Clone LD20793 Report

Search the DGRC for LD20793

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:207
Well:93
Vector:pBS SK-
Associated Gene/TranscriptPeritrophin-A-RA
Protein status:LD20793.pep: gold
Preliminary Size:1351
Sequenced Size:1230

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17058 2001-01-01 Release 2 assignment
CG17058 2001-11-29 Blastp of sequenced clone
CG17058 2003-01-01 Sim4 clustering to Release 3
Peritrophin-A 2008-04-29 Release 5.5 accounting
Peritrophin-A 2008-08-15 Release 5.9 accounting
Peritrophin-A 2008-12-18 5.12 accounting

Clone Sequence Records

LD20793.complete Sequence

1230 bp (1230 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069467

> LD20793.complete
TTAAAACGTACAATCTTGGAGCGGAAGTTTCAAGTTTCTCCATTCCACTT
TTTGCGCGCATTTGAATATATATATATTTTTTTTACGGCACCAAACATGC
AGCGATTCCAAGTGTGCAGCGTCCTGATCCTGGCCTGGATTGCCTGTGGA
CATGCCCTGGCCGTGGGATCCCCGGAGTGCCCCGAGAAGTACGGCGTGCA
GGCGTACGCCCACACGGAGAACTGCGACCAGTTCTTCCTCTGCACCAACG
GCACCCTGACCCTGGAGACCTGCGAGAACGGACTGCTCTTCGATGGCAAG
GGCGCGGTGCACAACCACTGCAACTACAACTGGGCGGTGGACTGCAAGGG
CCGCCAGTGGGATCCCACTCCCATTTCCACGCCGGCCTGCGAGTACCAGT
TCGGTCTGTACGCTGTCTCCAAGGACTGCTCCACCACCTACATCAAGTGC
GCCCACGGTGAGCCGCACGAGCAGGACTGCGACGCCGGGTTGGCCTACGA
CGAAAGGATCCATGGCTGCAACTGGCCGGATCAGCTGCTGGAGCACTGCA
ATCCCGAGGCGGTCGTTGGCTTCAAGTGCCCCACCAAGGTGGACCCCAAC
TCGGTGGCCGCTCGCTTCTGGCCCTTCCCCCGGTTCCCCGTCGCCGGCGA
CTGCCACCGCCTGATCACTTGCGTGGAGGGCCATCCGCGCCTGATCAGCT
GCGGCGAGGACAAGGTCTTCGACGAGCACACGCTGACCTGCGAGGACCCG
GAGTACGCCAGCGGCAGCTGTGCCAACTACGGCAAGTAGGGATCGCCGAG
CGATCTGTACATGCACACGAACAAACAAACTGCAACAGTGCAATCTCGAT
AATGTGAACGTTCAAATTAAAGGAGATACATATGTACATATGTATGTACT
TGCTGGCTGCAAATTTGGAGTTATGTTGTTTTGCAGACAACCCCCCCCTC
CTAGGTTTACACTGGTTCGCTGCTTCGAGTGCGCACTGTAGGCTCCGACT
AACCAACTACTTTCGTCCCTTCATCTCCGCACCTTCGCTGCACTGTAAAA
AATGTCCTAGCCCAGTTAGCTTGTTAACCTTTTTGCTTTCTAACCAACCA
ACCGTCTGTATCTTGCTCTTCTTTCTGTATTATTAACTTGTTTTGTTGTT
TGGTCTCTTTTGTATATGAATCGCAATAAAGTTAATTTTATTTATTGTAC
ATTACATCAAAAAAAAAAAAAAAAAAAAAA

LD20793.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RA 1390 Peritrophin-A-RA 36..1245 1..1210 6050 100 Plus
Peritrophin-A-RB 1490 Peritrophin-A-RB 222..1345 87..1210 5620 100 Plus
Peritrophin-A-RB 1490 Peritrophin-A-RB 26..113 1..88 440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20113121..20113770 559..1208 3235 99.8 Plus
chrX 22417052 chrX 20112477..20112693 148..364 1085 100 Plus
chrX 22417052 chrX 20112765..20112959 365..559 945 99 Plus
chrX 22417052 chrX 20110255..20110342 1..88 440 100 Plus
chrX 22417052 chrX 20110451..20110513 87..149 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20247548..20248199 559..1210 3260 100 Plus
X 23542271 X 20246904..20247120 148..364 1085 100 Plus
X 23542271 X 20247192..20247386 365..559 975 100 Plus
X 23542271 X 20244677..20244764 1..88 440 100 Plus
X 23542271 X 20244873..20244935 87..149 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20232687..20233338 559..1210 3260 100 Plus
X 23527363 X 20232043..20232259 148..364 1085 100 Plus
X 23527363 X 20232331..20232525 365..559 975 100 Plus
X 23527363 X 20229816..20229903 1..88 440 100 Plus
X 23527363 X 20230012..20230074 87..149 315 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:29:04 has no hits.

