Clone LD20718 Report

Search the DGRC for LD20718

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:207
Well:18
Vector:pBS SK-
Associated Gene/TranscriptCG4004-RB
Protein status:LD20718.pep: gold
Preliminary Size:1455
Sequenced Size:1403

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4004 2001-10-10 Blastp of sequenced clone
CG4004 2003-01-01 Sim4 clustering to Release 3
CG4004 2008-04-29 Release 5.5 accounting
CG4004 2008-08-15 Release 5.9 accounting
CG4004 2008-12-18 5.12 accounting

Clone Sequence Records

LD20718.complete Sequence

1403 bp (1403 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061296

> LD20718.complete
TCGCACACGCACACGGCGATCGATTTTTGGAAGAAATTCCTCGGGTTGTA
CCGTTCGATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGTATCGCGATC
GCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTGCTACGCACG
ACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGATCAACAATTT
TCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATAGTGGGAACA
CATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTTCTCTATGAA
CTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGCCGATCGGGA
TTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATAAAACGATAA
CATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGCTTTATTGTG
AAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATATGCAGCAATT
GGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGG
ATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCC
GAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATGA
TTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGC
AGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCG
GATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGA
CACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGA
ATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAG
CATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGC
CAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGA
TCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTTTCGTTCGAG
ACCCAATTTAGTATGGGTCATAAATAAGTGAAACTAAACTAAAACTCATT
TCGCATATGAAAATGCGATTGAAAACGTATGAACGACAATTTAATTATTT
CAAATTCTATCTTTAACGATCATTTCATTTGGCATTACGGTTTAAAAAAA
AAGCATAATATTGAACGACAAAATGCACTATGTCCGTTATAGCAATAATT
AATATTGCATAAGAAACAAAAATGTAATTAAGTTAAGCTGAAAACTCGAC
AATATTTTTAAGTTTTCGTAGTTTAAGTGGAAAAATAGATAGAACCGAAA
TGAATGATATTTTTAGCCGCCTGCAACGCTAAGCAAAAAAAAAAAAAAAA
AAA

LD20718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004.b 2570 CG4004.b 21..1423 1..1403 6985 99.8 Plus
CG4004-RB 1539 CG4004-RB 21..1423 1..1403 6985 99.8 Plus
CG4004.c 1788 CG4004.c 21..1423 1..1403 6985 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12637772..12638645 511..1384 4280 99.3 Plus
chrX 22417052 chrX 12636269..12636779 1..511 2480 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:07:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746869..12747761 511..1403 4435 99.8 Plus
X 23542271 X 12745358..12745868 1..511 2555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12754967..12755859 511..1403 4435 99.7 Plus
X 23527363 X 12753456..12753966 1..511 2555 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:28:00 has no hits.

LD20718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:28:44 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12636269..12636778 1..510 99 -> Plus
chrX 12637772..12638645 511..1384 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:54:58 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 58..1077 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:50 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 58..1077 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:03 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 58..1077 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:39 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 58..1077 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:28 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1020 58..1077 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:48 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1384 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:49 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1384 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:03 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1384 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:39 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1384 1..1384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:28 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RB 1..1384 1..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:44 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
X 12745358..12745867 1..510 100 -> Plus
X 12746869..12747742 511..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:44 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
X 12745358..12745867 1..510 100 -> Plus
X 12746869..12747742 511..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:28:44 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
X 12745358..12745867 1..510 100 -> Plus
X 12746869..12747742 511..1384 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:03 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12639391..12639900 1..510 100 -> Plus
arm_X 12640902..12641775 511..1384 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:50:16 Download gff for LD20718.complete
Subject Subject Range Query Range Percent Splice Strand
X 12753456..12753965 1..510 100 -> Plus
X 12754967..12755840 511..1384 100   Plus

LD20718.hyp Sequence

Translation from 0 to 1076

> LD20718.hyp
SHTHTAIDFWKKFLGLYRSMPELWLVRSKLYRDRQLKLESYSRLLELLRT
TDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKPTLWYFKELDFLYE
LETGELQLEGIVAADRDLVRNSKVLQNESNKTITFGAQLAEQEVSMSFIV
KREIEVDENITEDMQQLETEDVDIMSDAFPHEEDMLRLDAVGDGDVEPEP
EPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGESQTS
DKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRERDRK
HESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVLVYGRMNRLSFE
TQFSMGHK*

LD20718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PB 339 CG4004-PB 1..339 20..358 1762 100 Plus
CG4004-PE 319 CG4004-PE 14..319 8..358 1137 65.2 Plus
CG4004-PD 319 CG4004-PD 14..319 8..358 1137 65.2 Plus
CG4004-PA 319 CG4004-PA 14..319 8..358 1137 65.2 Plus
CG4004-PC 304 CG4004-PC 113..304 167..358 1002 98.4 Plus

