BDGP Sequence Production Resources |
Search the DGRC for LD20718
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 207 |
Well: | 18 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4004-RB |
Protein status: | LD20718.pep: gold |
Preliminary Size: | 1455 |
Sequenced Size: | 1403 |
Gene | Date | Evidence |
---|---|---|
CG4004 | 2001-10-10 | Blastp of sequenced clone |
CG4004 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4004 | 2008-04-29 | Release 5.5 accounting |
CG4004 | 2008-08-15 | Release 5.9 accounting |
CG4004 | 2008-12-18 | 5.12 accounting |
1403 bp (1403 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061296
> LD20718.complete TCGCACACGCACACGGCGATCGATTTTTGGAAGAAATTCCTCGGGTTGTA CCGTTCGATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGTATCGCGATC GCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTGCTACGCACG ACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGATCAACAATTT TCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATAGTGGGAACA CATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTTCTCTATGAA CTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGCCGATCGGGA TTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATAAAACGATAA CATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGCTTTATTGTG AAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATATGCAGCAATT GGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGG ATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCC GAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATGA TTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGC AGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCG GATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGA CACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGA ATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAG CATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGC CAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGA TCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTTTCGTTCGAG ACCCAATTTAGTATGGGTCATAAATAAGTGAAACTAAACTAAAACTCATT TCGCATATGAAAATGCGATTGAAAACGTATGAACGACAATTTAATTATTT CAAATTCTATCTTTAACGATCATTTCATTTGGCATTACGGTTTAAAAAAA AAGCATAATATTGAACGACAAAATGCACTATGTCCGTTATAGCAATAATT AATATTGCATAAGAAACAAAAATGTAATTAAGTTAAGCTGAAAACTCGAC AATATTTTTAAGTTTTCGTAGTTTAAGTGGAAAAATAGATAGAACCGAAA TGAATGATATTTTTAGCCGCCTGCAACGCTAAGCAAAAAAAAAAAAAAAA AAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 12636269..12636778 | 1..510 | 99 | -> | Plus |
chrX | 12637772..12638645 | 511..1384 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1020 | 58..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1020 | 58..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1020 | 58..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1020 | 58..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1020 | 58..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1384 | 1..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1384 | 1..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1384 | 1..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1384 | 1..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4004-RB | 1..1384 | 1..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12745358..12745867 | 1..510 | 100 | -> | Plus |
X | 12746869..12747742 | 511..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12745358..12745867 | 1..510 | 100 | -> | Plus |
X | 12746869..12747742 | 511..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12745358..12745867 | 1..510 | 100 | -> | Plus |
X | 12746869..12747742 | 511..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 12639391..12639900 | 1..510 | 100 | -> | Plus |
arm_X | 12640902..12641775 | 511..1384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12753456..12753965 | 1..510 | 100 | -> | Plus |
X | 12754967..12755840 | 511..1384 | 100 | Plus |
Translation from 0 to 1076
> LD20718.hyp SHTHTAIDFWKKFLGLYRSMPELWLVRSKLYRDRQLKLESYSRLLELLRT TDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKPTLWYFKELDFLYE LETGELQLEGIVAADRDLVRNSKVLQNESNKTITFGAQLAEQEVSMSFIV KREIEVDENITEDMQQLETEDVDIMSDAFPHEEDMLRLDAVGDGDVEPEP EPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGESQTS DKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRERDRK HESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVLVYGRMNRLSFE TQFSMGHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4004-PB | 339 | CG4004-PB | 1..339 | 20..358 | 1762 | 100 | Plus |
