-PE 1484 CG1710-PE 178..419 13..242 205 27.8 Plus
Hcf-PG 1500 CG1710-PG 178..417 13..242 194 27.8 Plus
Hcf-PA 1500 CG1710-PA 178..417 13..242 194 27.8 Plus
Hcf-PB 1500 CG1710-PB 178..417 13..242 194 27.8 Plus
Hcf-PF 1448 CG1710-PF 178..391 13..209 180 27.9 Plus
CG3711-PE 975 CG3711-PE 302..536 13..257 164 25.3 Plus
CG3711-PD 998 CG3711-PD 302..536 13..257 164 25.3 Plus
CG3711-PE 975 CG3711-PE 464..539 75..148 161 42.1 Plus
CG3711-PD 998 CG3711-PD 464..539 75..148 161 42.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15073-PA 200 GI15073-PA 1..198 1..213 950 81.7 Plus
Dmoj\GI15074-PA 205 GI15074-PA 1..205 222..403 753 74.1 Plus
Dmoj\GI15003-PA 968 GI15003-PA 196..534 29..314 256 26.5 Plus
Dmoj\GI14089-PA 1536 GI14089-PA 77..323 75..312 241 26.5 Plus
Dmoj\GI14089-PA 1536 GI14089-PA 184..425 13..242 209 27 Plus
Dmoj\GI15073-PA 200 GI15073-PA 13..186 128..298 206 30.8 Plus
Dmoj\GI15003-PA 968 GI15003-PA 294..529 13..257 157 23.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22550-PA 411 GL22550-PA 1..411 1..403 1940 87.4 Plus
Dper\GL18169-PA 1461 GL18169-PA 71..317 75..312 236 26.5 Plus
Dper\GL18169-PA 1461 GL18169-PA 178..419 13..242 212 27.8 Plus
Dper\GL14422-PA 861 GL14422-PA 382..457 75..148 165 43.4 Plus
Dper\GL14422-PA 861 GL14422-PA 283..459 135..314 159 28.5 Plus
Dper\GL13775-PA 1381 GL13775-PA 398..680 4..274 153 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11382-PA 411 GA11382-PA 1..411 1..403 1940 87.4 Plus
Dpse\GA17633-PA 982 GA17633-PA 253..548 73..314 261 28 Plus
Dpse\GA14323-PA 1523 GA14323-PA 71..314 75..309 236 26.4 Plus
Dpse\GA14323-PA 1523 GA14323-PA 178..419 13..242 212 27.8 Plus
Dpse\GA19019-PA 1381 GA19019-PA 398..680 4..274 153 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21713-PA 403 GM21713-PA 1..403 1..403 2151 98.5 Plus
Dsec\GM16906-PA 190 GM16906-PA 1..173 193..371 459 62.4 Plus
Dsec\GM16906-PA 190 GM16906-PA 1..116 140..256 276 47.2 Plus
Dsec\GM19013-PA 974 GM19013-PA 246..540 73..314 250 27.8 Plus
Dsec\GM26794-PA 822 GM26794-PA 71..317 75..312 246 26.1 Plus
Dsec\GM26794-PA 822 GM26794-PA 178..417 13..242 204 27.8 Plus
Dsec\GM19013-PA 974 GM19013-PA 301..535 13..257 156 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17746-PA 414 GD17746-PA 179..413 160..402 566 61.6 Plus
Dsim\GD17746-PA 414 GD17746-PA 186..324 116..255 397 55.5 Plus
Dsim\GD16450-PA 974 GD16450-PA 246..540 73..314 250 27.8 Plus
Dsim\GD24404-PA 487 GD24404-PA 74..313 13..242 196 27.4 Plus
Dsim\GD24404-PA 487 GD24404-PA 3..213 112..312 194 25.9 Plus
Dsim\GD16450-PA 974 GD16450-PA 301..535 13..257 156 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18879-PA 401 GJ18879-PA 1..401 1..403 1878 86.1 Plus
Dvir\GJ15361-PA 966 GJ15361-PA 237..532 73..314 264 28.1 Plus
Dvir\GJ16393-PA 1587 GJ16393-PA 78..321 75..309 231 26 Plus
Dvir\GJ16393-PA 1587 GJ16393-PA 185..426 13..242 206 26.6 Plus
Dvir\GJ20987-PA 682 GJ20987-PA 118..321 13..227 158 27.3 Plus
Dvir\GJ16393-PA 1587 GJ16393-PA 139..390 22..260 152 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20037-PA 409 GK20037-PA 1..409 1..403 1869 83.8 Plus
Dwil\GK10175-PA 937 GK10175-PA 207..502 73..314 267 28 Plus
Dwil\GK13582-PA 1497 GK13582-PA 66..312 75..312 238 26.5 Plus
Dwil\GK13582-PA 1497 GK13582-PA 173..463 13..290 207 25 Plus
Dwil\GK11328-PA 1384 GK11328-PA 393..673 4..274 171 24.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15794-PA 403 GE15794-PA 1..403 1..403 2146 98 Plus
Dyak\GE16559-PA 984 GE16559-PA 255..550 73..314 252 28 Plus
Dyak\GE14548-PA 1503 GE14548-PA 71..317 75..312 248 26.5 Plus
Dyak\GE14548-PA 1503 GE14548-PA 178..417 13..242 198 27.8 Plus
Dyak\GE16559-PA 984 GE16559-PA 310..545 13..257 155 25.2 Plus

LD20420.hyp Sequence

Translation from 327 to 1538

> LD20420.hyp
MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA
HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN
LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI
NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG
DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK
LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM
GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD
LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN
QAG*

LD20420.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12081-PB 403 CG12081-PB 1..403 1..403 2198 100 Plus
CG12081-PA 403 CG12081-PA 1..403 1..403 2198 100 Plus
CG3711-PE 975 CG3711-PE 251..541 77..314 254 27.5 Plus
CG3711-PD 998 CG3711-PD 251..541 77..314 254 27.5 Plus
Hcf-PF 1448 CG1710-PF 71..317 75..312 243 25.7 Plus
CG3711-PE 975 CG3711-PE 302..536 13..257 164 25.3 Plus
CG3711-PD 998 CG3711-PD 302..536 13..257 164 25.3 Plus
CG3711-PE 975 CG3711-PE 464..539 75..148 161 42.1 Plus
CG3711-PD 998 CG3711-PD 464..539 75..148 161 42.1 Plus