Clone LD20519 Report

Search the DGRC for LD20519

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:205
Well:19
Vector:pBS SK-
Associated Gene/TranscriptCG7860-RA
Protein status:LD20519.pep: gold
Preliminary Size:1326
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7860 2001-10-10 Blastp of sequenced clone
CG7860 2003-01-01 Sim4 clustering to Release 3
CG7860 2008-04-29 Release 5.5 accounting
CG7860 2008-08-15 Release 5.9 accounting
CG7860 2008-12-18 5.12 accounting

Clone Sequence Records

LD20519.complete Sequence

1210 bp (1210 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061292

> LD20519.complete
CTCGAGCTGCCTGCCACATCTCCATAAAATCTCCGTAGCTGACAGCGAAT
ATTATCGAAATGCCACGCCCAGTTCTGCTCATTCACGGTGGAGCCGGTGA
TATATCGGACTCCAGGATAGCGGGCAAGTTCGCGGGCATTAAGCAGGCAC
TGCGCTCCGCCTGGGGGCTACTGAGTCCGGACAATGGCAGCGGCGGAGGC
AGTGCCCTGGATGCCGTAGAGGCGGCGGTGCGCAGCATGGAGCTGGACGA
GAACTTCAACGCCGGCTACGGCTCCTGCCTGAACACCAGTGGCCAGGTGG
AGCTAGAGGCCAGTTTAATGGAGGGCCGCGACTTGCGAGCCGGCTGCATA
ACCCTGCTGCGGGATGTGATGCACCCGATTACAGTGGCGCGTCGCCTGAT
GGAGAAGCAGCGACACACCTTTCTTGGCGGCGCAGCGGCCCAGGAGCTGG
CACTAGCCACGGGCAGCGAACGACTGCAGCCGGGAGCACTGGTCACCGAG
GGGGCTCGCTTAACGCTGAAGGAATTCGAGGATCAGGTGGCCCAGGGCAA
GGATCCCTTCTTCGCGCGCACCGAACTGACCGATGACAAGCCGGTGCCGA
AAACGGATCCCAGTGGCGAAACAGTCGGAGCGGTTGCCATGGACGCATCG
GGCCAAATAGTGGTGGGCACCTCCACCGGCGGCATCACCGGCAAGTGGCC
GGGTCGCATTGGGGACACACCCATTCTCGGCAGCGGCACCTATGCGGATA
ACTGCCGTGGAGGCGTCTCCACCACCGGACATGGCGAGACCCTCATGCGT
TACAATCTGGCCCAGCGCATTCTGTCCGCCATGGAGTACCAGGGACTGTC
CGCCCAGGCAGCCGCCGACAAGGAGTGCCGCGAGATGACCAAACGGCTGG
GTGGCACTGGTGGCGCCATCGTGGTTGGCCACTCCGGTGACCTGGGCATC
AGTTTCACGTCGCGTCGCATGGCGTGGGGATATGTCCAGGATGGCACCAT
CTTTTACGGCATCGAGGGTCAGGTGGTGCACCAGGAACCGTTCACACTTT
CCACGTAACTAAATTCGGAGTACCTACCTATCCAAGGATTTATCAAAATC
CCAGTAGAATAGTAAACAAATTAAAGAATCTTCTTTCATTTCAAAAAGTT
ACATAAATAAATTTGACTTGTTTTAATAAGAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAA

LD20519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-RA 1449 CG7860-RA 194..1378 1..1185 5925 100 Plus
CG7860.a 1316 CG7860.a 194..1247 1..1054 5270 100 Plus
CG15643-RA 1692 CG15643-RA 1655..1692 1185..1148 190 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15459103..15460289 1..1184 5720 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15569186..15570370 1..1185 5925 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15577284..15578468 1..1185 5925 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:31:25 has no hits.

