Clone LD20874 Report

Search the DGRC for LD20874

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:208
Well:74
Vector:pBS SK-
Associated Gene/TranscriptCG2201-RA
Protein status:LD20874.pep: gold
Preliminary Size:1925
Sequenced Size:2005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2201 2003-01-01 Sim4 clustering to Release 3
CG2201 2005-01-26 Blastp of sequenced clone
CG2201 2008-04-29 Release 5.5 accounting
CG2201 2008-08-15 Release 5.9 accounting
CG2201 2008-12-18 5.12 accounting

Clone Sequence Records

LD20874.complete Sequence

2005 bp (2005 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021392

> LD20874.complete
TGAGTAGGCGCTTTGAAACCGTTAACGGAGACTGCGTATATACTCAATGT
TATTTTATATTGCACTATAATAAAAACCACGTGACGCCCAATTCACCGCA
AAAATCTGTTTTTGAAGTGCTGCTGTCAGACACCGCTTATTTGTCGGTGC
CTGGCTTCCAAAATTAAATTACCAAAATTAAAATACCATAAATAAATAAG
AAAGCGAAGGACAATGGCCACCAACCTGCAAAAGGCCACCCTTGAGGAAA
TTCGACATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCCTGG
AAAGTGGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGGGCT
GTCAAATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACGATG
AGCTGGACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACCGCA
ACTGTGACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGCTGC
CAAGGCGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACGATG
ACGTCGCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAGCGA
TGCGATAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGCCCC
CAAGCAGCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCCATG
GTGATCACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCCCTT
CTCAGTGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGGCGG
ACGTATTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAATTGG
GAGAGCAACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATCCAC
AGTCTTAATATACCCATGTCTAAGGAGCCCGATTGGATTTGGAATTGTAT
GCAGCGTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCCAAA
CGAATCAAAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGACC
TTTGACTACGTTCAAGAGATGGCCTGGATTAGGTCGATTATCGATGAAGG
AGATTATCCAGTTGTGTTCTGTCATAATGATCTGCAAGAAGGTAATATTC
TGATGCGACAACCGTCAGCTGGTCAAAACGAACGGACCCCCCGGGAGTCA
ATCAGTAGCCTGAGATCCAACTTCGACGAAACTTTGGGTGATAGCCTTGA
TGGAAATAGCAATATATCGGATACGGAGACACACAAATCACGTAGCGTGT
CGCCTTCACCATGCCCGGAGTTGGACACTACGAATGACTCAGCCCTGGAT
TCCAGCTTCATGGCCGATAATGAGCCGGATCTTATTATCATCGACTTTGA
GTATTGTGCCTACAACTACCGTGGCTATGATCTTGCCAATCATTTTATTG
AGTGGACTTTCGACTACACTAACCCACAGTTCCCTTACTTCTACCACAAC
TCCAGCAACTGCGCAACTGTTCAGCAACGGCGCGACTTCATTGTAAACTA
TTTAAAGAAATTTCACGATGACGAGAACTATAATATCACTGGCCAGGAGT
TGATGAAGGTAGACGCTGAGATTCAGTTCTTTACAATGCTGTCTCATCTG
TTCTGGAGCCTTTGGTCCGTAATTAATGTCACATCGGCGATTGAGTTTGG
TTATTGGGAATATGGTATTGCTCGAATTTTGGAATATCAAAAGCTAAAGG
CAGCTTATCAAGCTAATTAAGACAAATATCTGAACCTTTATATAAATCGA
ATCAGAACCATAGTTAACTAGCCTAGACTTAATTGACCTTGCAATACCTG
TCCGTCTTTGTCCGTGTCTAGAAATATTTTTAACTAAAAATGTTTGAATA
GTTCATACAAAACATTAAATAACATCGAACTACTTTAAAAGACTATTAAA
ATTTGTAATAAATAATTTATTTTACATAATTGAAAAAAAAAAAAAAAAAA
AAAAA