LD20793.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:20 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20110428..20110512 64..148 87 -> Plus
chrX 20112478..20112693 149..364 100 -> Plus
chrX 20110255..20110317 1..63 100 -> Plus
chrX 20112765..20112959 365..559 98 -> Plus
chrX 20113122..20113770 560..1208 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:03 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 1..693 97..789 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:14 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 1..693 97..789 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:32 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 1..693 97..789 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:59 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RB 1..693 97..789 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:29:54 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 1..693 97..789 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:42 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 25..1232 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:14 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 25..1232 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:32 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 31..1238 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:59 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 25..1232 1..1208 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:29:54 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 31..1238 1..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:20 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
X 20244677..20244763 1..87 100 -> Plus
X 20244874..20244934 88..148 100 -> Plus
X 20246905..20247120 149..364 100 -> Plus
X 20247192..20247386 365..559 100 -> Plus
X 20247549..20248197 560..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:20 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
X 20244677..20244763 1..87 100 -> Plus
X 20244874..20244934 88..148 100 -> Plus
X 20246905..20247120 149..364 100 -> Plus
X 20247192..20247386 365..559 100 -> Plus
X 20247549..20248197 560..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:20 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
X 20244677..20244763 1..87 100 -> Plus
X 20244874..20244934 88..148 100 -> Plus
X 20246905..20247120 149..364 100 -> Plus
X 20247192..20247386 365..559 100 -> Plus
X 20247549..20248197 560..1208 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:32 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20115751..20115837 1..87 100 -> Plus
arm_X 20115948..20116008 88..148 100 -> Plus
arm_X 20117979..20118194 149..364 100 -> Plus
arm_X 20118266..20118460 365..559 100 -> Plus
arm_X 20118623..20119271 560..1208 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:24 Download gff for LD20793.complete
Subject Subject Range Query Range Percent Splice Strand
X 20232044..20232259 149..364 100 -> Plus
X 20232331..20232525 365..559 100 -> Plus
X 20232688..20233336 560..1208 100   Plus
X 20229816..20229902 1..87 100 -> Plus
X 20230013..20230073 88..148 100 -> Plus

LD20793.hyp Sequence

Translation from 0 to 788

> LD20793.hyp
LKRTILERKFQVSPFHFLRAFEYIYIFFTAPNMQRFQVCSVLILAWIACG
HALAVGSPECPEKYGVQAYAHTENCDQFFLCTNGTLTLETCENGLLFDGK
GAVHNHCNYNWAVDCKGRQWDPTPISTPACEYQFGLYAVSKDCSTTYIKC
AHGEPHEQDCDAGLAYDERIHGCNWPDQLLEHCNPEAVVGFKCPTKVDPN
SVAARFWPFPRFPVAGDCHRLITCVEGHPRLISCGEDKVFDEHTLTCEDP
EYASGSCANYGK*

LD20793.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-PB 230 CG17058-PB 1..230 33..262 1329 100 Plus
Peritrophin-A-PA 230 CG17058-PA 1..230 33..262 1329 100 Plus
Peritrophin-A-PC 157 CG17058-PC 1..157 33..189 897 98.1 Plus
Gasp-PB 235 CG10287-PB 1..221 33..260 322 34.6 Plus
Gasp-PA 258 CG10287-PA 1..221 33..260 322 34.6 Plus

LD20793.pep Sequence

Translation from 96 to 788

> LD20793.pep
MQRFQVCSVLILAWIACGHALAVGSPECPEKYGVQAYAHTENCDQFFLCT
NGTLTLETCENGLLFDGKGAVHNHCNYNWAVDCKGRQWDPTPISTPACEY
QFGLYAVSKDCSTTYIKCAHGEPHEQDCDAGLAYDERIHGCNWPDQLLEH
CNPEAVVGFKCPTKVDPNSVAARFWPFPRFPVAGDCHRLITCVEGHPRLI
SCGEDKVFDEHTLTCEDPEYASGSCANYGK*

