Clone LD20463 Report

Search the DGRC for LD20463

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:204
Well:63
Vector:pBS SK-
Associated Gene/TranscriptSans-RA
Protein status:LD20463.pep: gold
Preliminary Size:1943
Sequenced Size:1879

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13320 2001-01-01 Release 2 assignment
CG13320 2003-01-01 Sim4 clustering to Release 3
CG13320 2003-08-05 Blastp of sequenced clone
Sans 2008-04-29 Release 5.5 accounting
Sans 2008-08-15 Release 5.9 accounting
Sans 2008-12-18 5.12 accounting

Clone Sequence Records

LD20463.complete Sequence

1879 bp (1879 high quality bases) assembled on 2005-08-22

GenBank Submission: BT009925

> LD20463.complete
GCTTCCGGGTAACGGCTTTCGGAACGTGCATATTCTACCGATCGCAGATG
AAAACTTTCGGTTCGTTTGGCTAAAAAGAAAAGTGTCAAGCTGCCCGGAG
TGGGAAAATCCAATTTGAAATCCTGCATTTGAAAAGTCGTCTTGAACCGG
GACAACTAACTGATCGATTCAAGAATTTCCATCGCCAACCTGATTGAAAG
ATAACACAGACGAATATGTCATCGGATCGGTTTCACAAAGCCGCCAAAGA
TGGGCTGTTGGATGTGTTGGCAGCAGCCACACGGAAGGATACGAATGCCA
AGGACAGTGATTCCATGACGCCGGTCATGTGGGCTGCCTTCGAGGGGCGT
CTGGATGCACTGCGTCTGCTGTGCGGAAGGGGTGGTGACCCTGACAAATG
CGATCAGTTCGGAAACACAGCCTTGCACTTGGCCTCCGCCAAGGGTCATT
TGCATTGCGTCGACTTCTTGGTGAAATTCGGAGTAAACATCTATGCCTTG
GATATCGATAAGCACAGCGCCAAGGATCTGGCGGCTATTAATGGCAGGGA
CGAGATCCTGCGCTACTTGGATGTTGCCTTCACAAACTTTGAGGCCACTG
AAAAAAAAAAAAGCAAGGCCCTGAAAGAATTGGCCGAGAAAAACTGCGAG
AAACGTGTTAGGGAGTACATGAAGCGCCAGAATCAGCAGCAACAGCGCCA
GGATCCGGAGTATTCGGATCTAAGCGCACCCAGTGGCTCCAGCAAGACCG
GCAACATGCTGTCCACTCTGAAGCAGAAGATCTGGTCCAGCCAGGGCAAT
CTAAATAAGACACCAAGGGATACACCGCCTCCCACAAAGTTCAGCGATCT
GGTTGGGAACGGTAGCAGCAGCAGCGGTGGCTCCACAATAGCCAGTCGAG
CGGGAACGGTGCAAAAGAGACCGTCGCAGCTCCAAAAGCAGCACAGCAGC
ACATGTCCACACTCGAAGATATCCAGCGACACAGACGGTGGCTTCAAGGT
GCGCGAGGTGGAGCCAGATGGAAAGCGAACCATTACATCGCTTACGGGTC
TGCAGAGAGACTCCGAGGTGCTGTATGTGGGCACCTTTAGTTCCAACGAG
GACAGTGTCGGCAAGCGCGGCAAGATCAGCGATGTTTTTGAGTGCATGGA
GGCCGATGAGTTGGACCACAGCGATAACCGCAGTGGCTATAGCTCTACTT
TAGCGCGTTCCTTCTCCCAACCGGATATTCTGGGGGATGGTCAGTTGACC
CAGGAACTAAGCGAGGAAGTGACCCTCCAGAGACCCGTTGGACTCTTCGA
TAGACCCACCATGCTGGGCAGCATTGCCTTTCGTCGATCCGTAACTGCTG
CTTTAAGTCAGCTTCAACTGCACACGGACACCAGTTCCACTTCCACGATG
CGGAATGCGGGCAGCAATCCTCCAAAGACACGAAATGGCGGAGGAAAGGG
TCGTTTATATTTGAACCTTTCGGATGATACGGACTCGGAGGGCGGCGGTC
ATGACATCTATAGCGATGATGACGACGACGACCGAGATGCCGGAGGAAGT
GCCTTGCAGCGATTCCTGGCCGTTTGGGCCCTGGAAGAATACCTGCCAGT
ATTTCAGAAGCAAGAGATCGACTTGGAGACTCTGATGCTGCTCACAGAAT
CGGACCTTAAGTCACTTGGCTTGCCACTGGGGCCATTCCGTAAACTCACC
TTCGCCATTCAGGAGAGACGTAACGCCCTGGCCAATCCCGGACCCCTGGT
AGACAGTCGACTGTAGTAGTTGGCCTAATCATTCTATTTTTTTTGTAATA
CTTCAACATGTTCAATTAGCCTAGTGTACATACTAAATTAAAGCCTAACA
ATTATCACTCCAAAAAAAAAAAAAAAAAA