LD20874.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-RA 2853 CG2201-RA 380..2365 1..1986 9930 100 Plus
CG2201.c 2788 CG2201.c 649..2402 233..1986 8770 100 Plus
CG2201-RD 2563 CG2201-RD 652..2405 233..1986 8770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21613596..21614020 1708..1284 2125 100 Minus
chr2L 23010047 chr2L 21614676..21615068 1214..822 1965 100 Minus
chr2L 23010047 chr2L 21615986..21616317 671..340 1660 100 Minus
chr2L 23010047 chr2L 21613260..21613535 1982..1707 1380 100 Minus
chr2L 23010047 chr2L 21621857..21622091 235..1 1160 99.6 Minus
chr2L 23010047 chr2L 21615773..21615928 823..668 780 100 Minus
chr2L 23010047 chr2L 21616498..21616606 341..233 545 100 Minus
chr2L 23010047 chr2L 21614102..21614172 1283..1213 355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21615102..21615526 1708..1284 2125 100 Minus
2L 23513712 2L 21616182..21616574 1214..822 1965 100 Minus
2L 23513712 2L 21617492..21617823 671..340 1660 100 Minus
2L 23513712 2L 21614762..21615041 1986..1707 1400 100 Minus
2L 23513712 2L 21623365..21623599 235..1 1175 100 Minus
2L 23513712 2L 21617279..21617434 823..668 780 100 Minus
2L 23513712 2L 21618004..21618112 341..233 545 100 Minus
2L 23513712 2L 21615608..21615678 1283..1213 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21615102..21615526 1708..1284 2125 100 Minus
2L 23513712 2L 21616182..21616574 1214..822 1965 100 Minus
2L 23513712 2L 21617492..21617823 671..340 1660 100 Minus
2L 23513712 2L 21614762..21615041 1986..1707 1400 100 Minus
2L 23513712 2L 21623365..21623599 235..1 1175 100 Minus
2L 23513712 2L 21617279..21617434 823..668 780 100 Minus
2L 23513712 2L 21618004..21618112 341..233 545 100 Minus
2L 23513712 2L 21615608..21615678 1283..1213 355 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:01:47 has no hits.

LD20874.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:02:51 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21613260..21613534 1708..1982 100 <- Minus
chr2L 21613597..21614020 1284..1707 100 <- Minus
chr2L 21614102..21614170 1215..1283 100 <- Minus
chr2L 21614676..21615067 823..1214 100 <- Minus
chr2L 21615774..21615926 670..822 100 <- Minus
chr2L 21615988..21616315 342..669 100 <- Minus
chr2L 21616498..21616604 235..341 100 <- Minus
chr2L 21621858..21622091 1..234 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:05 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1557 214..1770 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:20 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1557 214..1770 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:06:24 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1557 214..1770 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:55 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1557 214..1770 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:02 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1557 214..1770 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:06:59 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1982 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:20 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1982 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:06:24 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 29..2010 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:55 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 1..1982 1..1982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:02 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RA 29..2010 1..1982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:02:51 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618004..21618110 235..341 100 <- Minus
2L 21614766..21615040 1708..1982 100 <- Minus
2L 21615103..21615526 1284..1707 100 <- Minus
2L 21615608..21615676 1215..1283 100 <- Minus
2L 21616182..21616573 823..1214 100 <- Minus
2L 21617280..21617432 670..822 100 <- Minus
2L 21617494..21617821 342..669 100 <- Minus
2L 21623366..21623599 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:02:51 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618004..21618110 235..341 100 <- Minus
2L 21614766..21615040 1708..1982 100 <- Minus
2L 21615103..21615526 1284..1707 100 <- Minus
2L 21615608..21615676 1215..1283 100 <- Minus
2L 21616182..21616573 823..1214 100 <- Minus
2L 21617280..21617432 670..822 100 <- Minus
2L 21617494..21617821 342..669 100 <- Minus
2L 21623366..21623599 1..234 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:02:51 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618004..21618110 235..341 100 <- Minus
2L 21614766..21615040 1708..1982 100 <- Minus
2L 21615103..21615526 1284..1707 100 <- Minus
2L 21615608..21615676 1215..1283 100 <- Minus
2L 21616182..21616573 823..1214 100 <- Minus
2L 21617280..21617432 670..822 100 <- Minus
2L 21617494..21617821 342..669 100 <- Minus
2L 21623366..21623599 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:06:24 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21618004..21618110 235..341 100 <- Minus
arm_2L 21614766..21615040 1708..1982 100 <- Minus
arm_2L 21615103..21615526 1284..1707 100 <- Minus
arm_2L 21615608..21615676 1215..1283 100 <- Minus
arm_2L 21616182..21616573 823..1214 100 <- Minus
arm_2L 21617280..21617432 670..822 100 <- Minus
arm_2L 21617494..21617821 342..669 100 <- Minus
arm_2L 21623366..21623599 1..234 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:13 Download gff for LD20874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21623366..21623599 1..234 100   Minus
2L 21614766..21615040 1708..1982 100 <- Minus
2L 21615103..21615526 1284..1707 100 <- Minus
2L 21615608..21615676 1215..1283 100 <- Minus
2L 21616182..21616573 823..1214 100 <- Minus
2L 21617280..21617432 670..822 100 <- Minus
2L 21617494..21617821 342..669 100 <- Minus
2L 21618004..21618110 235..341 100 <- Minus

