Clone LD20590 Report

Search the DGRC for LD20590

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:205
Well:90
Vector:pBS SK-
Associated Gene/Transcriptl(3)j2D3-RA
Protein status:LD20590.pep: gold
Preliminary Size:1550
Sequenced Size:1496

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6801 2001-01-01 Release 2 assignment
CG6801 2001-10-10 Blastp of sequenced clone
CG6801 2003-01-01 Sim4 clustering to Release 3
l(3)j2D3 2008-04-29 Release 5.5 accounting
l(3)j2D3 2008-08-15 Release 5.9 accounting
l(3)j2D3 2008-12-18 5.12 accounting

Clone Sequence Records

LD20590.complete Sequence

1496 bp (1496 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061293

> LD20590.complete
GAACAGGAATTACAAAAGATATTTTTCCACCAATTATCAAAATAAAAACA
CAACAATTCACGCTATCTAGCGCTGGACACAAAAGACCGCAACGTAATGC
CGTCCAGAAATATTGACGATGCCGCCGGCGCCAAGGAGGTTCACCGAAGT
ACAAGGAATTCACTGATCGGCCCGAAGAGCAAGCGAATCGCCCTAAACAG
TCGCAATCGCAGTCTTGCTGCCGCCGAAAAGAAAACTCAGTCGCAGCTGT
CATTCCCGCCAAAATCGGAGTACGAGAAGTTCTACGAGACCGTCTTCCTG
GCGGAGGATTTGCAGCCGGAGGAAAATATAACACCAGAACGTCGTAAGCC
AGGACCGCGCATGAAGAGCTCACTCCAAGCCCTGTTGAGCGATGAAGGAT
CACCGACGGGACCACAGCGAACCGCCAAGATAAACGTTGCACAGAAAATG
GTCGTTGAGCCAGCGATCCGAGCCAATGGCATCTCGCCATTGCCCAAGAA
TGTTGGCAAGGAGGAAAAGTTTGAGGACTACTATACGAAAACGGAGCGAC
ACGTTTGGAAAAAGGATGCGGAGAAGATGTTGCTGCAACTGTGGGCACAG
CATTTGAAGGATTTTCGTGGAGAGTCCAAGAATGTGATCATCTACCGGCA
AATGGCTAGGGAGATGAGTCAGTTTGGGCCCAGCCACACGGAGCTTAAAA
CCAAAATGGACAATTTGTCGCGAAAGTATAGAATAGAAGCTGAGAGAGTT
CGGGAAACTGGAGTGCCATCCAAGTGGGAGCACTTTCATAAGCTTCAAGC
ACTTCTGATTGGCACGAAATCAGTTGATGTCTTCGAAGATATTACCGCCG
AAAATCCAGCTCAAGCTTTGTTCAGCGATGAGGATTATGAGCCTGAGGAA
TTGTCTTCATTAAAAGACGAGCCTATGGCCGGGGACGATGGGAACGTATT
CGAAAGTGATATGGTTGCTAGCAAAGCCATGAAAAGAACGCGAACTCCCT
CTCCCAGTATTCCGGAAATCCCGGAAGAAGACGAGGAGGAGGAGGAGGAG
GAGGAGGATGATGACCACATGAAGGATCTCTCCCCATCGCCAATTTCAAA
ATGTCAGACAAAACGGAAAGCATCGAACAACCATTCGGACAGACTCCTTG
AAATAGAGGAGGAAAAACTGGCGATCGAGCGAGAAAAGCTGCAGGTTATG
AAGGATGCACTGCTGGAGCTAAACGCATTTCACAAAGATATTGTTTATTT
GCTTAAGCATAACAATCAGTAGTGTAAATATTAAGTGTTATACGTAGAAG
TAGCGTGGTGTTACTTTTTCAGCAAAATATACAACTAAAACAGTGAATAT
TTAATGTAATATTGCTTCAACTTCAAATTAATCTAAATATATATATATAT
ATTGTAAAAAGCTAGATTTTGCATTGTTATGATCTTACAAATTAGTTTCT
TAAGTAAAAATAAATGCAATGAAATTATAAAAAAAAAAAAAAAAAA

LD20590.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1528 l(3)j2D3-RA 50..1528 1..1479 7395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12108187..12108808 857..1478 3110 100 Plus
chr3L 24539361 chr3L 12107517..12107923 325..731 2020 99.8 Plus
chr3L 24539361 chr3L 12106898..12107221 1..324 1590 99.4 Plus
chr3L 24539361 chr3L 12107995..12108124 730..859 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12117434..12118056 857..1479 3115 100 Plus
3L 28110227 3L 12116764..12117170 325..731 2035 100 Plus
3L 28110227 3L 12116136..12116459 1..324 1620 100 Plus
3L 28110227 3L 12117242..12117371 730..859 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12110534..12111156 857..1479 3115 100 Plus
3L 28103327 3L 12109864..12110270 325..731 2035 100 Plus
3L 28103327 3L 12109236..12109559 1..324 1620 100 Plus
3L 28103327 3L 12110342..12110471 730..859 650 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:59:11 has no hits.

