Clone LD20635 Report

Search the DGRC for LD20635

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:206
Well:35
Vector:pBS SK-
Associated Gene/TranscriptCG7747-RA
Protein status:LD20635.pep: gold
Preliminary Size:1628
Sequenced Size:1680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7747 2001-01-01 Release 2 assignment
CG7747 2001-10-10 Blastp of sequenced clone
CG7747 2003-01-01 Sim4 clustering to Release 3
CG7747 2008-04-29 Release 5.5 accounting
CG7747 2008-08-15 Release 5.9 accounting
CG7747 2008-12-18 5.12 accounting

Clone Sequence Records

LD20635.complete Sequence

1680 bp (1680 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061295

> LD20635.complete
AAACTATTTGTAGCTCTTACTTTATTGCAAATTTAATTTAAAAAAACAAA
CAGCCAAGATGGGTAAAAGGCAGCATCAAAAGGACAAAATGTACCTCACG
TACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAATCCTTGGA
GAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTGCTGCATTA
CGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCAATGTGTTC
GAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTGAACCCCAT
CACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAACTTCCACA
GGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGCCCTTCAGC
AAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTATACTGCTG
GGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAAGGATCTGG
TGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATACAAGATCCT
CAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATTAAGAAGAA
TCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAATCCAGCCA
GCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGCTGGAACAG
CTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACTTCGAAGCG
TACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGCGGTGGCGG
CCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAGAGGCGGCT
ATCATAGATGATGATTTGGTCAAGTACGAGCGGGTAAAAAAGAAGGGCTA
CGTTCGTTTAAATACGAACCTTGGCCCTCTCAACCTGGAGCTCTTCTGCG
ATCAAACTCCTCGAGCCTGCGATAACTTCATCAAGCATTGCGCCAATGGT
TACTACAATAATGTTATGTTTCACCGGTCCATAAGGAATTTTATTGTGCA
AGGTGGTGATCCCACTGGAAGTGGTTCTGGTGGCGAGTCCATTTGGGGCA
AGAAGTTTGAGGACGAGTTTAAGCCGAATCTTACGCACACGGGCCGAGGA
GTGCTATCAATGGCCAATTCGGGACCCAACACCAATGGCTCTCAGTTCTT
TATCACCTATCGCTCTTGCAAACATCTCGACGGCAAACACACCATCTTTG
GAAAGCTTGTCGGAGGATTAGACACTCTTCAAAAGATGGAAAATATCGAG
GTGGATAACAAGGACAGACCAATTGAGGACATCATCATTGAGTCCTCACA
GGTCTTTGTGAATCCATTTGCCGAGGCAGCCGAACAGTTGGCCAAGGAGC
GCGAGGAGGAGGCGGCCGGCAAGGAGGAGATTGTCAAGAAGGAGGAGCAG
CAAAAGCGCATGAAGGAGCCACTGAAGGTGTACAGAGAGGGCGTAGGCAA
GTACCTGAAACTTCAGACAGTGGCCAAAAAGCCAGAGGCGCCACTTACAT
CCGCTCAAGCAGCCAAGAAGAAGAAACTGGCGAATGGTTTTGGAGATTTC
TCCAGTTGGTAACCCATTGTTTTCCAAAAATAAATATTTAAAAGACCGTT
TTAGAAGTAAAAAAAAAAAAAAAAAAAAAA

LD20635.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1701 CG7747-RA 40..1701 1..1662 8310 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12180340..12181296 1047..91 4605 98.7 Minus
chr2R 21145070 chr2R 12179617..12180077 1658..1198 2260 99.3 Minus
chr2R 21145070 chr2R 12180136..12180287 1197..1046 760 100 Minus
chr2R 21145070 chr2R 12181353..12181445 93..1 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16292987..16293943 1047..91 4785 100 Minus
2R 25286936 2R 16292260..16292724 1662..1198 2325 100 Minus
2R 25286936 2R 16292783..16292934 1197..1046 760 100 Minus
2R 25286936 2R 16294000..16294092 93..1 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16294186..16295142 1047..91 4785 100 Minus
2R 25260384 2R 16293459..16293923 1662..1198 2325 100 Minus
2R 25260384 2R 16293982..16294133 1197..1046 760 100 Minus
2R 25260384 2R 16295199..16295291 93..1 465 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:27:54 has no hits.

