BDGP Sequence Production Resources |
Search the DGRC for LD20892
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 208 |
Well: | 92 |
Vector: | pBS SK- |
Associated Gene/Transcript | Myd88-RA |
Protein status: | LD20892.pep: gold |
Preliminary Size: | 2904 |
Sequenced Size: | 2721 |
Gene | Date | Evidence |
---|---|---|
CG2078 | 2001-01-01 | Release 2 assignment |
CG2078 | 2001-11-29 | Blastp of sequenced clone |
CG2078 | 2003-01-01 | Sim4 clustering to Release 3 |
Myd88 | 2008-04-29 | Release 5.5 accounting |
Myd88 | 2008-08-15 | Release 5.9 accounting |
Myd88 | 2008-12-18 | 5.12 accounting |
2721 bp (2721 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069468
> LD20892.complete CTGATCTGAAAAGTGGGAACGCAGCGCAGATAAATTAATTAGCAATTAGC CAGTGCAAACAGAGTGTTGTCAGCCGACTAGAAAAAGCAGCTGAGCTGAT AGTTCCGCCTGTGGCCCCCGCGCTTTCGCCCTGCATCGGAACGAAACCAA AATAAACAAGCGAGTGAAAGGCGGTGGAGAAAGAGCGCGGGAGAGTGAGC GCGAAGAGTAGTCCGTTGGGGAGGAGGCGGAGGAGGAGCGGACAACGAGG CAGAAACAAAAGCACAAACGGCGGACAGAACCAGTCGAAACAAAACAACA AACCGGAGCGGACGCACTCGAAAAAAGCGAAACGAATTTATTTCTGTGCT TAGGGCGACACTGTGTGCGTGCGCCACTGATTGTGAGTGTGTGTGTTGTG TATATTTAAACAATATTCAAAAAATCATACGCCAGACGAATAAAAAACGC GACGAAAACGAAGGCGAAGATCTCCATCTCCTCTCGCAGCGGAGCAGACA GATAAATAAAAACAGAATCCGAGACAGCAACAACAACGCGACTGTGACGC GGCAAGGTGCTGGAGGTCACTCGGTCCATTTCGCACCGCACTGAAGTATA GAAGTTTAGCAGTAAAGCACCACCCCCTTCTAACCAGTTTCAGCTTCATC CGCCCGCAAAAAACAAAAAAAAAACAAGCACGCGCGATCGGAAAACTCGA AAAAATCTACAGAGCAGCACAACTCACGCGCTTCATCGTTTTATTGCTCG CCGCCCTCTCGACTGATAAACGTCAGTTGATAAATATATATCGCATCACA TCGCATCCACACTAAAACAAATACGCCAGCAAACAAACACCAATTATTCC AATAAAGCCAGCGCCAAGTGCGAATGCGCCCTCGATTTGTATGCCATCAG CAGCACTCGGTGGCCCATTCCCACTACCAGCCCCACTCCCACTTCCATCA CCATACCCACCGCCATCCCAATCCGCCCCATCACCATCACATTTACGGCG CCACTGACGTCAGTTATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCC GAGGGAGTTATGGACTCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGG GCACTTCAACGAGACCCCATTATCCGCACTGGGCATCGAGACCCGCACCC AGCTGTCCCGCATGCTGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGC TACCAGCGGGACTGGCGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATT CGTCGACGAGAACGCCAACAATCCCATGGATCTGGTGCTGATCAGCTGGA GCCAGCGGAGTCCCCAGACCGCCAAGGTGGGCCATCTGGAACACTTCCTG GGCATTATCGATCGGTGGGACGTCTGCGACGATATCCAGGAGAATCTGGC CAAGGACACCCAGCGCTTCATCATGAAACAGGAGCAGCGACAGACTGCTC TCGTGGAGGCGTGTCCGCCGCCCCCCAGCGACTGCTTCGAGACCAACAAC AACTACAGCAGCAGCAACAACATCACAGTGGGCCAAAGTGTGCAGATCCT CAGCGACGAGGACCAGAGATGTGTACAGATGGGCCAACCGCTGCCCAGAT ACAACGCATGTGTTCTGTACGCGGAGGCAGACATCGATCATGCCACCGAG ATCATGAATAATCTAGAGTCTGAGCGATACAATCTCAGGCTATTCCTGCG CCACCGCGACATGCTAATGGGCGTTCCGTTCGAGCATGTCCAGCTATCCC ATTTCATGGCCACCCGCTGCAATCACCTGATCGTCGTGCTCACAGAGGAG TTTCTTCGGAGTCCGGAGAACACGTACCTCGTGAACTTCACCCAAAAGAT CCAGATTGAGAATCACACTCGCAAGATCATACCGATTCTGTACAAAACGG ACATGCACATACCCCAGACCCTGGGCATTTACACGCACATCAAGTACGCC GGGGACTCCAAGTTGTTCAACTTCTGGGACAAGTTGGCTCGTTCCCTACA CGATCTGGATGCCTTTTCGATCTACTCCACGCGCCAGGTGCAGACTCCCT CGCCGGTGGAGGAATCGGCTCCCCGGGTGACCACTCCCAGCATTCGGATT CAGATCAACGACAAGGATGTCACTGATATGCCAAACTACAACAGCTGCAA AGTGCCGGAGGCGGAGACCACAATCGTTTCGGTTTCCGGTGACACCGGCT CACCCCTGCCGGAGCACAAGCCGAAGAAAAAGGATCGCTTCCTGCGCAGA ATCACGCACAGCTTTGGAAAGACGGCGCGGAGCGATGGGGCCAGCGGCAA GACTCTGCGTCATGCCCACTCCGTCAGCACCATAAATGTCACGGAACGCG AGAGGACACTCAGTGCCAGCAGCTCCAACATCTCCACCACGTCGGAGAGC AAGAAGAGCTTCATCAAGTGGCAGCCGAACATCCTGAAGAAGGCCCTATT CTCGCGATCCAGCAGCAAGCTGCAGACGCCGGGCTGAGATCATAGTGTTA GGATAGCCATTCATTCGATTTCTCGATTCTTTGATTCCTTGTCGTGTGCC CAGTCTAGTTGTGGCCGCCCAGTCACCAATGTCGTCACCCTCCATGCCTA GTGATAATCTTTAGCCTAATCCTTATCAAGTCAACTAACTTAATATACTT AGACGCACTTGTTAACTTATATAAGACAACAACGAATAAAGACAATACCA CATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5194795..5196191 | 1399..1 | 6915 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5191201..5191858 | 2703..2046 | 3275 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5192990..5193280 | 1689..1399 | 1455 | 100 | Minus |
chr2R | 21145070 | chr2R | 5192497..5192684 | 2045..1858 | 925 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 5192757..5192926 | 1858..1689 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9307269..9308667 | 1399..1 | 6995 | 100 | Minus |
2R | 25286936 | 2R | 9303677..9304335 | 2704..2046 | 3295 | 100 | Minus |
2R | 25286936 | 2R | 9305467..9305757 | 1689..1399 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 9304974..9305161 | 2045..1858 | 940 | 100 | Minus |
2R | 25286936 | 2R | 9305234..9305403 | 1858..1689 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9308468..9309866 | 1399..1 | 6995 | 100 | Minus |
2R | 25260384 | 2R | 9304876..9305534 | 2704..2046 | 3295 | 100 | Minus |
2R | 25260384 | 2R | 9306666..9306956 | 1689..1399 | 1455 | 100 | Minus |
