Clone LD20870 Report

Search the DGRC for LD20870

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:208
Well:70
Vector:pBS SK-
Associated Gene/TranscriptCG42304-RA
Protein status:LD20870.pep: gold
Preliminary Size:3007
Sequenced Size:3212

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1247 2001-01-01 Release 2 assignment
CG1248 2001-01-01 Release 2 assignment
CG32297 2003-01-01 Sim4 clustering to Release 3
CG32297 2003-04-25 Blastp of sequenced clone
CG32297 2008-04-29 Release 5.5 accounting
CG42304 2008-08-15 Release 5.9 accounting
CG42303 2008-08-15 Release 5.9 accounting
CG42303 2008-12-18 5.12 accounting
CG42304 2008-12-18 5.12 accounting

Clone Sequence Records

LD20870.complete Sequence

3212 bp (3212 high quality bases) assembled on 2003-04-25

GenBank Submission: BT010052

> LD20870.complete
TCGAGTTTTCAGGAGCTGTATAAAAAAGGCCTGGATATAGGTGAGCAGCA
GAAGCAGCGCCAGAAGGAGCTGCTAAAGCAGCAGAAACTCCGCCGACAGC
AGGAACAGGATGACTACCGTCCGCTGCAAAATCAAGAGAAACCGGTGCCA
AGAAAGAAAAGCGGGAAACGTTCTGGTCACCAAAAAGGCATCCCGTACAG
ACCACAACTCTCGGAGTGGCTGCGCCATAAGCCCGACGATCTCAACGAGT
GGCTGCTGGTACCTTGTCCAGTGGGCAAAAGGTGCCTCGTGGTGGCAAGC
AAGGGGATCACCAAGGCGTACTCCAAAGGGGGCTGGATGTTCGTGAATTT
CCGATCCTCGCTGCCCGGCGACTGGCAGCTCCAAAAGGGTGAAACAATAC
TAGACTGCGTGTATGTTGAGGATGCGGACACCTTCTATGTGCTGGATGCC
ATATCATTTGGGCTACAGGAAGTGCAGGAGTGCGAGGCGTCCTTTCGTTT
CTATTGGTTGCGCGCCCGATTCGAGGAGCACGATTATGACAAGATTAGCG
AGAACAACGAAAAGAAATTTAAGCTCCTGGATCACTTCGACTTCGAGGAC
CCCTCCGCAGTAGAACAGGCTCTGCATAAGTATCCTTTTTTCCCGGAGAA
CAAGCCAGACCTAGATGGCTTCCTATTTTATCATAAAGAGGCTAGTTATG
TGTGTCGGGAAACTCCCTTAGTATGCTGGCTGTTTCCATTTATGATGGAG
GATGTCCTTGGCTTGCCCGTTAATAAGTGCTATAAGGCCCCGGAGGATTA
CCAACCCAGCCATGTTTTGCAATATATGGATGCATTTGAACAAAAGCTGG
CAGAGCACAGAAGGACTCTTAAAGAGCAGAAAAAGAAAGTGAACGAGCAG
AAGGAGGATCCACACACCATGGAGGCGGAAGAGGATGTCGAAAGCGATGA
GTACGATAGCTTAAAGCGAGTACTGGATCAACAGCGACGTCTGGAGCTAG
GTGAATTCGACATGGACTGTGCGGAGCCGCCATCAGCTGATGGCTGCTAG
GCGAAATGGGCAGCGGTGTGGGGGTGGCTTTTCTGCGCAGACGCTTTGAA
AACACGGCCCTGGACAAATAGCCTCAGCTCGCGCCCAGGAAAATCAGAAA
ACCCAGATTGCGGCCAGCCCACCAGCAAACAGAACTTATTGAAATTGTTA