LD20635.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:28:40 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12179617..12180077 1198..1658 99 <- Minus
chr2R 12180136..12180287 1046..1197 100 <- Minus
chr2R 12180342..12181296 91..1045 98 <- Minus
chr2R 12181356..12181445 1..90 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:56 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 59..1612 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:10 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 59..1612 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:55 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 59..1612 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:00 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 59..1612 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:22 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 59..1612 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:16 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 35..1692 1..1658 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:10 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 35..1692 1..1658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:55 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 39..1696 1..1658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:00 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 35..1692 1..1658 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:22 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 39..1696 1..1658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:40 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16292264..16292724 1198..1658 100 <- Minus
2R 16292783..16292934 1046..1197 100 <- Minus
2R 16292989..16293943 91..1045 100 <- Minus
2R 16294003..16294092 1..90 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:40 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16292264..16292724 1198..1658 100 <- Minus
2R 16292783..16292934 1046..1197 100 <- Minus
2R 16292989..16293943 91..1045 100 <- Minus
2R 16294003..16294092 1..90 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:40 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16292264..16292724 1198..1658 100 <- Minus
2R 16292783..16292934 1046..1197 100 <- Minus
2R 16292989..16293943 91..1045 100 <- Minus
2R 16294003..16294092 1..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:55 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12181508..12181597 1..90 100   Minus
arm_2R 12180288..12180439 1046..1197 100 <- Minus
arm_2R 12179769..12180229 1198..1658 100 <- Minus
arm_2R 12180494..12181448 91..1045 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:40 Download gff for LD20635.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16293463..16293923 1198..1658 100 <- Minus
2R 16293982..16294133 1046..1197 100 <- Minus
2R 16294188..16295142 91..1045 100 <- Minus
2R 16295202..16295291 1..90 100   Minus

LD20635.pep Sequence

Translation from 58 to 1611

> LD20635.pep
MGKRQHQKDKMYLTYTEWSELYGGKKVESLENDHVKFKRLPFEHCCITMA
PYEMPYCDLQGNVFEYEAILKFLKTFKVNPITGQKMDSKSLVKLNFHRNA
NDEYHCPALFKPFSKNSHIVAVATTGNVYCWEAIDQLNIKTKNWKDLVDD
TPFQRKDIITIQDPQKLEKYDISTFYHIKKNLRVLTEEEQQERKNPASGR
IKTMNLETKETLEQLQQDYQPAEEEASTSKRTADKFNAAHYSTGAVAASF
TSTAMVPVSQIEAAIIDDDLVKYERVKKKGYVRLNTNLGPLNLELFCDQT
PRACDNFIKHCANGYYNNVMFHRSIRNFIVQGGDPTGSGSGGESIWGKKF
EDEFKPNLTHTGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTIFGKL
VGGLDTLQKMENIEVDNKDRPIEDIIIESSQVFVNPFAEAAEQLAKEREE
EAAGKEEIVKKEEQQKRMKEPLKVYREGVGKYLKLQTVAKKPEAPLTSAQ
AAKKKKLANGFGDFSSW*

