BDGP Sequence Production Resources |
Search the DGRC for LD20590
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 205 |
Well: | 90 |
Vector: | pBS SK- |
Associated Gene/Transcript | l(3)j2D3-RA |
Protein status: | LD20590.pep: gold |
Preliminary Size: | 1550 |
Sequenced Size: | 1496 |
Gene | Date | Evidence |
---|---|---|
CG6801 | 2001-01-01 | Release 2 assignment |
CG6801 | 2001-10-10 | Blastp of sequenced clone |
CG6801 | 2003-01-01 | Sim4 clustering to Release 3 |
l(3)j2D3 | 2008-04-29 | Release 5.5 accounting |
l(3)j2D3 | 2008-08-15 | Release 5.9 accounting |
l(3)j2D3 | 2008-12-18 | 5.12 accounting |
1496 bp (1496 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061293
> LD20590.complete GAACAGGAATTACAAAAGATATTTTTCCACCAATTATCAAAATAAAAACA CAACAATTCACGCTATCTAGCGCTGGACACAAAAGACCGCAACGTAATGC CGTCCAGAAATATTGACGATGCCGCCGGCGCCAAGGAGGTTCACCGAAGT ACAAGGAATTCACTGATCGGCCCGAAGAGCAAGCGAATCGCCCTAAACAG TCGCAATCGCAGTCTTGCTGCCGCCGAAAAGAAAACTCAGTCGCAGCTGT CATTCCCGCCAAAATCGGAGTACGAGAAGTTCTACGAGACCGTCTTCCTG GCGGAGGATTTGCAGCCGGAGGAAAATATAACACCAGAACGTCGTAAGCC AGGACCGCGCATGAAGAGCTCACTCCAAGCCCTGTTGAGCGATGAAGGAT CACCGACGGGACCACAGCGAACCGCCAAGATAAACGTTGCACAGAAAATG GTCGTTGAGCCAGCGATCCGAGCCAATGGCATCTCGCCATTGCCCAAGAA TGTTGGCAAGGAGGAAAAGTTTGAGGACTACTATACGAAAACGGAGCGAC ACGTTTGGAAAAAGGATGCGGAGAAGATGTTGCTGCAACTGTGGGCACAG CATTTGAAGGATTTTCGTGGAGAGTCCAAGAATGTGATCATCTACCGGCA AATGGCTAGGGAGATGAGTCAGTTTGGGCCCAGCCACACGGAGCTTAAAA CCAAAATGGACAATTTGTCGCGAAAGTATAGAATAGAAGCTGAGAGAGTT CGGGAAACTGGAGTGCCATCCAAGTGGGAGCACTTTCATAAGCTTCAAGC ACTTCTGATTGGCACGAAATCAGTTGATGTCTTCGAAGATATTACCGCCG AAAATCCAGCTCAAGCTTTGTTCAGCGATGAGGATTATGAGCCTGAGGAA TTGTCTTCATTAAAAGACGAGCCTATGGCCGGGGACGATGGGAACGTATT CGAAAGTGATATGGTTGCTAGCAAAGCCATGAAAAGAACGCGAACTCCCT CTCCCAGTATTCCGGAAATCCCGGAAGAAGACGAGGAGGAGGAGGAGGAG GAGGAGGATGATGACCACATGAAGGATCTCTCCCCATCGCCAATTTCAAA ATGTCAGACAAAACGGAAAGCATCGAACAACCATTCGGACAGACTCCTTG AAATAGAGGAGGAAAAACTGGCGATCGAGCGAGAAAAGCTGCAGGTTATG AAGGATGCACTGCTGGAGCTAAACGCATTTCACAAAGATATTGTTTATTT GCTTAAGCATAACAATCAGTAGTGTAAATATTAAGTGTTATACGTAGAAG TAGCGTGGTGTTACTTTTTCAGCAAAATATACAACTAAAACAGTGAATAT TTAATGTAATATTGCTTCAACTTCAAATTAATCTAAATATATATATATAT ATTGTAAAAAGCTAGATTTTGCATTGTTATGATCTTACAAATTAGTTTCT TAAGTAAAAATAAATGCAATGAAATTATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)j2D3-RA | 1528 | l(3)j2D3-RA | 50..1528 | 1..1479 | 7395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12108187..12108808 | 857..1478 | 3110 | 100 | Plus |
chr3L | 24539361 | chr3L | 12107517..12107923 | 325..731 | 2020 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 12106898..12107221 | 1..324 | 1590 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 12107995..12108124 | 730..859 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12117434..12118056 | 857..1479 | 3115 | 100 | Plus |
3L | 28110227 | 3L | 12116764..12117170 | 325..731 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 12116136..12116459 | 1..324 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 12117242..12117371 | 730..859 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12110534..12111156 | 857..1479 | 3115 | 100 | Plus |
3L | 28103327 | 3L | 12109864..12110270 | 325..731 | 2035 | 100 | Plus |
3L | 28103327 | 3L | 12109236..12109559 | 1..324 | 1620 | 100 | Plus |
3L | 28103327 | 3L | 12110342..12110471 | 730..859 | 650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12106898..12107221 | 1..324 | 99 | -> | Plus |
chr3L | 12107517..12107923 | 325..731 | 99 | -> | Plus |