AAAAATTTCTAACCAAACATGGTCATTCAGCGAAGTTGGAAGATCCCCAC
TGACGTGGGGGGTTCCATAAACAGCAGCACCACATCAGCTAACGAGGTGC
AGCAGCGTTCATCTCCGGGCATGCAACTGCAGGCAGCCAATTCCTCCTCA
GACGACTCCGACTGCTCTAATCAAACCACACATTCGATGGACACACGGGT
GGCCAGTCCGGTGGAGGGTGTCCGAAAGCAGACGGAAAAGGATGTGGTAC
CCGAAACCAACACAATCACCTTGTCCCTGCTGGGCGAATCCACATCCTCT
GATGCAGAGTCCTCGCAGAAATATGTAACCACACCAGACATGGCCGAGAA
CATGTTGCAACGCATTCGCCAGCGACTTGGTGGCTCTCACAATATGGAAA
GTGGCGGTAGTGCGGAGTCCGCGATGAGAGCTCTAGAACTTTTGAGGATC
AGTGTACAGCAAGCCTTTGATGCTGAGGTGAATGAGCTCATTAAGAAATA
TATGCAAAACTACTTTAAACCCGCTTTTGGCAACATCAAGGAGAACCTGG
GCCAGCATTCTGTTAATGAGGAAACACTTCAGAAGATGTCCTCGTGTGCA
TTGTTGGAGAATGCCAAGGCTCAGTACACGAACTTTGTGCGCCAGCATCG
TTTGGTTGCTAACGCCACGGATCAGCAGCGCTTGGCGCTCAAACGCTCAG
CTAAACAGGATCTCAACCCAATTAGTAAAGTGTTTGCTGGTAACGCGGGT
TTTATGCCAAACAAACCCATGCCCTGCACGGCAACTACGGCCAACCAATT
GCCAACCCAGAACCAAAACCCTGCGGCTCTCCTGCTTTCTCAACCGGACT
TGCAACCAGTTCAACCTCTTCAGCAGCAGCAGCAACAGGAACAAACACAA
ACGCAAAACCAACAACAACCGCAGCATCGCTCCACGGTTACTCCATTGGT
GGGCGGCACTCTGCCCACTCCTGTGCGCCGGCAGATATTCTGGAACACCG
CGCAGATTTCGACTACCACCAAGTTCGTGCTGGATGTGCAGGCTAACCTA
TCGTTTGGCTTTGGCACCGACGGCAAGGAACGATTAGCCAGCAAGCATCC
AGAATTGATACGCTACCTGCCGGATGGCGAGGACAGGGAGTGGTTGGCCA
CCCGTGGGATTATTCCTGCCGAGAATCGAAGCTCACGGTTTTTGTTTCTC
ATCTACGATGAAGTGTGCCGGCTGCAGCAAACACACGAGTTGTATAGGCA
CAAAACCAATATAGATCTTAGCATGATGCTCACCTTCAGCGTCACCGATG
CCATGATACACAAGATGCGGCTGTTCTTCGTGGACCTGAACATCAAGAGC
CGCGGACTTATAACGAATTCATATATTTTGCCCAGCCAGCAGCAGTCAGG
GAATACCAACAACAGTCATTTAAGAAATGCCCTTCTCCAGGGCGCCTCAG
CGCAGCAGCACCAACAACAGGTAGCCACACCACCGTCTGATGAAACTGCG
CTCAAGGAGCTCCCGGCTGCATCACCCACTCCTTGCTTGCAGGGTCAGGT
GGTGGGTAGCACAACAACGCCGTTGAAGACCAAGCTGGCTGCAAGTTCTA
CGCTCAGCTCCTCGCATGCCACACTTACGGCCTTGCTGAACAACGGGGGA
GCTGTTGTGGGAGCAACTCCTACAGGCAACTCCACTTCCAGCAACATCGC
AAAATTTAGAAATTAATTAATGTAGATTAATGTATAATTCTTATGCTTGT
TTGTTACCAATAATGAACGGTGATTTTAGGTTGCTGATTAAATGAAATTC
CATGTTTATGAGTTTGAAAACAGCAGCAATTTTACTTTAAACCATAAAAG
GCGGCCCATAACCTTCATGTCTATTTCTGCGCGTAACATTTAATCATGTC
CAACGTAGAATTGTATTGAAAGAAACTGCAATAGTAATAGACAACTTCAA
ATAAATATTTGATGTTTATTGAAACTCAATTTGATATACATTTAAAAAAA
AAAAAAAAAAAA