LD20635.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11272-PA 517 GF11272-PA 1..517 1..517 2661 94 Plus
Dana\GF25039-PA 175 GF25039-PA 21..172 281..432 442 50.7 Plus
Dana\GF13766-PA 161 GF13766-PA 3..160 282..438 440 50.6 Plus
Dana\GF25290-PA 496 GF25290-PA 13..171 280..437 411 47.2 Plus
Dana\GF13003-PA 205 GF13003-PA 73..193 316..436 318 49.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22278-PA 517 GG22278-PA 1..517 1..517 2767 98.5 Plus
Dere\GG14657-PA 176 GG14657-PA 22..173 281..432 442 50.7 Plus
Dere\GG24170-PA 161 GG24170-PA 3..160 282..438 436 50 Plus
Dere\GG15530-PA 502 GG15530-PA 13..178 280..444 415 45.8 Plus
Dere\GG21776-PA 205 GG21776-PA 9..195 258..440 343 41.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19751-PA 513 GH19751-PA 1..513 1..517 2368 85.2 Plus
Dgri\GH21768-PA 173 GH21768-PA 19..170 281..432 437 49.3 Plus
Dgri\GH21257-PA 161 GH21257-PA 3..160 282..438 426 49.4 Plus
Dgri\GH15083-PA 499 GH15083-PA 13..171 280..437 399 46 Plus
Dgri\GH20332-PA 205 GH20332-PA 12..197 261..438 333 41.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 517 CG7747-PA 1..517 1..517 2732 100 Plus
CG11777-PA 161 CG11777-PA 3..160 282..438 438 50.6 Plus
Cypl-PA 176 CG13892-PA 22..173 281..432 435 50.7 Plus
CG10907-PA 502 CG10907-PA 13..250 280..506 416 37.9 Plus
CG3511-PB 637 CG3511-PB 484..632 282..429 382 49 Plus
CG3511-PA 637 CG3511-PA 484..632 282..429 382 49 Plus
CG5808-PA 653 CG5808-PA 3..235 282..496 334 34.9 Plus
CG2852-PD 205 CG2852-PD 10..195 258..440 329 40.1 Plus
CG2852-PA 205 CG2852-PA 10..195 258..440 329 40.1 Plus
Moca-cyp-PA 970 CG1866-PA 26..230 288..473 317 35.9 Plus
CG17266-PB 183 CG17266-PB 28..171 286..421 300 43.4 Plus
CG17266-PA 183 CG17266-PA 28..171 286..421 300 43.4 Plus
CG7768-PB 164 CG7768-PB 17..144 288..412 294 51.9 Plus
CG7768-PA 164 CG7768-PA 17..144 288..412 294 51.9 Plus
Cyp1-PA 227 CG9916-PA 77..207 285..412 290 49.2 Plus
ninaA-PA 237 CG3966-PA 40..187 288..429 284 41.2 Plus
cyp33-PA 300 CG4886-PA 145..295 282..429 273 43.8 Plus
CG8336-PD 383 CG8336-PD 29..177 289..427 221 37.7 Plus
CG8336-PC 383 CG8336-PC 29..177 289..427 221 37.7 Plus
CG8336-PA 383 CG8336-PA 29..177 289..427 221 37.7 Plus
CG8336-PB 383 CG8336-PB 29..177 289..427 221 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20287-PA 517 GI20287-PA 1..517 1..517 2424 85.7 Plus
Dmoj\GI22699-PA 173 GI22699-PA 19..170 281..432 435 49.3 Plus
Dmoj\GI19335-PA 180 GI19335-PA 22..179 282..438 434 50 Plus
Dmoj\GI13730-PA 507 GI13730-PA 13..171 280..437 400 46.6 Plus
Dmoj\moj29-PA 205 GI20003-PA 12..193 261..436 329 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11352-PA 517 GL11352-PA 1..517 1..517 2534 88.2 Plus
Dper\GL22598-PA 175 GL22598-PA 21..172 281..432 445 50.7 Plus
Dper\GL17294-PA 161 GL17294-PA 3..160 282..438 422 48.7 Plus
Dper\GL20720-PA 503 GL20720-PA 13..173 280..439 421 47.2 Plus
Dper\GL17482-PA 205 GL17482-PA 10..195 258..440 330 40.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20560-PA 517 GA20560-PA 1..517 1..517 2534 88.2 Plus
Dpse\GA12606-PA 175 GA12606-PA 21..172 281..432 445 50.7 Plus
Dpse\GA11192-PA 162 GA11192-PA 4..161 282..438 426 49.4 Plus
Dpse\GA10630-PA 503 GA10630-PA 13..173 280..439 421 47.2 Plus
Dpse\GA15486-PA 205 GA15486-PA 10..195 258..440 330 40.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20066-PA 517 GM20066-PA 1..517 1..517 2794 99.6 Plus
Dsec\GM14273-PA 176 GM14273-PA 22..173 281..432 442 50.7 Plus
Dsec\GM21220-PA 161 GM21220-PA 3..160 282..438 440 50.6 Plus
Dsec\GM25298-PA 502 GM25298-PA 13..178 280..444 416 45.8 Plus
Dsec\GM15627-PA 205 GM15627-PA 43..195 289..440 340 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15224-PA 240 GD15224-PA 1..240 1..240 1307 99.6 Plus
Dsim\GD25702-PA 176 GD25702-PA 22..173 281..432 442 50.7 Plus
Dsim\GD10743-PA 161 GD10743-PA 3..160 282..438 440 50.6 Plus
Dsim\GD14329-PA 502 GD14329-PA 13..178 280..444 416 45.8 Plus
Dsim\GD25116-PA 203 GD25116-PA 41..193 289..440 340 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22016-PA 517 GJ22016-PA 1..517 1..517 2407 85.5 Plus
Dvir\GJ15535-PA 281 GJ15535-PA 1..281 238..517 1263 83.3 Plus
Dvir\GJ23427-PA 173 GJ23427-PA 19..170 281..432 434 49.3 Plus
Dvir\GJ22213-PA 182 GJ22213-PA 24..181 282..438 427 49.4 Plus
Dvir\GJ14076-PA 498 GJ14076-PA 13..171 280..437 404 46.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20914-PA 520 GK20914-PA 1..520 1..517 2402 85.1 Plus
Dwil\GK20536-PA 174 GK20536-PA 20..171 281..432 443 50.7 Plus
Dwil\GK18005-PA 171 GK18005-PA 13..170 282..438 433 50 Plus
Dwil\GK24526-PA 508 GK24526-PA 13..171 280..437 412 47.2 Plus
Dwil\GK21428-PA 204 GK21428-PA 13..192 263..436 323 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14073-PA 517 GE14073-PA 1..517 1..517 2740 97.7 Plus
Dyak\GE21017-PA 176 GE21017-PA 22..173 281..432 443 50.7 Plus
Dyak\GE19364-PA 161 GE19364-PA 3..160 282..438 440 50.6 Plus
Dyak\GE21848-PA 502 GE21848-PA 13..171 280..437 419 47.8 Plus
Dyak\GE11851-PA 205 GE11851-PA 7..195 256..440 344 40.7 Plus

