Clone LD20423 Report

Search the DGRC for LD20423

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:204
Well:23
Vector:pBS SK-
Associated Gene/TranscriptCG9641-RA
Protein status:LD20423.pep: gold
Preliminary Size:1867
Sequenced Size:1935

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9641 2001-01-01 Release 2 assignment
CG9641 2001-10-10 Blastp of sequenced clone
CG9641 2003-01-01 Sim4 clustering to Release 3
CG9641 2008-04-29 Release 5.5 accounting
CG9641 2008-08-15 Release 5.9 accounting
CG9641 2008-12-18 5.12 accounting

Clone Sequence Records

LD20423.complete Sequence

1935 bp (1935 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061288

> LD20423.complete
CGACAAGTGCAGTTAACATTTTGTGTGAGTATTAGAACTAACTAGAATAA
TTAGAAAATGGAGGCCACCTACCGCCAGGAACGGGAATGGCTCAATGCCC
GCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCTTATCGCGGC
TATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCCAAATCAGAC
CCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGTTCCCCTCCA
TGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCCAACTCTAAC
TGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCGCGACCCCTC
GTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGCCCGGCAACG
GCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCATCCATGCAG
GTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAAGGAGCTATC
GCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATCTGGACACGG
GCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGACGCACCAGT
CCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGACCGCGGACG
CAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCAAGCGTGCGA
ATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTAAAGAAGCAG
AGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTATTACCATGGC
AATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATCAGCAATTGC
ATGAGATCGAAGCCGGCCTTGTGGAGGAGTTGAAAAAGGGTTGGAAGTCC
AGCATCAATTTTGGGGGCATTCAATTTCTTACTGGAATGATCCAAGTTGT
CTGCATGGACAAGAACTCCCGCCAATGGCTGGAGCATGCGATTTCCAAGA
TCACGGCGTTACCGGAAACTAAACTAATTTGTTGTCCGGAGGATGATATT
CCGGCCACAAAGGGAATCACAGTCAGAGTACCACGTTCAGCTGATGAGCC
CGATAAGGTCACGTTTCAACTTTTAAAAGACCAGAATAGCGACCTTCTGT
CGAAGACTTGGGAATTTGGCCGTATAAGCCAGACCAAGGATGGCAAGGTG
GTAGTAATAAGCTGTGGCAGTAAGTCTTACAACCTGGTGCAGAAGAAGGG
CTTTTGCCTTAGCTACCGTTTTAACCAGCTCAATTGCCGCGAGATAAGTG
GCAAGGAGGCCCTCAAGGCGGTTCGCAGCTCAGAGGCTAGGTCCACCGCC
GAGTTATCTGAAATTGACCTAACCGAAGAGGACGGCGAAGAGTTCATTTC
TCATCTTGATCTGACCGTTGTGGACGAAGTGAAGGGAGATGATGATGATG
AAAATGAGAATGAGATGACTGAAGATCATGATGAGGTGGAAGAGGCAGCT
GAAGAGCAACACGATGATGTGGAGTTCATTGAAGAGGAGCCGGGCGAGAA
GAGCAATGATGTAGAGGTCACTCCTGAAGCGGAGGGCGAGGAGTGCGAAG
AGCCTCATCAGGAGGAAGAGAATTGCAACGCTGAGGTGGTTAATGAAGAC
ACATGCTCCTTGTAAGCAAGCCGATGGGTAACGGGATTCATGGAACATTT
TAAACTGAATAACACACCCTAAACATATTTGACATACGAAATGACATGAC
AACGGAACAAGGACAGCAGTATCGTGCAGCTTCACAAGTGAATTCTCACT
GCAATATCAGTTCATACTGCCTCAAGTCGACATTAACCATAAGGATTTCA
TATTATAAAATACACCAAAGAAATATGTAATATACTTCTCAATAAACACT
CACTACCACATTTAAAAAAAAAAAAAAAAAAAAAA

LD20423.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9641-RA 1996 CG9641-RA 79..1996 1..1918 9590 100 Plus
CG9641.a 2149 CG9641.a 232..2149 1..1918 9590 100 Plus
CG9641-RB 1774 CG9641-RB 145..1774 289..1918 8150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2974786..2976478 1693..1 8450 99.9 Minus
chr2L 23010047 chr2L 2974510..2974716 1913..1692 805 91.9 Minus
chr2RHet 3288813 chr2RHet 1951837..1951911 1836..1761 255 92.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2975150..2976842 1693..1 8465 100 Minus
2L 23513712 2L 2974854..2975080 1918..1692 1135 100 Minus
2R 25286936 2R 3168698..3168772 1836..1761 240 90.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2975150..2976842 1693..1 8465 100 Minus
2L 23513712 2L 2974854..2975080 1918..1692 1135 100 Minus
2R 25260384 2R 3168698..3168772 1836..1761 250 90.7 Minus
2R 25260384 2R 3168783..3168819 1728..1692 170 97.2 Minus
Blast to na_te.dros performed on 2019-03-16 09:19:30 has no hits.

LD20423.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:20:10 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2974584..2974715 1693..1824 97 <- Minus
chr2L 2974510..2974583 1840..1913 100 == Minus
chr2L 2974787..2976478 1..1692 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:45 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 1..1608 58..1665 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:18 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 1..1608 58..1665 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:53 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 1..1608 58..1665 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:06 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 1..1608 58..1665 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:06 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 1..1608 58..1665 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:25 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 18..1930 1..1913 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:18 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 18..1930 1..1913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:53 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 21..1933 1..1913 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:06 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 18..1930 1..1913 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:06 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
CG9641-RA 21..1933 1..1913 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2974859..2975079 1693..1913 100 <- Minus
2L 2975151..2976842 1..1692 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2974859..2975079 1693..1913 100 <- Minus
2L 2975151..2976842 1..1692 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2974859..2975079 1693..1913 100 <- Minus
2L 2975151..2976842 1..1692 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:53 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2974859..2975079 1693..1913 100 <- Minus
arm_2L 2975151..2976842 1..1692 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:47 Download gff for LD20423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2974859..2975079 1693..1913 100 <- Minus
2L 2975151..2976842 1..1692 100   Minus

LD20423.pep Sequence

Translation from 57 to 1664

> LD20423.pep
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSL*

LD20423.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15470-PA 334 GF15470-PA 54..223 245..410 186 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24472-PA 576 GG24472-PA 1..568 1..534 1753 65.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22358-PA 662 GH22358-PA 216..554 94..408 208 26.4 Plus
Dgri\GH23164-PA 416 GH23164-PA 124..298 234..408 191 26.1 Plus
Dgri\GH22539-PA 302 GH22539-PA 49..285 153..370 185 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9641-PA 535 CG9641-PA 1..535 1..535 2849 100 Plus
CG9641-PB 443 CG9641-PB 1..443 93..535 2341 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19684-PA 634 GI19684-PA 221..558 72..408 185 22.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21525-PA 354 GL21525-PA 88..327 155..411 320 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26314-PB 371 GA26314-PB 106..344 156..411 319 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18182-PA 538 GM18182-PA 1..538 1..535 2362 85.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22789-PA 536 GD22789-PA 1..536 1..535 2332 84.6 Plus
Dsim\GD24766-PA 267 GD24766-PA 44..185 217..360 189 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14972-PA 599 GE14972-PA 1..558 1..522 1696 63.9 Plus

LD20423.hyp Sequence

Translation from 57 to 1664

> LD20423.hyp
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSL*

LD20423.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9641-PA 535 CG9641-PA 1..535 1..535 2849 100 Plus
CG9641-PB 443 CG9641-PB 1..443 93..535 2341 100 Plus