LD20463.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Sans-RB 2055 Sans-RB 191..2052 1..1862 9310 100 Plus
Sans-RA 2062 Sans-RA 360..2059 163..1862 8500 100 Plus
Sans.a 1792 Sans.a 93..1792 162..1861 8500 100 Plus
Sans-RA 2062 Sans-RA 191..352 1..162 810 100 Plus
Sans.a 1792 Sans.a 34..93 1..60 300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8826412..8827407 605..1600 4980 100 Plus
chr2R 21145070 chr2R 8827477..8827737 1601..1861 1305 100 Plus
chr2R 21145070 chr2R 8826099..8826321 382..604 1115 100 Plus
chr2R 21145070 chr2R 8824253..8824414 1..162 810 100 Plus
chr2R 21145070 chr2R 8825893..8826036 239..382 720 100 Plus
chr2R 21145070 chr2R 8825724..8825800 162..238 385 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12939087..12940082 605..1600 4980 100 Plus
2R 25286936 2R 12940152..12940413 1601..1862 1310 100 Plus
2R 25286936 2R 12938774..12938996 382..604 1115 100 Plus
2R 25286936 2R 12936928..12937089 1..162 810 100 Plus
2R 25286936 2R 12938568..12938711 239..382 720 100 Plus
2R 25286936 2R 12938399..12938475 162..238 385 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12940286..12941281 605..1600 4980 100 Plus
2R 25260384 2R 12941351..12941612 1601..1862 1310 100 Plus
2R 25260384 2R 12939973..12940195 382..604 1115 100 Plus
2R 25260384 2R 12938127..12938288 1..162 810 100 Plus
2R 25260384 2R 12939767..12939910 239..382 720 100 Plus
2R 25260384 2R 12939598..12939674 162..238 385 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:27:49 has no hits.

LD20463.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:28:38 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8824253..8824414 1..162 100 -> Plus
chr2R 8825725..8825800 163..238 100 -> Plus
chr2R 8825893..8826036 239..382 100 -> Plus
chr2R 8826100..8826321 383..604 100 -> Plus
chr2R 8826412..8827407 605..1600 100 -> Plus
chr2R 8827477..8827737 1601..1861 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:49 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 1..1551 216..1766 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:40 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 1..1551 216..1766 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:46 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RA 1..1551 216..1766 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:19 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 1..1551 216..1766 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:18 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RA 1..1551 216..1766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:22 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 34..1894 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:40 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 34..1894 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:46 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 38..1898 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:19 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 34..1894 1..1861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:18 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
Sans-RB 38..1898 1..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:38 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12936928..12937089 1..162 100 -> Plus
2R 12938400..12938475 163..238 100 -> Plus
2R 12938568..12938711 239..382 100 -> Plus
2R 12938775..12938996 383..604 100 -> Plus
2R 12939087..12940082 605..1600 100 -> Plus
2R 12940152..12940412 1601..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:38 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12936928..12937089 1..162 100 -> Plus
2R 12938400..12938475 163..238 100 -> Plus
2R 12938568..12938711 239..382 100 -> Plus
2R 12938775..12938996 383..604 100 -> Plus
2R 12939087..12940082 605..1600 100 -> Plus
2R 12940152..12940412 1601..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:38 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12936928..12937089 1..162 100 -> Plus
2R 12938400..12938475 163..238 100 -> Plus
2R 12938568..12938711 239..382 100 -> Plus
2R 12938775..12938996 383..604 100 -> Plus
2R 12939087..12940082 605..1600 100 -> Plus
2R 12940152..12940412 1601..1861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:46 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8827657..8827917 1601..1861 100   Plus
arm_2R 8824433..8824594 1..162 100 -> Plus
arm_2R 8825905..8825980 163..238 100 -> Plus
arm_2R 8826073..8826216 239..382 100 -> Plus
arm_2R 8826280..8826501 383..604 100 -> Plus
arm_2R 8826592..8827587 605..1600 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:55 Download gff for LD20463.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12939974..12940195 383..604 100 -> Plus
2R 12940286..12941281 605..1600 100 -> Plus
2R 12941351..12941611 1601..1861 100   Plus
2R 12938127..12938288 1..162 100 -> Plus
2R 12939599..12939674 163..238 100 -> Plus
2R 12939767..12939910 239..382 100 -> Plus