CG4004-PE | 319 | CG4004-PE | 14..319 | 8..358 | 1137 | 65.2 | Plus |
CG4004-PD | 319 | CG4004-PD | 14..319 | 8..358 | 1137 | 65.2 | Plus |
CG4004-PA | 319 | CG4004-PA | 14..319 | 8..358 | 1137 | 65.2 | Plus |
CG4004-PC | 304 | CG4004-PC | 113..304 | 167..358 | 1002 | 98.4 | Plus |
Translation from 57 to 1076
> LD20718.pep MPELWLVRSKLYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRT SYRRELRKVLDSGNTYKPTLWYFKELDFLYELETGELQLEGIVAADRDLV RNSKVLQNESNKTITFGAQLAEQEVSMSFIVKREIEVDENITEDMQQLET EDVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDNDPELDNMDDHVDDYR NNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRIRNRRRRSSNDTD YVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKRMASH FRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21386-PA | 511 | GF21386-PA | 186..510 | 1..337 | 600 | 48.7 | Plus |
Dana\GF25258-PA | 238 | GF25258-PA | 19..100 | 1..79 | 165 | 43.9 | Plus |
Dana\GF21386-PA | 511 | GF21386-PA | 65..140 | 4..79 | 156 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17737-PA | 534 | GG17737-PA | 198..534 | 1..339 | 1020 | 63.5 | Plus |
Dere\GG17737-PA | 534 | GG17737-PA | 29..104 | 4..79 | 171 | 43.4 | Plus |
Dere\GG14454-PA | 342 | GG14454-PA | 33..114 | 1..79 | 149 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12134-PA | 398 | GH12134-PA | 22..179 | 1..178 | 313 | 43.2 | Plus |
Dgri\GH12134-PA | 398 | GH12134-PA | 338..386 | 286..334 | 217 | 79.6 | Plus |
Dgri\GH17048-PA | 212 | GH17048-PA | 20..105 | 1..79 | 185 | 43 | Plus |
Dgri\GH12132-PA | 183 | GH12132-PA | 27..102 | 4..79 | 163 | 40.8 | Plus |
Dgri\GH14980-PA | 373 | GH14980-PA | 37..172 | 1..143 | 158 | 30.1 | Plus |
Dgri\GH16644-PA | 261 | GH16644-PA | 19..106 | 1..85 | 149 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4004-PB | 339 | CG4004-PB | 1..339 | 1..339 | 1762 | 100 | Plus |
CG4004-PE | 319 | CG4004-PE | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PD | 319 | CG4004-PD | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PA | 319 | CG4004-PA | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PC | 304 | CG4004-PC | 113..304 | 148..339 | 1002 | 98.4 | Plus |
CG8281-PA | 348 | CG8281-PA | 33..118 | 1..83 | 153 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15912-PA | 455 | GI15912-PA | 133..439 | 4..334 | 474 | 41.1 | Plus |
Dmoj\GI12053-PA | 234 | GI12053-PA | 20..101 | 1..79 | 179 | 42.7 | Plus |
Dmoj\GI15912-PA | 455 | GI15912-PA | 26..101 | 4..79 | 165 | 43.4 | Plus |
Dmoj\GI13142-PA | 361 | GI13142-PA | 39..120 | 1..79 | 149 | 37.8 | Plus |
Dmoj\GI11601-PA | 248 | GI11601-PA | 19..99 | 1..79 | 146 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13143-PA | 543 | GL13143-PA | 198..532 | 1..334 | 592 | 41.7 | Plus |
Dper\GL13143-PA | 543 | GL13143-PA | 58..133 | 4..79 | 160 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17842-PA | 543 | GA17842-PA | 198..532 | 1..334 | 593 | 41.7 | Plus |
Dpse\GA23414-PA | 292 | GA23414-PA | 19..100 | 1..79 | 158 | 40.2 | Plus |
Dpse\GA17842-PA | 543 | GA17842-PA | 58..133 | 4..79 | 156 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11582-PA | 468 | GM11582-PA | 140..468 | 1..339 | 1374 | 80.4 | Plus |
Dsec\GM11582-PA | 468 | GM11582-PA | 29..104 | 4..79 | 161 | 43.4 | Plus |
Dsec\GM25005-PA | 348 | GM25005-PA | 33..114 | 1..79 | 150 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24799-PA | 148 | GD24799-PA | 29..104 | 4..79 | 158 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16819-PA | 495 | GJ16819-PA | 432..479 | 287..334 | 222 | 83.3 | Plus |
Dvir\GJ13325-PA | 258 | GJ13325-PA | 20..105 | 1..79 | 188 | 43 | Plus |
Dvir\GJ16819-PA | 495 | GJ16819-PA | 26..101 | 4..79 | 163 | 42.1 | Plus |
Dvir\GJ11280-PA | 271 | GJ11280-PA | 19..99 | 1..79 | 155 | 42.7 | Plus |
Dvir\GJ13890-PA | 346 | GJ13890-PA | 35..116 | 1..79 | 150 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25603-PA | 258 | GK25603-PA | 189..254 | 250..334 | 223 | 61.2 | Plus |
Dwil\GK18054-PA | 379 | GK18054-PA | 40..121 | 1..79 | 150 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17027-PA | 498 | GE17027-PA | 140..498 | 1..339 | 1002 | 65.8 | Plus |
Dyak\GE17027-PA | 498 | GE17027-PA | 29..104 | 4..79 | 154 | 39.5 | Plus |
Dyak\GE21643-PA | 342 | GE21643-PA | 33..114 | 1..79 | 149 | 39 | Plus |