BDGP Sequence Production Resources |
Search the DGRC for LD20439
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 204 |
Well: | 39 |
Vector: | pBS SK- |
Associated Gene/Transcript | SamDC-RA |
Protein status: | LD20439.pep: gold |
Preliminary Size: | 1355 |
Sequenced Size: | 1234 |
Gene | Date | Evidence |
---|---|---|
CG5029 | 2001-01-01 | Release 2 assignment |
CG5029 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5029 | 2004-08-12 | Blastp of sequenced clone |
SamDC | 2008-04-29 | Release 5.5 accounting |
SamDC | 2008-08-15 | Release 5.9 accounting |
SamDC | 2008-12-18 | 5.12 accounting |
1234 bp (1234 high quality bases) assembled on 2004-08-12
GenBank Submission: BT021946
> LD20439.complete TTTTGGTATCAGATCAGATCCATTTGTTATTGCCAGCCAGCAGCATGTTG GAGAACGGTTCGCACTTCTTCGAGGGCGTTGAGAAACTCCTTGAGATTTG GTTTGAGGAGAGCTCCAACGGTGACGATGATCTGCGTAACATCAGCAGAT CTGATTGGGAAAACGTGCTTAGCAATGTCAACTGTCAAATAATAAGCACA TCCAAAAACGACATTATTGATGCTTTTGTGTTAAGTGAGAGCAGTATGTT TGTTTCAAAGCGACGATGGATCCTTAAAACTTGTGGAACGACTACTCCAT TGAAATGCCTGGGTCAGTTGCTTAAGCTGGCTGAGGCCAATGGATACAAT GTGGTCGCAGACTTGTTCTACTCGCGAAAAAATTTCACTAGACCGGAGGC GCAGATAACTCCCCATCAAGGCTTTACGGAGGAAGTTACGTATCTGGACT CAATTTTTCCCAACGGAAGATCCTATTGTCTGGGCTCCATGAACCTGGAG TGTTGGTACCTCTACACTTTTAGTCGTTCTGATATCAAAATTACGCCCCA ACTTATATCGGATGAGAAAAACGTTGACTCCGATCCAGATCAAACTATTG AAATATTAATGCAAGATCTAGATCCCGAAACCATGTCAATCTTCTATAAA AACAAGTTTAATGATGCTAATGGCGCTACTGTGAAATCTGGTATCGATAC CATATTGCCGACTATGCACATTGATGACTTTTTGTTCGATCCTTGCGGCT ACTCCATGAATGGAATCAACGATAAGGGGGAGTACATGACAATTCATATT ACTCCGGAGAATCAATTTTCGTATGTGAGCTTCGAAACAAATGTGGCTCT AAGTAACTATCGTAAACTTATCAATCAAGTAATCAATACTTTCAAGCCGG GAAAGTTTATTGTAACCATCTTTGCCAATAAGTGCTCGTTGGCCTACGAA ACTATGAAGGAACTGGAAGTGGAGTACTCACAGGGATCGCACTGGAAACG AACCGACATGCAATGTTGCAACTTTCCATCTTACAATCTTCTGTTTGCAC AATATTCCCACAGTGAGAAAACTGGTGATAATTTATAAAATTCCAAAGCC AACAGCAATTGTGATTGTTTTGCGTATGTCTAACAAAATTTATTTTTCGT TCGTTATTAATTATTCAAAATAAATGTCGAATAAATAAAATAATAAATAC TACTACTACTAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10339382..10339663 | 402..683 | 1410 | 100 | Plus |
chr2L | 23010047 | chr2L | 10340076..10340355 | 931..1210 | 1400 | 100 | Plus |
chr2L | 23010047 | chr2L | 10339161..10339331 | 234..404 | 855 | 100 | Plus |
chr2L | 23010047 | chr2L | 10339858..10340015 | 775..932 | 790 | 100 | Plus |
chr2L | 23010047 | chr2L | 10338320..10338467 | 1..148 | 740 | 100 | Plus |
chr2L | 23010047 | chr2L | 10339718..10339812 | 683..777 | 475 | 100 | Plus |
chr2L | 23010047 | chr2L | 10339001..10339090 | 146..235 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10341224..10341506 | 931..1213 | 1415 | 100 | Plus |
2L | 23513712 | 2L | 10340530..10340811 | 402..683 | 1410 | 100 | Plus |
2L | 23513712 | 2L | 10340309..10340479 | 234..404 | 855 | 100 | Plus |
2L | 23513712 | 2L | 10341006..10341163 | 775..932 | 790 | 100 | Plus |
2L | 23513712 | 2L | 10339471..10339618 | 1..148 | 740 | 100 | Plus |
2L | 23513712 | 2L | 10340866..10340960 | 683..777 | 475 | 100 | Plus |
2L | 23513712 | 2L | 10340149..10340238 | 146..235 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10341224..10341506 | 931..1213 | 1415 | 100 | Plus |
2L | 23513712 | 2L | 10340530..10340811 | 402..683 | 1410 | 100 | Plus |
2L | 23513712 | 2L | 10340309..10340479 | 234..404 | 855 | 100 | Plus |
2L | 23513712 | 2L | 10341006..10341163 | 775..932 | 790 | 100 | Plus |
2L | 23513712 | 2L | 10339471..10339618 | 1..148 | 740 | 100 | Plus |
2L | 23513712 | 2L | 10340866..10340960 | 683..777 | 475 | 100 | Plus |
2L | 23513712 | 2L | 10340149..10340238 | 146..235 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 3922..3991 | 720..649 | 111 | 65.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10338320..10338467 | 1..148 | 100 | -> | Plus |
chr2L | 10339004..10339090 | 149..235 | 100 | -> | Plus |
chr2L | 10339163..10339331 | 236..404 | 100 | -> | Plus |
chr2L | 10339385..10339663 | 405..683 | 100 | -> | Plus |
chr2L | 10339719..10339811 | 684..776 | 100 | -> | Plus |
chr2L | 10339860..10340015 | 777..932 | 100 | -> | Plus |
chr2L | 10340078..10340355 | 933..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1044 | 45..1088 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1044 | 45..1088 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1044 | 45..1088 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1044 | 45..1088 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1044 | 45..1088 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1210 | 1..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 1..1210 | 1..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 15..1224 | 1..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 12..1221 | 1..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SamDC-RA | 15..1224 | 1..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10340867..10340959 | 684..776 | 100 | -> | Plus |