LD20793.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20240-PA 230 GF20240-PA 1..230 1..230 1210 96.5 Plus
Dana\GF18629-PA 257 GF18629-PA 1..223 1..229 289 34 Plus
Dana\GF14304-PA 237 GF14304-PA 11..205 25..216 249 32 Plus
Dana\GF20239-PA 239 GF20239-PA 1..226 1..223 247 28.8 Plus
Dana\GF14303-PA 242 GF14303-PA 1..214 1..217 236 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19276-PA 230 GG19276-PA 1..230 1..230 1231 99.6 Plus
Dere\GG10600-PA 258 GG10600-PA 1..223 1..229 291 34 Plus
Dere\GG24283-PA 250 GG24283-PA 1..217 1..216 278 31.9 Plus
Dere\GG19275-PA 237 GG19275-PA 2..224 3..223 245 28.2 Plus
Dere\GG10079-PA 333 GG10079-PA 85..270 27..216 222 32 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12618-PA 230 GH12618-PA 1..230 1..230 1152 92.6 Plus
Dgri\GH12620-PA 197 GH12620-PA 3..197 15..230 883 79.6 Plus
Dgri\GH14287-PA 255 GH14287-PA 1..223 1..229 285 33.6 Plus
Dgri\GH10689-PA 249 GH10689-PA 1..213 1..217 257 31.7 Plus
Dgri\GH10690-PA 237 GH10690-PA 10..205 24..216 246 32.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-PB 230 CG17058-PB 1..230 1..230 1329 100 Plus
Peritrophin-A-PA 230 CG17058-PA 1..230 1..230 1329 100 Plus
Peritrophin-A-PC 157 CG17058-PC 1..157 1..157 897 98.1 Plus
Gasp-PB 235 CG10287-PB 1..221 1..228 322 34.6 Plus
Gasp-PA 258 CG10287-PA 1..221 1..228 322 34.6 Plus
obst-E-PB 249 CG11142-PB 9..217 12..216 309 34.4 Plus
obst-E-PA 242 CG11142-PA 1..216 1..219 271 30.9 Plus
obst-A-PB 237 CG17052-PB 5..230 6..230 269 29.3 Plus
obst-A-PA 237 CG17052-PA 5..230 6..230 269 29.3 Plus
obst-B-PA 337 CG4778-PA 85..270 27..216 243 32 Plus
CG10154-PB 316 CG10154-PB 128..313 26..220 148 24.7 Plus
CG10154-PA 316 CG10154-PA 128..313 26..220 148 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11033-PA 230 GI11033-PA 1..230 1..230 1156 93.5 Plus
Dmoj\GI23181-PA 256 GI23181-PA 1..223 1..229 293 34.5 Plus
Dmoj\GI11221-PA 233 GI11221-PA 11..207 23..216 262 33.2 Plus
Dmoj\GI11215-PA 247 GI11215-PA 1..214 1..217 243 32.1 Plus
Dmoj\GI11032-PA 247 GI11032-PA 2..224 3..223 237 27.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13083-PA 230 GL13083-PA 1..230 1..230 1160 92.2 Plus
Dper\GL23484-PA 259 GL23484-PA 1..223 1..229 282 33.6 Plus
Dper\GL19117-PA 227 GL19117-PA 3..201 21..216 249 31.4 Plus
Dper\GL13082-PA 238 GL13082-PA 2..225 3..223 249 28.6 Plus
Dper\GL19116-PA 243 GL19116-PA 1..216 1..219 244 31.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14302-PA 230 GA14302-PA 1..230 1..230 1170 93 Plus
Dpse\GA10221-PA 259 GA10221-PA 1..223 1..229 282 33.6 Plus
Dpse\GA14300-PA 238 GA14300-PA 2..225 3..223 249 28.6 Plus
Dpse\GA25356-PA 228 GA25356-PA 4..202 21..216 247 31.4 Plus
Dpse\GA10790-PA 243 GA10790-PA 1..216 1..219 243 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23015-PA 230 GM23015-PA 1..230 1..230 1226 99.1 Plus
Dsec\GM10569-PA 258 GM10569-PA 1..223 1..229 294 34 Plus
Dsec\GM17998-PA 242 GM17998-PA 1..216 1..219 242 31.2 Plus
Dsec\GM17883-PA 334 GM17883-PA 85..270 27..216 222 32 Plus
Dsec\GM23014-PA 226 GM23014-PA 2..213 3..223 218 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17481-PA 230 GD17481-PA 1..230 1..230 1229 99.1 Plus
Dsim\GD19561-PA 258 GD19561-PA 1..223 1..229 290 34 Plus
Dsim\GD22632-PA 249 GD22632-PA 1..217 1..216 279 33.2 Plus
Dsim\GD23651-PA 334 GD23651-PA 85..270 27..216 222 32 Plus
Dsim\GD17480-PA 429 GD17480-PA 168..337 20..189 188 30.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15814-PA 230 GJ15814-PA 1..230 1..230 1144 92.6 Plus
Dvir\GJ14495-PA 256 GJ14495-PA 1..223 1..229 284 33.6 Plus
Dvir\GJ18328-PA 247 GJ18328-PA 1..214 1..217 253 31.2 Plus
Dvir\GJ18329-PA 242 GJ18329-PA 14..210 23..216 248 31.7 Plus
Dvir\GJ15813-PA 237 GJ15813-PA 2..224 3..223 227 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25194-PA 233 GK25194-PA 2..233 1..230 1153 92.2 Plus
Dwil\GK14210-PA 256 GK14210-PA 1..223 1..229 291 34.5 Plus
Dwil\GK15421-PA 234 GK15421-PA 6..202 23..216 253 33.7 Plus
Dwil\GK15420-PA 244 GK15420-PA 1..214 1..217 232 30.6 Plus
Dwil\GK25193-PA 233 GK25193-PA 8..223 12..223 227 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17865-PA 230 GE17865-PA 1..230 1..230 1229 99.1 Plus
Dyak\GE24117-PA 258 GE24117-PA 1..223 1..229 292 34 Plus
Dyak\GE18979-PA 249 GE18979-PA 1..217 1..216 260 30.7 Plus
Dyak\GE17864-PA 237 GE17864-PA 2..224 3..223 246 28.2 Plus
Dyak\GE18893-PA 334 GE18893-PA 63..270 5..216 220 30.1 Plus