LD20590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:59:48 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12106898..12107221 1..324 99 -> Plus
chr3L 12107517..12107923 325..731 99 -> Plus
chr3L 12107997..12108124 732..859 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:53 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 97..1272 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:09 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 97..1272 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:04:30 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 97..1272 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:59 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 97..1272 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:37 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 97..1272 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:14 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1478 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:09 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1478 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:04:30 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 36..1513 1..1478 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:59 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1478 1..1478 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:37 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 36..1513 1..1478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:48 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12116136..12116459 1..324 100 -> Plus
3L 12116764..12117170 325..731 100 -> Plus
3L 12117244..12117371 732..859 100 -> Plus
3L 12117437..12118055 860..1478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:48 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12116136..12116459 1..324 100 -> Plus
3L 12116764..12117170 325..731 100 -> Plus
3L 12117244..12117371 732..859 100 -> Plus
3L 12117437..12118055 860..1478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:48 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12116136..12116459 1..324 100 -> Plus
3L 12116764..12117170 325..731 100 -> Plus
3L 12117244..12117371 732..859 100 -> Plus
3L 12117437..12118055 860..1478 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:04:30 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109236..12109559 1..324 100 -> Plus
arm_3L 12109864..12110270 325..731 100 -> Plus
arm_3L 12110344..12110471 732..859 100 -> Plus
arm_3L 12110537..12111155 860..1478 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:38 Download gff for LD20590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12109236..12109559 1..324 100 -> Plus
3L 12109864..12110270 325..731 100 -> Plus
3L 12110344..12110471 732..859 100 -> Plus
3L 12110537..12111155 860..1478 100   Plus

LD20590.pep Sequence

Translation from 96 to 1271

> LD20590.pep
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*

LD20590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23586-PA 418 GF23586-PA 1..414 1..387 691 43.8 Plus
Dana\GF20046-PA 338 GF20046-PA 117..338 154..387 217 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15556-PA 385 GG15556-PA 1..385 1..391 1539 78.4 Plus
Dere\GG15557-PA 367 GG15557-PA 121..358 154..386 250 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14651-PA 410 GH14651-PA 182..406 151..388 321 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
vers-PA 391 CG6801-PA 1..391 1..391 2010 100 Plus
ssp-PA 368 CG17153-PA 121..361 154..388 270 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11636-PA 189 GI11636-PA 1..187 186..388 288 36.4 Plus
Dmoj\GI14577-PA 83 GI14577-PA 1..60 186..245 160 48.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15726-PA 268 GL15726-PA 57..267 149..391 457 45.5 Plus
Dper\GL15728-PA 391 GL15728-PA 140..391 151..390 410 40.2 Plus
Dper\GL22657-PA 209 GL22657-PA 16..124 147..253 181 34.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23779-PA 273 GA23779-PA 65..272 149..391 467 45.1 Plus
Dpse\GA23780-PA 378 GA23780-PA 127..378 151..390 412 40.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25324-PA 390 GM25324-PA 1..390 1..390 1845 92.1 Plus
Dsec\GM25325-PA 368 GM25325-PA 121..359 154..386 250 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14355-PA 260 GD14355-PA 1..259 1..259 1307 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11318-PA 342 GJ11318-PA 131..340 151..388 324 33.9 Plus
Dvir\GJ17087-PA 176 GJ17087-PA 1..170 186..383 241 31.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16965-PA 462 GK16965-PA 126..270 127..279 308 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21880-PA 383 GE21880-PA 1..383 1..391 1472 76.4 Plus
Dyak\GE21881-PA 368 GE21881-PA 121..359 154..386 224 28.1 Plus

LD20590.hyp Sequence

Translation from 96 to 1271

> LD20590.hyp
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*

LD20590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-PA 391 CG6801-PA 1..391 1..391 2010 100 Plus
ssp-PA 368 CG17153-PA 121..361 154..388 270 29.4 Plus