2L | 10341008..10341163 | 777..932 | 100 | -> | Plus |
2L | 10341226..10341503 | 933..1210 | 100 | Plus | |
2L | 10339471..10339618 | 1..148 | 100 | -> | Plus |
2L | 10340152..10340238 | 149..235 | 100 | -> | Plus |
2L | 10340311..10340479 | 236..404 | 100 | -> | Plus |
2L | 10340533..10340811 | 405..683 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10340867..10340959 | 684..776 | 100 | -> | Plus |
2L | 10341008..10341163 | 777..932 | 100 | -> | Plus |
2L | 10341226..10341503 | 933..1210 | 100 | Plus | |
2L | 10339471..10339618 | 1..148 | 100 | -> | Plus |
2L | 10340152..10340238 | 149..235 | 100 | -> | Plus |
2L | 10340311..10340479 | 236..404 | 100 | -> | Plus |
2L | 10340533..10340811 | 405..683 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10340867..10340959 | 684..776 | 100 | -> | Plus |
2L | 10341008..10341163 | 777..932 | 100 | -> | Plus |
2L | 10341226..10341503 | 933..1210 | 100 | Plus | |
2L | 10339471..10339618 | 1..148 | 100 | -> | Plus |
2L | 10340152..10340238 | 149..235 | 100 | -> | Plus |
2L | 10340311..10340479 | 236..404 | 100 | -> | Plus |
2L | 10340533..10340811 | 405..683 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10340867..10340959 | 684..776 | 100 | -> | Plus |
arm_2L | 10341008..10341163 | 777..932 | 100 | -> | Plus |
arm_2L | 10339471..10339618 | 1..148 | 100 | -> | Plus |
arm_2L | 10340152..10340238 | 149..235 | 100 | -> | Plus |
arm_2L | 10340311..10340479 | 236..404 | 100 | -> | Plus |
arm_2L | 10340533..10340811 | 405..683 | 100 | -> | Plus |
arm_2L | 10341226..10341503 | 933..1210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10340533..10340811 | 405..683 | 100 | -> | Plus |
2L | 10340867..10340959 | 684..776 | 100 | -> | Plus |
2L | 10341008..10341163 | 777..932 | 100 | -> | Plus |
2L | 10341226..10341503 | 933..1210 | 100 | Plus | |
2L | 10339471..10339618 | 1..148 | 100 | -> | Plus |
2L | 10340152..10340238 | 149..235 | 100 | -> | Plus |
2L | 10340311..10340479 | 236..404 | 100 | -> | Plus |
Translation from 2 to 1087
> LD20439.hyp LVSDQIHLLLPASSMLENGSHFFEGVEKLLEIWFEESSNGDDDLRNISRS DWENVLSNVNCQIISTSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPL KCLGQLLKLAEANGYNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDS IFPNGRSYCLGSMNLECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIE ILMQDLDPETMSIFYKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGY SMNGINDKGEYMTIHITPENQFSYVSFETNVALSNYRKLINQVINTFKPG KFIVTIFANKCSLAYETMKELEVEYSQGSHWKRTDMQCCNFPSYNLLFAQ YSHSEKTGDNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SamDC-PA | 347 | CG5029-PA | 1..347 | 15..361 | 1849 | 100 | Plus |
Translation from 44 to 1087
> LD20439.pep MLENGSHFFEGVEKLLEIWFEESSNGDDDLRNISRSDWENVLSNVNCQII STSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANG YNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDSIFPNGRSYCLGSMN LECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIF YKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTI HITPENQFSYVSFETNVALSNYRKLINQVINTFKPGKFIVTIFANKCSLA YETMKELEVEYSQGSHWKRTDMQCCNFPSYNLLFAQYSHSEKTGDNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15768-PA | 349 | GF15768-PA | 1..349 | 1..347 | 1645 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10109-PA | 347 | GG10109-PA | 1..347 | 1..347 | 1780 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24050-PA | 344 | GH24050-PA | 1..339 | 2..340 | 1397 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SamDC-PA | 347 | CG5029-PA | 1..347 | 1..347 | 1849 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21472-PA | 355 | GI21472-PA | 8..350 | 2..340 | 1338 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18975-PA | 346 | GL18975-PA | 1..341 | 1..342 | 1507 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18181-PA | 347 | GM18181-PA | 1..347 | 1..347 | 1858 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23679-PA | 317 | GD23679-PA | 5..317 | 35..347 | 1682 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16493-PA | 344 | GJ16493-PA | 5..339 | 6..340 | 1398 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24064-PA | 163 | GK24064-PA | 1..126 | 121..246 | 454 | 65.9 | Plus |
Dwil\GK19329-PA | 101 | GK19329-PA | 1..98 | 245..342 | 438 | 82.7 | Plus |
Dwil\GK18922-PA | 98 | GK18922-PA | 1..95 | 248..342 | 421 | 82.1 | Plus |
Dwil\GK24062-PA | 100 | GK24062-PA | 1..89 | 33..121 | 344 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\SamDC-PA | 347 | GE18924-PA | 1..347 | 1..347 | 1797 | 94.8 | Plus |