LD20718.pep Sequence

Translation from 57 to 1076

> LD20718.pep
MPELWLVRSKLYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRT
SYRRELRKVLDSGNTYKPTLWYFKELDFLYELETGELQLEGIVAADRDLV
RNSKVLQNESNKTITFGAQLAEQEVSMSFIVKREIEVDENITEDMQQLET
EDVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDNDPELDNMDDHVDDYR
NNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRIRNRRRRSSNDTD
YVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKRMASH
FRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHK*

LD20718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21386-PA 511 GF21386-PA 186..510 1..337 600 48.7 Plus
Dana\GF25258-PA 238 GF25258-PA 19..100 1..79 165 43.9 Plus
Dana\GF21386-PA 511 GF21386-PA 65..140 4..79 156 42.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17737-PA 534 GG17737-PA 198..534 1..339 1020 63.5 Plus
Dere\GG17737-PA 534 GG17737-PA 29..104 4..79 171 43.4 Plus
Dere\GG14454-PA 342 GG14454-PA 33..114 1..79 149 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12134-PA 398 GH12134-PA 22..179 1..178 313 43.2 Plus
Dgri\GH12134-PA 398 GH12134-PA 338..386 286..334 217 79.6 Plus
Dgri\GH17048-PA 212 GH17048-PA 20..105 1..79 185 43 Plus
Dgri\GH12132-PA 183 GH12132-PA 27..102 4..79 163 40.8 Plus
Dgri\GH14980-PA 373 GH14980-PA 37..172 1..143 158 30.1 Plus
Dgri\GH16644-PA 261 GH16644-PA 19..106 1..85 149 38.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PB 339 CG4004-PB 1..339 1..339 1762 100 Plus
CG4004-PE 319 CG4004-PE 29..319 4..339 1123 67.6 Plus
CG4004-PD 319 CG4004-PD 29..319 4..339 1123 67.6 Plus
CG4004-PA 319 CG4004-PA 29..319 4..339 1123 67.6 Plus
CG4004-PC 304 CG4004-PC 113..304 148..339 1002 98.4 Plus
CG8281-PA 348 CG8281-PA 33..118 1..83 153 38.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15912-PA 455 GI15912-PA 133..439 4..334 474 41.1 Plus
Dmoj\GI12053-PA 234 GI12053-PA 20..101 1..79 179 42.7 Plus
Dmoj\GI15912-PA 455 GI15912-PA 26..101 4..79 165 43.4 Plus
Dmoj\GI13142-PA 361 GI13142-PA 39..120 1..79 149 37.8 Plus
Dmoj\GI11601-PA 248 GI11601-PA 19..99 1..79 146 39.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13143-PA 543 GL13143-PA 198..532 1..334 592 41.7 Plus
Dper\GL13143-PA 543 GL13143-PA 58..133 4..79 160 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17842-PA 543 GA17842-PA 198..532 1..334 593 41.7 Plus
Dpse\GA23414-PA 292 GA23414-PA 19..100 1..79 158 40.2 Plus
Dpse\GA17842-PA 543 GA17842-PA 58..133 4..79 156 40.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11582-PA 468 GM11582-PA 140..468 1..339 1374 80.4 Plus
Dsec\GM11582-PA 468 GM11582-PA 29..104 4..79 161 43.4 Plus
Dsec\GM25005-PA 348 GM25005-PA 33..114 1..79 150 39 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24799-PA 148 GD24799-PA 29..104 4..79 158 43.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16819-PA 495 GJ16819-PA 432..479 287..334 222 83.3 Plus
Dvir\GJ13325-PA 258 GJ13325-PA 20..105 1..79 188 43 Plus
Dvir\GJ16819-PA 495 GJ16819-PA 26..101 4..79 163 42.1 Plus
Dvir\GJ11280-PA 271 GJ11280-PA 19..99 1..79 155 42.7 Plus
Dvir\GJ13890-PA 346 GJ13890-PA 35..116 1..79 150 37.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25603-PA 258 GK25603-PA 189..254 250..334 223 61.2 Plus
Dwil\GK18054-PA 379 GK18054-PA 40..121 1..79 150 37.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17027-PA 498 GE17027-PA 140..498 1..339 1002 65.8 Plus
Dyak\GE17027-PA 498 GE17027-PA 29..104 4..79 154 39.5 Plus
Dyak\GE21643-PA 342 GE21643-PA 33..114 1..79 149 39 Plus