LD20870.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42304-RA 3193 CG42304-RA 1..3191 1..3191 15955 100 Plus
CG42303-RA 3200 CG42303-RA 7..3197 1..3191 15955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2651630..2653147 1..1518 7290 98.7 Plus
chr3L 24539361 chr3L 2653460..2654943 1708..3191 7165 98.9 Plus
chr3L 24539361 chr3L 2653203..2653396 1514..1707 925 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2652140..2653657 1..1518 7590 100 Plus
3L 28110227 3L 2653970..2655453 1708..3191 7420 100 Plus
3L 28110227 3L 2653713..2653906 1514..1707 970 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2652140..2653657 1..1518 7590 100 Plus
3L 28103327 3L 2653970..2655453 1708..3191 7420 100 Plus
3L 28103327 3L 2653713..2653906 1514..1707 970 100 Plus
Blast to na_te.dros performed 2019-03-16 21:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1062..1153 44..135 181 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1086..1176 44..140 156 66 Plus

LD20870.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:09 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2651630..2653147 1..1518 98 -> Plus
chr3L 2653208..2653396 1519..1707 98 -> Plus
chr3L 2653460..2654945 1708..3193 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:04 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..1698 1219..2916 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:48:32 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..1698 1219..2916 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:13 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..1698 1219..2916 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:30:28 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..1698 1219..2916 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:48 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RB 1..1698 1219..2916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:58:27 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..3193 1..3193 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:48:32 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42303-RA 7..3199 1..3193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:13 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 53..3245 1..3193 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:30:28 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
CG42304-RA 1..3193 1..3193 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:48 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
Snup-RA 53..3245 1..3193 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:09 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2652140..2653657 1..1518 100 -> Plus
3L 2653718..2653906 1519..1707 100 -> Plus
3L 2653970..2655455 1708..3193 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:09 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2652140..2653657 1..1518 100 -> Plus
3L 2653718..2653906 1519..1707 100 -> Plus
3L 2653970..2655455 1708..3193 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:09 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2652140..2653657 1..1518 100 -> Plus
3L 2653718..2653906 1519..1707 100 -> Plus
3L 2653970..2655455 1708..3193 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:13 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2652140..2653657 1..1518 100 -> Plus
arm_3L 2653718..2653906 1519..1707 100 -> Plus
arm_3L 2653970..2655455 1708..3193 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:07:44 Download gff for LD20870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2652140..2653657 1..1518 100 -> Plus
3L 2653718..2653906 1519..1707 100 -> Plus
3L 2653970..2655455 1708..3193 99   Plus

LD20870.pep Sequence

Translation from 1218 to 2915

> LD20870.pep
MVIQRSWKIPTDVGGSINSSTTSANEVQQRSSPGMQLQAANSSSDDSDCS
NQTTHSMDTRVASPVEGVRKQTEKDVVPETNTITLSLLGESTSSDAESSQ
KYVTTPDMAENMLQRIRQRLGGSHNMESGGSAESAMRALELLRISVQQAF
DAEVNELIKKYMQNYFKPAFGNIKENLGQHSVNEETLQKMSSCALLENAK
AQYTNFVRQHRLVANATDQQRLALKRSAKQDLNPISKVFAGNAGFMPNKP
MPCTATTANQLPTQNQNPAALLLSQPDLQPVQPLQQQQQQEQTQTQNQQQ
PQHRSTVTPLVGGTLPTPVRRQIFWNTAQISTTTKFVLDVQANLSFGFGT
DGKERLASKHPELIRYLPDGEDREWLATRGIIPAENRSSRFLFLIYDEVC
RLQQTHELYRHKTNIDLSMMLTFSVTDAMIHKMRLFFVDLNIKSRGLITN
SYILPSQQQSGNTNNSHLRNALLQGASAQQHQQQVATPPSDETALKELPA
ASPTPCLQGQVVGSTTTPLKTKLAASSTLSSSHATLTALLNNGGAVVGAT
PTGNSTSSNIAKFRN*

LD20870.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24244-PA 885 GF24244-PA 353..885 23..565 2149 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14881-PA 887 GG14881-PA 342..887 24..565 2441 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16399-PA 907 GH16399-PA 372..907 26..565 1381 59.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42304-PA 565 CG32297-PA 1..565 1..565 2873 100 Plus
CG42304-PB 565 CG42304-PB 1..565 1..565 2873 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12481-PA 938 GI12481-PA 376..610 25..255 678 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15758-PA 497 GL15758-PA 1..472 1..476 1752 71.4 Plus
Dper\GL22466-PA 239 GL22466-PA 1..145 420..542 398 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16812-PA 913 GA16812-PA 349..882 24..542 1858 69.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14505-PA 883 GM14505-PA 342..883 24..565 2769 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13702-PA 883 GD13702-PA 342..883 24..565 2780 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12385-PA 593 GJ12385-PA 45..593 24..565 1490 61.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12663-PA 916 GK12663-PA 350..884 28..545 1668 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20333-PA 876 GE20333-PA 336..876 24..565 2440 93.9 Plus

LD20870.hyp Sequence

Translation from 1218 to 2915

> LD20870.hyp
MVIQRSWKIPTDVGGSINSSTTSANEVQQRSSPGMQLQAANSSSDDSDCS
NQTTHSMDTRVASPVEGVRKQTEKDVVPETNTITLSLLGESTSSDAESSQ
KYVTTPDMAENMLQRIRQRLGGSHNMESGGSAESAMRALELLRISVQQAF
DAEVNELIKKYMQNYFKPAFGNIKENLGQHSVNEETLQKMSSCALLENAK
AQYTNFVRQHRLVANATDQQRLALKRSAKQDLNPISKVFAGNAGFMPNKP
MPCTATTANQLPTQNQNPAALLLSQPDLQPVQPLQQQQQQEQTQTQNQQQ
PQHRSTVTPLVGGTLPTPVRRQIFWNTAQISTTTKFVLDVQANLSFGFGT
DGKERLASKHPELIRYLPDGEDREWLATRGIIPAENRSSRFLFLIYDEVC
RLQQTHELYRHKTNIDLSMMLTFSVTDAMIHKMRLFFVDLNIKSRGLITN
SYILPSQQQSGNTNNSHLRNALLQGASAQQHQQQVATPPSDETALKELPA
ASPTPCLQGQVVGSTTTPLKTKLAASSTLSSSHATLTALLNNGGAVVGAT
PTGNSTSSNIAKFRN*

LD20870.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42304-PA 565 CG32297-PA 1..565 1..565 2873 100 Plus
CG42304-PB 565 CG42304-PB 1..565 1..565 2873 100 Plus