chr3L | 12107997..12108124 | 732..859 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1176 | 97..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1176 | 97..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1176 | 97..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1176 | 97..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1176 | 97..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1478 | 1..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1478 | 1..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 36..1513 | 1..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 1..1478 | 1..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)j2D3-RA | 36..1513 | 1..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12116136..12116459 | 1..324 | 100 | -> | Plus |
3L | 12116764..12117170 | 325..731 | 100 | -> | Plus |
3L | 12117244..12117371 | 732..859 | 100 | -> | Plus |
3L | 12117437..12118055 | 860..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12116136..12116459 | 1..324 | 100 | -> | Plus |
3L | 12116764..12117170 | 325..731 | 100 | -> | Plus |
3L | 12117244..12117371 | 732..859 | 100 | -> | Plus |
3L | 12117437..12118055 | 860..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12116136..12116459 | 1..324 | 100 | -> | Plus |
3L | 12116764..12117170 | 325..731 | 100 | -> | Plus |
3L | 12117244..12117371 | 732..859 | 100 | -> | Plus |
3L | 12117437..12118055 | 860..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12109236..12109559 | 1..324 | 100 | -> | Plus |
arm_3L | 12109864..12110270 | 325..731 | 100 | -> | Plus |
arm_3L | 12110344..12110471 | 732..859 | 100 | -> | Plus |
arm_3L | 12110537..12111155 | 860..1478 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12109236..12109559 | 1..324 | 100 | -> | Plus |
3L | 12109864..12110270 | 325..731 | 100 | -> | Plus |
3L | 12110344..12110471 | 732..859 | 100 | -> | Plus |
3L | 12110537..12111155 | 860..1478 | 100 | Plus |
Translation from 96 to 1271
> LD20590.pep MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23586-PA | 418 | GF23586-PA | 1..414 | 1..387 | 691 | 43.8 | Plus |
Dana\GF20046-PA | 338 | GF20046-PA | 117..338 | 154..387 | 217 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15556-PA | 385 | GG15556-PA | 1..385 | 1..391 | 1539 | 78.4 | Plus |
Dere\GG15557-PA | 367 | GG15557-PA | 121..358 | 154..386 | 250 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14651-PA | 410 | GH14651-PA | 182..406 | 151..388 | 321 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vers-PA | 391 | CG6801-PA | 1..391 | 1..391 | 2010 | 100 | Plus |
ssp-PA | 368 | CG17153-PA | 121..361 | 154..388 | 270 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11636-PA | 189 | GI11636-PA | 1..187 | 186..388 | 288 | 36.4 | Plus |
Dmoj\GI14577-PA | 83 | GI14577-PA | 1..60 | 186..245 | 160 | 48.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15726-PA | 268 | GL15726-PA | 57..267 | 149..391 | 457 | 45.5 | Plus |
Dper\GL15728-PA | 391 | GL15728-PA | 140..391 | 151..390 | 410 | 40.2 | Plus |
Dper\GL22657-PA | 209 | GL22657-PA | 16..124 | 147..253 | 181 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23779-PA | 273 | GA23779-PA | 65..272 | 149..391 | 467 | 45.1 | Plus |
Dpse\GA23780-PA | 378 | GA23780-PA | 127..378 | 151..390 | 412 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25324-PA | 390 | GM25324-PA | 1..390 | 1..390 | 1845 | 92.1 | Plus |
Dsec\GM25325-PA | 368 | GM25325-PA | 121..359 | 154..386 | 250 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14355-PA | 260 | GD14355-PA | 1..259 | 1..259 | 1307 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11318-PA | 342 | GJ11318-PA | 131..340 | 151..388 | 324 | 33.9 | Plus |
Dvir\GJ17087-PA | 176 | GJ17087-PA | 1..170 | 186..383 | 241 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16965-PA | 462 | GK16965-PA | 126..270 | 127..279 | 308 | 44.8 | Plus |
Translation from 96 to 1271
> LD20590.hyp MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQ*