Clone LD20892 Report

Search the DGRC for LD20892

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:208
Well:92
Vector:pBS SK-
Associated Gene/TranscriptMyd88-RA
Protein status:LD20892.pep: gold
Preliminary Size:2904
Sequenced Size:2721

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2078 2001-01-01 Release 2 assignment
CG2078 2001-11-29 Blastp of sequenced clone
CG2078 2003-01-01 Sim4 clustering to Release 3
Myd88 2008-04-29 Release 5.5 accounting
Myd88 2008-08-15 Release 5.9 accounting
Myd88 2008-12-18 5.12 accounting

Clone Sequence Records

LD20892.complete Sequence

2721 bp (2721 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069468

> LD20892.complete
CTGATCTGAAAAGTGGGAACGCAGCGCAGATAAATTAATTAGCAATTAGC
CAGTGCAAACAGAGTGTTGTCAGCCGACTAGAAAAAGCAGCTGAGCTGAT
AGTTCCGCCTGTGGCCCCCGCGCTTTCGCCCTGCATCGGAACGAAACCAA
AATAAACAAGCGAGTGAAAGGCGGTGGAGAAAGAGCGCGGGAGAGTGAGC
GCGAAGAGTAGTCCGTTGGGGAGGAGGCGGAGGAGGAGCGGACAACGAGG
CAGAAACAAAAGCACAAACGGCGGACAGAACCAGTCGAAACAAAACAACA
AACCGGAGCGGACGCACTCGAAAAAAGCGAAACGAATTTATTTCTGTGCT
TAGGGCGACACTGTGTGCGTGCGCCACTGATTGTGAGTGTGTGTGTTGTG
TATATTTAAACAATATTCAAAAAATCATACGCCAGACGAATAAAAAACGC
GACGAAAACGAAGGCGAAGATCTCCATCTCCTCTCGCAGCGGAGCAGACA
GATAAATAAAAACAGAATCCGAGACAGCAACAACAACGCGACTGTGACGC
GGCAAGGTGCTGGAGGTCACTCGGTCCATTTCGCACCGCACTGAAGTATA
GAAGTTTAGCAGTAAAGCACCACCCCCTTCTAACCAGTTTCAGCTTCATC
CGCCCGCAAAAAACAAAAAAAAAACAAGCACGCGCGATCGGAAAACTCGA
AAAAATCTACAGAGCAGCACAACTCACGCGCTTCATCGTTTTATTGCTCG
CCGCCCTCTCGACTGATAAACGTCAGTTGATAAATATATATCGCATCACA
TCGCATCCACACTAAAACAAATACGCCAGCAAACAAACACCAATTATTCC
AATAAAGCCAGCGCCAAGTGCGAATGCGCCCTCGATTTGTATGCCATCAG
CAGCACTCGGTGGCCCATTCCCACTACCAGCCCCACTCCCACTTCCATCA
CCATACCCACCGCCATCCCAATCCGCCCCATCACCATCACATTTACGGCG
CCACTGACGTCAGTTATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCC
GAGGGAGTTATGGACTCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGG
GCACTTCAACGAGACCCCATTATCCGCACTGGGCATCGAGACCCGCACCC
AGCTGTCCCGCATGCTGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGC
TACCAGCGGGACTGGCGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATT
CGTCGACGAGAACGCCAACAATCCCATGGATCTGGTGCTGATCAGCTGGA
GCCAGCGGAGTCCCCAGACCGCCAAGGTGGGCCATCTGGAACACTTCCTG
GGCATTATCGATCGGTGGGACGTCTGCGACGATATCCAGGAGAATCTGGC
CAAGGACACCCAGCGCTTCATCATGAAACAGGAGCAGCGACAGACTGCTC
TCGTGGAGGCGTGTCCGCCGCCCCCCAGCGACTGCTTCGAGACCAACAAC
AACTACAGCAGCAGCAACAACATCACAGTGGGCCAAAGTGTGCAGATCCT
CAGCGACGAGGACCAGAGATGTGTACAGATGGGCCAACCGCTGCCCAGAT
ACAACGCATGTGTTCTGTACGCGGAGGCAGACATCGATCATGCCACCGAG
ATCATGAATAATCTAGAGTCTGAGCGATACAATCTCAGGCTATTCCTGCG
CCACCGCGACATGCTAATGGGCGTTCCGTTCGAGCATGTCCAGCTATCCC
ATTTCATGGCCACCCGCTGCAATCACCTGATCGTCGTGCTCACAGAGGAG
TTTCTTCGGAGTCCGGAGAACACGTACCTCGTGAACTTCACCCAAAAGAT
CCAGATTGAGAATCACACTCGCAAGATCATACCGATTCTGTACAAAACGG
ACATGCACATACCCCAGACCCTGGGCATTTACACGCACATCAAGTACGCC
GGGGACTCCAAGTTGTTCAACTTCTGGGACAAGTTGGCTCGTTCCCTACA
CGATCTGGATGCCTTTTCGATCTACTCCACGCGCCAGGTGCAGACTCCCT
CGCCGGTGGAGGAATCGGCTCCCCGGGTGACCACTCCCAGCATTCGGATT
CAGATCAACGACAAGGATGTCACTGATATGCCAAACTACAACAGCTGCAA
AGTGCCGGAGGCGGAGACCACAATCGTTTCGGTTTCCGGTGACACCGGCT
CACCCCTGCCGGAGCACAAGCCGAAGAAAAAGGATCGCTTCCTGCGCAGA
ATCACGCACAGCTTTGGAAAGACGGCGCGGAGCGATGGGGCCAGCGGCAA
GACTCTGCGTCATGCCCACTCCGTCAGCACCATAAATGTCACGGAACGCG
AGAGGACACTCAGTGCCAGCAGCTCCAACATCTCCACCACGTCGGAGAGC
AAGAAGAGCTTCATCAAGTGGCAGCCGAACATCCTGAAGAAGGCCCTATT
CTCGCGATCCAGCAGCAAGCTGCAGACGCCGGGCTGAGATCATAGTGTTA
GGATAGCCATTCATTCGATTTCTCGATTCTTTGATTCCTTGTCGTGTGCC
CAGTCTAGTTGTGGCCGCCCAGTCACCAATGTCGTCACCCTCCATGCCTA
GTGATAATCTTTAGCCTAATCCTTATCAAGTCAACTAACTTAATATACTT
AGACGCACTTGTTAACTTATATAAGACAACAACGAATAAAGACAATACCA
CATAAAAAAAAAAAAAAAAAA

LD20892.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Myd88.c 4079 Myd88.c 79..2782 1..2704 13520 100 Plus
Myd88.b 3785 Myd88.b 79..2782 1..2704 13520 100 Plus
Myd88-RA 2914 Myd88-RA 79..2782 1..2704 13520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5194795..5196191 1399..1 6915 99.8 Minus
chr2R 21145070 chr2R 5191201..5191858 2703..2046 3275 99.8 Minus
chr2R 21145070 chr2R 5192990..5193280 1689..1399 1455 100 Minus
chr2R 21145070 chr2R 5192497..5192684 2045..1858 925 99.5 Minus
chr2R 21145070 chr2R 5192757..5192926 1858..1689 850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9307269..9308667 1399..1 6995 100 Minus
2R 25286936 2R 9303677..9304335 2704..2046 3295 100 Minus
2R 25286936 2R 9305467..9305757 1689..1399 1455 100 Minus
2R 25286936 2R 9304974..9305161 2045..1858 940 100 Minus
2R 25286936 2R 9305234..9305403 1858..1689 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9308468..9309866 1399..1 6995 100 Minus
2R 25260384 2R 9304876..9305534 2704..2046 3295 100 Minus
2R 25260384 2R 9306666..9306956 1689..1399 1455 100 Minus
2R 25260384 2R 9306173..9306360 2045..1858 940 100 Minus
2R 25260384 2R 9306433..9306602 1858..1689 850 100 Minus
Blast to na_te.dros performed 2019-03-16 10:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6932 1411..1534 141 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6817 1472..1566 137 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2428 1488..1525 136 84.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2653 1485..1525 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6795 1476..1525 133 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6816 1476..1525 133 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1576 1476..1525 132 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6753 1490..1525 126 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6849 1476..1525 126 76 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2911 1427..1525 125 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2401 1476..1525 124 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2445..2476 1494..1525 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1556 1492..1526 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2472..2522 1476..1526 120 70.6 Plus
roo 9092 roo DM_ROO 9092bp 1122..1154 1492..1524 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6868 1476..1526 119 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2824 1479..1525 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6902 1406..1527 118 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2350 1492..1525 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2464..2497 1492..1525 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6759 1492..1525 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2455 1476..1525 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6828 1476..1525 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2374 1476..1525 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2413 1476..1525 115 70 Plus

