Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD20423.complete Sequence
1935 bp (1935 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061288
> LD20423.complete
CGACAAGTGCAGTTAACATTTTGTGTGAGTATTAGAACTAACTAGAATAA
TTAGAAAATGGAGGCCACCTACCGCCAGGAACGGGAATGGCTCAATGCCC
GCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCTTATCGCGGC
TATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCCAAATCAGAC
CCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGTTCCCCTCCA
TGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCCAACTCTAAC
TGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCGCGACCCCTC
GTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGCCCGGCAACG
GCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCATCCATGCAG
GTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAAGGAGCTATC
GCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATCTGGACACGG
GCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGACGCACCAGT
CCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGACCGCGGACG
CAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCAAGCGTGCGA
ATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTAAAGAAGCAG
AGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTATTACCATGGC
AATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATCAGCAATTGC
ATGAGATCGAAGCCGGCCTTGTGGAGGAGTTGAAAAAGGGTTGGAAGTCC
AGCATCAATTTTGGGGGCATTCAATTTCTTACTGGAATGATCCAAGTTGT
CTGCATGGACAAGAACTCCCGCCAATGGCTGGAGCATGCGATTTCCAAGA
TCACGGCGTTACCGGAAACTAAACTAATTTGTTGTCCGGAGGATGATATT
CCGGCCACAAAGGGAATCACAGTCAGAGTACCACGTTCAGCTGATGAGCC
CGATAAGGTCACGTTTCAACTTTTAAAAGACCAGAATAGCGACCTTCTGT
CGAAGACTTGGGAATTTGGCCGTATAAGCCAGACCAAGGATGGCAAGGTG
GTAGTAATAAGCTGTGGCAGTAAGTCTTACAACCTGGTGCAGAAGAAGGG
CTTTTGCCTTAGCTACCGTTTTAACCAGCTCAATTGCCGCGAGATAAGTG
GCAAGGAGGCCCTCAAGGCGGTTCGCAGCTCAGAGGCTAGGTCCACCGCC
GAGTTATCTGAAATTGACCTAACCGAAGAGGACGGCGAAGAGTTCATTTC
TCATCTTGATCTGACCGTTGTGGACGAAGTGAAGGGAGATGATGATGATG
AAAATGAGAATGAGATGACTGAAGATCATGATGAGGTGGAAGAGGCAGCT
GAAGAGCAACACGATGATGTGGAGTTCATTGAAGAGGAGCCGGGCGAGAA
GAGCAATGATGTAGAGGTCACTCCTGAAGCGGAGGGCGAGGAGTGCGAAG
AGCCTCATCAGGAGGAAGAGAATTGCAACGCTGAGGTGGTTAATGAAGAC
ACATGCTCCTTGTAAGCAAGCCGATGGGTAACGGGATTCATGGAACATTT
TAAACTGAATAACACACCCTAAACATATTTGACATACGAAATGACATGAC
AACGGAACAAGGACAGCAGTATCGTGCAGCTTCACAAGTGAATTCTCACT
GCAATATCAGTTCATACTGCCTCAAGTCGACATTAACCATAAGGATTTCA
TATTATAAAATACACCAAAGAAATATGTAATATACTTCTCAATAAACACT
CACTACCACATTTAAAAAAAAAAAAAAAAAAAAAA
LD20423.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9641-RA | 1996 | CG9641-RA | 79..1996 | 1..1918 | 9590 | 100 | Plus |
CG9641.a | 2149 | CG9641.a | 232..2149 | 1..1918 | 9590 | 100 | Plus |
CG9641-RB | 1774 | CG9641-RB | 145..1774 | 289..1918 | 8150 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 2974786..2976478 | 1693..1 | 8450 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 2974510..2974716 | 1913..1692 | 805 | 91.9 | Minus |
chr2RHet | 3288813 | chr2RHet | 1951837..1951911 | 1836..1761 | 255 | 92.1 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2975150..2976842 | 1693..1 | 8465 | 100 | Minus |
2L | 23513712 | 2L | 2974854..2975080 | 1918..1692 | 1135 | 100 | Minus |
2R | 25286936 | 2R | 3168698..3168772 | 1836..1761 | 240 | 90.8 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2975150..2976842 | 1693..1 | 8465 | 100 | Minus |
2L | 23513712 | 2L | 2974854..2975080 | 1918..1692 | 1135 | 100 | Minus |
2R | 25260384 | 2R | 3168698..3168772 | 1836..1761 | 250 | 90.7 | Minus |
2R | 25260384 | 2R | 3168783..3168819 | 1728..1692 | 170 | 97.2 | Minus |
Blast to na_te.dros performed on 2019-03-16 09:19:30 has no hits.