LD20519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:32:26 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15459103..15460289 1..1184 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:51 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 60..1058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:11 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 60..1058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:25 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 60..1058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:17:59 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 60..1058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:49 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 1..999 60..1058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:22 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 194..1377 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:11 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 194..1377 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:25 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 194..1377 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:17:59 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 194..1377 1..1184 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:49 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
CG7860-RA 194..1377 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:26 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
X 15569186..15570369 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:26 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
X 15569186..15570369 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:26 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
X 15569186..15570369 1..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:25 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15463219..15464402 1..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:54:54 Download gff for LD20519.complete
Subject Subject Range Query Range Percent Splice Strand
X 15577284..15578467 1..1184 100   Plus

LD20519.pep Sequence

Translation from 59 to 1057

> LD20519.pep
MPRPVLLIHGGAGDISDSRIAGKFAGIKQALRSAWGLLSPDNGSGGGSAL
DAVEAAVRSMELDENFNAGYGSCLNTSGQVELEASLMEGRDLRAGCITLL
RDVMHPITVARRLMEKQRHTFLGGAAAQELALATGSERLQPGALVTEGAR
LTLKEFEDQVAQGKDPFFARTELTDDKPVPKTDPSGETVGAVAMDASGQI
VVGTSTGGITGKWPGRIGDTPILGSGTYADNCRGGVSTTGHGETLMRYNL
AQRILSAMEYQGLSAQAAADKECREMTKRLGGTGGAIVVGHSGDLGISFT
SRRMAWGYVQDGTIFYGIEGQVVHQEPFTLST*