LD20463.pep Sequence

Translation from 215 to 1765

> LD20463.pep
MSSDRFHKAAKDGLLDVLAAATRKDTNAKDSDSMTPVMWAAFEGRLDALR
LLCGRGGDPDKCDQFGNTALHLASAKGHLHCVDFLVKFGVNIYALDIDKH
SAKDLAAINGRDEILRYLDVAFTNFEATEKKKSKALKELAEKNCEKRVRE
YMKRQNQQQQRQDPEYSDLSAPSGSSKTGNMLSTLKQKIWSSQGNLNKTP
RDTPPPTKFSDLVGNGSSSSGGSTIASRAGTVQKRPSQLQKQHSSTCPHS
KISSDTDGGFKVREVEPDGKRTITSLTGLQRDSEVLYVGTFSSNEDSVGK
RGKISDVFECMEADELDHSDNRSGYSSTLARSFSQPDILGDGQLTQELSE
EVTLQRPVGLFDRPTMLGSIAFRRSVTAALSQLQLHTDTSSTSTMRNAGS
NPPKTRNGGGKGRLYLNLSDDTDSEGGGHDIYSDDDDDDRDAGGSALQRF
LAVWALEEYLPVFQKQEIDLETLMLLTESDLKSLGLPLGPFRKLTFAIQE
RRNALANPGPLVDSRL*

LD20463.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12931-PA 523 GF12931-PA 1..523 1..516 2289 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20348-PA 516 GG20348-PA 1..516 1..516 2681 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20306-PA 542 GH20306-PA 1..542 1..516 1894 75.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sans-PB 516 CG13320-PB 1..516 1..516 2656 100 Plus
Sans-PA 516 CG13320-PA 1..516 1..516 2656 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19976-PA 528 GI19976-PA 1..528 1..516 1709 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16989-PA 526 GL16989-PA 1..526 1..516 2211 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12202-PA 526 GA12202-PA 1..526 1..516 2215 83.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21435-PA 516 GM21435-PA 1..516 1..516 2685 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21229-PA 529 GJ21229-PA 1..529 1..516 1933 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20770-PA 509 GK20770-PA 1..509 1..516 1981 79.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12507-PA 516 GE12507-PA 1..516 1..516 2679 97.5 Plus

LD20463.hyp Sequence

Translation from 215 to 1765

> LD20463.hyp
MSSDRFHKAAKDGLLDVLAAATRKDTNAKDSDSMTPVMWAAFEGRLDALR
LLCGRGGDPDKCDQFGNTALHLASAKGHLHCVDFLVKFGVNIYALDIDKH
SAKDLAAINGRDEILRYLDVAFTNFEATEKKKSKALKELAEKNCEKRVRE
YMKRQNQQQQRQDPEYSDLSAPSGSSKTGNMLSTLKQKIWSSQGNLNKTP
RDTPPPTKFSDLVGNGSSSSGGSTIASRAGTVQKRPSQLQKQHSSTCPHS
KISSDTDGGFKVREVEPDGKRTITSLTGLQRDSEVLYVGTFSSNEDSVGK
RGKISDVFECMEADELDHSDNRSGYSSTLARSFSQPDILGDGQLTQELSE
EVTLQRPVGLFDRPTMLGSIAFRRSVTAALSQLQLHTDTSSTSTMRNAGS
NPPKTRNGGGKGRLYLNLSDDTDSEGGGHDIYSDDDDDDRDAGGSALQRF
LAVWALEEYLPVFQKQEIDLETLMLLTESDLKSLGLPLGPFRKLTFAIQE
RRNALANPGPLVDSRL*

LD20463.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sans-PB 516 CG13320-PB 1..516 1..516 2656 100 Plus
Sans-PA 516 CG13320-PA 1..516 1..516 2656 100 Plus