LD20874.pep Sequence

Translation from 213 to 1769

> LD20874.pep
MATNLQKATLEEIRHAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFL
YYVSLPDLNDYDELDEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVG
VTLMARELINNDDVADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQP
REVLLRIYGQTHGDHALESMITESVVFALLSERNYGPKLHGIFPGGRIEQ
YIPARALTTAELGEQRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWV
SGLESIVNGSVQTNQKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPV
VFCHNDLQEGNILMRQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSN
ISDTETHKSRSVSPSPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAY
NYRGYDLANHFIEWTFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKF
HDDENYNITGQELMKVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEY
GIARILEYQKLKAAYQAN*

LD20874.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14425-PA 529 GF14425-PA 1..526 1..515 1861 68.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21484-PA 522 GG21484-PA 1..521 1..517 2530 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10948-PA 577 GH10948-PA 45..576 6..517 1911 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-PG 518 CG2201-PG 1..518 1..518 2730 100 Plus
CG2201-PA 518 CG2201-PA 1..518 1..518 2730 100 Plus
CG2201-PF 554 CG2201-PF 44..554 8..518 2696 100 Plus
CG2201-PB 554 CG2201-PB 44..554 8..518 2696 100 Plus
CG2201-PC 415 CG2201-PC 1..415 104..518 2206 100 Plus
CG2201-PE 240 CG2201-PE 44..239 8..203 1014 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12154-PA 571 GI12154-PA 44..568 6..515 1897 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25955-PA 558 GL25955-PA 43..557 6..517 1984 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15298-PA 567 GA15298-PA 50..566 6..517 1987 75.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16134-PA 559 GM16134-PA 44..559 8..518 2508 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21635-PA 520 GD21635-PA 1..520 1..518 2561 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14204-PA 545 GJ14204-PA 44..544 6..517 1910 71.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24872-PA 569 GK24872-PA 46..568 6..517 2019 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12985-PA 524 GE12985-PA 1..523 1..517 2509 89.1 Plus

LD20874.hyp Sequence

Translation from 213 to 1769

> LD20874.hyp
MATNLQKATLEEIRHAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFL
YYVSLPDLNDYDELDEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVG
VTLMARELINNDDVADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQP
REVLLRIYGQTHGDHALESMITESVVFALLSERNYGPKLHGIFPGGRIEQ
YIPARALTTAELGEQRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWV
SGLESIVNGSVQTNQKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPV
VFCHNDLQEGNILMRQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSN
ISDTETHKSRSVSPSPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAY
NYRGYDLANHFIEWTFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKF
HDDENYNITGQELMKVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEY
GIARILEYQKLKAAYQAN*

LD20874.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-PG 518 CG2201-PG 1..518 1..518 2730 100 Plus
CG2201-PA 518 CG2201-PA 1..518 1..518 2730 100 Plus
CG2201-PF 554 CG2201-PF 44..554 8..518 2696 100 Plus
CG2201-PB 554 CG2201-PB 44..554 8..518 2696 100 Plus
CG2201-PC 415 CG2201-PC 1..415 104..518 2206 100 Plus