LD20519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21911-PA 332 GF21911-PA 1..330 1..328 1415 81 Plus
Dana\GF10660-PA 482 GF10660-PA 7..265 8..256 297 32.6 Plus
Dana\GF12478-PA 347 GF12478-PA 77..347 34..288 248 29.9 Plus
Dana\GF11609-PA 378 GF11609-PA 90..319 78..293 180 26.5 Plus
Dana\GF12480-PA 231 GF12480-PA 71..171 187..288 164 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17888-PA 331 GG17888-PA 1..331 1..332 1651 94.9 Plus
Dere\GG13500-PA 364 GG13500-PA 7..264 8..255 300 33.5 Plus
Dere\GG24090-PA 396 GG24090-PA 75..352 34..294 247 29.2 Plus
Dere\GG20738-PA 399 GG20738-PA 102..333 71..289 184 26.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12871-PA 327 GH12871-PA 1..322 1..328 1229 73.2 Plus
Dgri\GH11081-PA 326 GH11081-PA 14..311 3..319 686 46.7 Plus
Dgri\GH22932-PA 393 GH22932-PA 67..345 26..288 287 30.8 Plus
Dgri\GH14708-PA 365 GH14708-PA 7..266 8..256 278 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-PB 332 CG7860-PB 1..332 1..332 1709 100 Plus
CG7860-PA 332 CG7860-PA 1..332 1..332 1709 100 Plus
Tasp1-PB 365 CG5241-PB 7..264 8..254 287 32.6 Plus
Tasp1-PA 365 CG5241-PA 7..264 8..254 287 32.6 Plus
CG1827-PD 393 CG1827-PD 72..351 34..296 263 29.4 Plus
CG10474-PA 341 CG10474-PA 10..262 29..267 252 33.1 Plus
CG4372-PA 397 CG4372-PA 106..333 75..289 189 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14971-PA 329 GI14971-PA 1..324 1..328 1262 73.5 Plus
Dmoj\GI17598-PA 341 GI17598-PA 35..328 4..319 646 43.7 Plus
Dmoj\GI12255-PA 362 GI12255-PA 7..263 8..256 269 31.2 Plus
Dmoj\GI18418-PA 418 GI18418-PA 96..366 34..288 269 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16551-PA 325 GL16551-PA 1..325 1..329 1457 83.9 Plus
Dper\GL25099-PA 366 GL25099-PA 7..267 8..256 283 32.6 Plus
Dper\GL17147-PA 388 GL17147-PA 69..339 34..288 249 29.1 Plus
Dper\GL17509-PA 457 GL17509-PA 86..316 72..289 178 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20639-PA 325 GA20639-PA 1..325 1..329 1455 83.6 Plus
Dpse\GA18757-PA 366 GA18757-PA 7..267 8..256 283 32.6 Plus
Dpse\GA14866-PB 348 GA14866-PB 29..299 34..288 249 29.1 Plus
Dpse\GA14866-PA 388 GA14866-PA 69..339 34..288 248 29.1 Plus
Dpse\GA18140-PA 457 GA18140-PA 86..316 72..289 180 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24449-PA 365 GM24449-PA 7..265 8..255 297 33.2 Plus
Dsec\GM21137-PA 393 GM21137-PA 72..351 34..296 254 29.7 Plus
Dsec\GM15681-PA 397 GM15681-PA 106..333 75..289 177 26.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24689-PA 332 GD24689-PA 1..332 1..332 1700 96.7 Plus
Dsim\GD12517-PA 365 GD12517-PA 7..265 8..255 297 33.2 Plus
Dsim\GD25331-PA 341 GD25331-PA 10..262 29..267 251 32.7 Plus
Dsim\GD10667-PA 393 GD10667-PA 72..351 34..296 251 29.7 Plus
Dsim\GD25160-PA 397 GD25160-PA 106..333 75..289 178 26.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18932-PA 328 GJ18932-PA 1..326 1..331 1226 72.2 Plus
Dvir\GJ17943-PA 345 GJ17943-PA 35..332 3..319 713 46.1 Plus
Dvir\GJ11486-PA 360 GJ11486-PA 7..261 8..256 284 32.3 Plus
Dvir\GJ21504-PA 333 GJ21504-PA 15..285 34..288 266 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20035-PA 327 GK20035-PA 1..320 1..328 1198 70.8 Plus
Dwil\GK18410-PA 334 GK18410-PA 17..317 4..319 704 46.7 Plus
Dwil\GK18649-PA 334 GK18649-PA 17..317 4..319 704 47 Plus
Dwil\GK23937-PA 380 GK23937-PA 7..281 8..256 291 33 Plus
Dwil\GK15947-PA 336 GK15947-PA 10..285 29..288 279 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17195-PA 331 GE17195-PA 1..331 1..332 1652 94.6 Plus
Dyak\GE19799-PA 365 GE19799-PA 7..265 8..255 298 32.8 Plus
Dyak\GE19290-PA 396 GE19290-PA 75..345 34..288 251 29.5 Plus
Dyak\GE12034-PA 341 GE12034-PA 10..262 29..267 221 30.4 Plus
Dyak\GE22812-PA 298 GE22812-PA 3..197 78..254 220 31.5 Plus

LD20519.hyp Sequence

Translation from 59 to 1057

> LD20519.hyp
MPRPVLLIHGGAGDISDSRIAGKFAGIKQALRSAWGLLSPDNGSGGGSAL
DAVEAAVRSMELDENFNAGYGSCLNTSGQVELEASLMEGRDLRAGCITLL
RDVMHPITVARRLMEKQRHTFLGGAAAQELALATGSERLQPGALVTEGAR
LTLKEFEDQVAQGKDPFFARTELTDDKPVPKTDPSGETVGAVAMDASGQI
VVGTSTGGITGKWPGRIGDTPILGSGTYADNCRGGVSTTGHGETLMRYNL
AQRILSAMEYQGLSAQAAADKECREMTKRLGGTGGAIVVGHSGDLGISFT
SRRMAWGYVQDGTIFYGIEGQVVHQEPFTLST*

LD20519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7860-PB 332 CG7860-PB 1..332 1..332 1709 100 Plus
CG7860-PA 332 CG7860-PA 1..332 1..332 1709 100 Plus
Taspase1-PB 365 CG5241-PB 7..264 8..254 287 32.6 Plus
Taspase1-PA 365 CG5241-PA 7..264 8..254 287 32.6 Plus
CG1827-PD 393 CG1827-PD 72..351 34..296 263 29.4 Plus