LD20423.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:20:10 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 2974584..2974715 | 1693..1824 | 97 | <- | Minus |
chr2L | 2974510..2974583 | 1840..1913 | 100 | == | Minus |
chr2L | 2974787..2976478 | 1..1692 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:45 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 1..1608 | 58..1665 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:18 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 1..1608 | 58..1665 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:59:53 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 1..1608 | 58..1665 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:06 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 1..1608 | 58..1665 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:06 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 1..1608 | 58..1665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:25 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 18..1930 | 1..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:18 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 18..1930 | 1..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:59:53 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 21..1933 | 1..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:06 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 18..1930 | 1..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:06 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9641-RA | 21..1933 | 1..1913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2974859..2975079 | 1693..1913 | 100 | <- | Minus |
2L | 2975151..2976842 | 1..1692 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2974859..2975079 | 1693..1913 | 100 | <- | Minus |
2L | 2975151..2976842 | 1..1692 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:20:10 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2974859..2975079 | 1693..1913 | 100 | <- | Minus |
2L | 2975151..2976842 | 1..1692 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:59:53 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2974859..2975079 | 1693..1913 | 100 | <- | Minus |
arm_2L | 2975151..2976842 | 1..1692 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:47 Download gff for
LD20423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2974859..2975079 | 1693..1913 | 100 | <- | Minus |
2L | 2975151..2976842 | 1..1692 | 100 | | Minus |
LD20423.pep Sequence
Translation from 57 to 1664
> LD20423.pep
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSL*
LD20423.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF15470-PA | 334 | GF15470-PA | 54..223 | 245..410 | 186 | 28.1 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24472-PA | 576 | GG24472-PA | 1..568 | 1..534 | 1753 | 65.2 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH22358-PA | 662 | GH22358-PA | 216..554 | 94..408 | 208 | 26.4 | Plus |
Dgri\GH23164-PA | 416 | GH23164-PA | 124..298 | 234..408 | 191 | 26.1 | Plus |
Dgri\GH22539-PA | 302 | GH22539-PA | 49..285 | 153..370 | 185 | 26.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9641-PA | 535 | CG9641-PA | 1..535 | 1..535 | 2849 | 100 | Plus |
CG9641-PB | 443 | CG9641-PB | 1..443 | 93..535 | 2341 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI19684-PA | 634 | GI19684-PA | 221..558 | 72..408 | 185 | 22.6 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21525-PA | 354 | GL21525-PA | 88..327 | 155..411 | 320 | 33.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA26314-PB | 371 | GA26314-PB | 106..344 | 156..411 | 319 | 33.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM18182-PA | 538 | GM18182-PA | 1..538 | 1..535 | 2362 | 85.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22789-PA | 536 | GD22789-PA | 1..536 | 1..535 | 2332 | 84.6 | Plus |
Dsim\GD24766-PA | 267 | GD24766-PA | 44..185 | 217..360 | 189 | 31 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE14972-PA | 599 | GE14972-PA | 1..558 | 1..522 | 1696 | 63.9 | Plus |
LD20423.hyp Sequence
Translation from 57 to 1664
> LD20423.hyp
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSL*
LD20423.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9641-PA | 535 | CG9641-PA | 1..535 | 1..535 | 2849 | 100 | Plus |
CG9641-PB | 443 | CG9641-PB | 1..443 | 93..535 | 2341 | 100 | Plus |