LD20635.hyp Sequence

Translation from 58 to 1611

> LD20635.hyp
MGKRQHQKDKMYLTYTEWSELYGGKKVESLENDHVKFKRLPFEHCCITMA
PYEMPYCDLQGNVFEYEAILKFLKTFKVNPITGQKMDSKSLVKLNFHRNA
NDEYHCPALFKPFSKNSHIVAVATTGNVYCWEAIDQLNIKTKNWKDLVDD
TPFQRKDIITIQDPQKLEKYDISTFYHIKKNLRVLTEEEQQERKNPASGR
IKTMNLETKETLEQLQQDYQPAEEEASTSKRTADKFNAAHYSTGAVAASF
TSTAMVPVSQIEAAIIDDDLVKYERVKKKGYVRLNTNLGPLNLELFCDQT
PRACDNFIKHCANGYYNNVMFHRSIRNFIVQGGDPTGSGSGGESIWGKKF
EDEFKPNLTHTGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTIFGKL
VGGLDTLQKMENIEVDNKDRPIEDIIIESSQVFVNPFAEAAEQLAKEREE
EAAGKEEIVKKEEQQKRMKEPLKVYREGVGKYLKLQTVAKKPEAPLTSAQ
AAKKKKLANGFGDFSSW*

LD20635.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 517 CG7747-PA 1..517 1..517 2732 100 Plus
CG11777-PA 161 CG11777-PA 3..160 282..438 438 50.6 Plus
Cypl-PA 176 CG13892-PA 22..173 281..432 435 50.7 Plus
CG10907-PA 502 CG10907-PA 13..250 280..506 416 37.9 Plus
CG3511-PB 637 CG3511-PB 484..632 282..429 382 49 Plus