LD20892.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:04:48 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5191201..5191858 2046..2703 99 <- Minus
chr2R 5192497..5192683 1859..2045 99 <- Minus
chr2R 5192757..5192925 1690..1858 100 <- Minus
chr2R 5192990..5193279 1400..1689 100 <- Minus
chr2R 5194795..5195203 991..1399 100 == Minus
chr2R 5195281..5196191 1..913 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:06 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 1..1614 874..2487 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:19 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 1..1614 874..2487 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:20:40 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 1..1614 874..2487 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:54 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 1..1614 874..2487 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:53:27 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 1..1614 874..2487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:24 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 10..2712 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:19 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 10..2712 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:20:40 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 56..2758 1..2703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:55 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 10..2712 1..2703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:53:27 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
Myd88-RA 56..2758 1..2703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:48 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9303678..9304335 2046..2703 100 <- Minus
2R 9304974..9305160 1859..2045 100 <- Minus
2R 9305234..9305402 1690..1858 100 <- Minus
2R 9305467..9305756 1400..1689 100 <- Minus
2R 9307269..9308667 1..1399 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:48 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9303678..9304335 2046..2703 100 <- Minus
2R 9304974..9305160 1859..2045 100 <- Minus
2R 9305234..9305402 1690..1858 100 <- Minus
2R 9305467..9305756 1400..1689 100 <- Minus
2R 9307269..9308667 1..1399 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:48 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9303678..9304335 2046..2703 100 <- Minus
2R 9304974..9305160 1859..2045 100 <- Minus
2R 9305234..9305402 1690..1858 100 <- Minus
2R 9305467..9305756 1400..1689 100 <- Minus
2R 9307269..9308667 1..1399 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:20:40 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5191183..5191840 2046..2703 100 <- Minus
arm_2R 5192479..5192665 1859..2045 100 <- Minus
arm_2R 5192739..5192907 1690..1858 100 <- Minus
arm_2R 5192972..5193261 1400..1689 100 <- Minus
arm_2R 5194774..5196172 1..1399 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:22 Download gff for LD20892.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9304877..9305534 2046..2703 100 <- Minus
2R 9306173..9306359 1859..2045 100 <- Minus
2R 9306433..9306601 1690..1858 100 <- Minus
2R 9306666..9306955 1400..1689 100 <- Minus
2R 9308468..9309866 1..1399 100   Minus

LD20892.pep Sequence

Translation from 873 to 2486

> LD20892.pep
MRPRFVCHQQHSVAHSHYQPHSHFHHHTHRHPNPPHHHHIYGATDVSYRR
YRTAGMVVAEGVMDSGSGSGTGTGLGHFNETPLSALGIETRTQLSRMLNR
KKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLISWSQRSPQTA
KVGHLEHFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEACPPP
PSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYA
EADIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCN
HLIVVLTEEFLRSPENTYLVNFTQKIQIENHTRKIIPILYKTDMHIPQTL
GIYTHIKYAGDSKLFNFWDKLARSLHDLDAFSIYSTRQVQTPSPVEESAP
RVTTPSIRIQINDKDVTDMPNYNSCKVPEAETTIVSVSGDTGSPLPEHKP
KKKDRFLRRITHSFGKTARSDGASGKTLRHAHSVSTINVTERERTLSASS
SNISTTSESKKSFIKWQPNILKKALFSRSSSKLQTPG*

LD20892.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13086-PA 537 GF13086-PA 1..537 1..537 2356 83.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10565-PA 545 GG10565-PA 1..545 1..537 2778 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21551-PA 456 GH21551-PA 14..456 78..537 1407 61.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Myd88-PC 537 CG2078-PC 1..537 1..537 2850 100 Plus
Myd88-PB 537 CG2078-PB 1..537 1..537 2850 100 Plus
Myd88-PA 537 CG2078-PA 1..537 1..537 2850 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19523-PA 454 GI19523-PA 2..453 62..536 1446 61.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16895-PA 474 GL16895-PA 8..474 74..537 1914 80.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15226-PB 528 GA15226-PB 1..528 1..537 1961 74.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20612-PA 539 GM20612-PA 1..539 1..537 2895 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10085-PA 537 GD10085-PA 1..537 1..537 2916 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21092-PA 465 GJ21092-PA 18..464 78..536 1492 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19644-PA 582 GK19644-PA 1..578 1..535 1679 61.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22390-PA 535 GE22390-PA 1..534 1..536 2400 89.6 Plus

LD20892.hyp Sequence

Translation from 873 to 2486

> LD20892.hyp
MRPRFVCHQQHSVAHSHYQPHSHFHHHTHRHPNPPHHHHIYGATDVSYRR
YRTAGMVVAEGVMDSGSGSGTGTGLGHFNETPLSALGIETRTQLSRMLNR
KKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLISWSQRSPQTA
KVGHLEHFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEACPPP
PSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYA
EADIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCN
HLIVVLTEEFLRSPENTYLVNFTQKIQIENHTRKIIPILYKTDMHIPQTL
GIYTHIKYAGDSKLFNFWDKLARSLHDLDAFSIYSTRQVQTPSPVEESAP
RVTTPSIRIQINDKDVTDMPNYNSCKVPEAETTIVSVSGDTGSPLPEHKP
KKKDRFLRRITHSFGKTARSDGASGKTLRHAHSVSTINVTERERTLSASS
SNISTTSESKKSFIKWQPNILKKALFSRSSSKLQTPG*

LD20892.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Myd88-PC 537 CG2078-PC 1..537 1..537 2850 100 Plus
Myd88-PB 537 CG2078-PB 1..537 1..537 2850 100 Plus
Myd88-PA 537 CG2078-PA 1..537 1..537 2850 100 Plus