2R | 25260384 | 2R | 9306173..9306360 | 2045..1858 | 940 | 100 | Minus |
2R | 25260384 | 2R | 9306433..9306602 | 1858..1689 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6932 | 1411..1534 | 141 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6817 | 1472..1566 | 137 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2428 | 1488..1525 | 136 | 84.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2613..2653 | 1485..1525 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 1476..1525 | 133 | 74 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6816 | 1476..1525 | 133 | 74 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1576 | 1476..1525 | 132 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6753 | 1490..1525 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6849 | 1476..1525 | 126 | 76 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2911 | 1427..1525 | 125 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2401 | 1476..1525 | 124 | 72 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2476 | 1494..1525 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1556 | 1492..1526 | 121 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2522 | 1476..1526 | 120 | 70.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1122..1154 | 1492..1524 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6868 | 1476..1526 | 119 | 72.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2824 | 1479..1525 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6902 | 1406..1527 | 118 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2350 | 1492..1525 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2464..2497 | 1492..1525 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6759 | 1492..1525 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2455 | 1476..1525 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6828 | 1476..1525 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 1476..1525 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2413 | 1476..1525 | 115 | 70 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5191201..5191858 | 2046..2703 | 99 | <- | Minus |
chr2R | 5192497..5192683 | 1859..2045 | 99 | <- | Minus |
chr2R | 5192757..5192925 | 1690..1858 | 100 | <- | Minus |
chr2R | 5192990..5193279 | 1400..1689 | 100 | <- | Minus |
chr2R | 5194795..5195203 | 991..1399 | 100 | == | Minus |
chr2R | 5195281..5196191 | 1..913 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 1..1614 | 874..2487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 1..1614 | 874..2487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 1..1614 | 874..2487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 1..1614 | 874..2487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 1..1614 | 874..2487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 10..2712 | 1..2703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 10..2712 | 1..2703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 56..2758 | 1..2703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 10..2712 | 1..2703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Myd88-RA | 56..2758 | 1..2703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9303678..9304335 | 2046..2703 | 100 | <- | Minus |
2R | 9304974..9305160 | 1859..2045 | 100 | <- | Minus |
2R | 9305234..9305402 | 1690..1858 | 100 | <- | Minus |
2R | 9305467..9305756 | 1400..1689 | 100 | <- | Minus |
2R | 9307269..9308667 | 1..1399 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9303678..9304335 | 2046..2703 | 100 | <- | Minus |
2R | 9304974..9305160 | 1859..2045 | 100 | <- | Minus |
2R | 9305234..9305402 | 1690..1858 | 100 | <- | Minus |
2R | 9305467..9305756 | 1400..1689 | 100 | <- | Minus |
2R | 9307269..9308667 | 1..1399 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9303678..9304335 | 2046..2703 | 100 | <- | Minus |
2R | 9304974..9305160 | 1859..2045 | 100 | <- | Minus |
2R | 9305234..9305402 | 1690..1858 | 100 | <- | Minus |
2R | 9305467..9305756 | 1400..1689 | 100 | <- | Minus |
2R | 9307269..9308667 | 1..1399 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5191183..5191840 | 2046..2703 | 100 | <- | Minus |
arm_2R | 5192479..5192665 | 1859..2045 | 100 | <- | Minus |
arm_2R | 5192739..5192907 | 1690..1858 | 100 | <- | Minus |
arm_2R | 5192972..5193261 | 1400..1689 | 100 | <- | Minus |
arm_2R | 5194774..5196172 | 1..1399 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9304877..9305534 | 2046..2703 | 100 | <- | Minus |
2R | 9306173..9306359 | 1859..2045 | 100 | <- | Minus |
2R | 9306433..9306601 | 1690..1858 | 100 | <- | Minus |
2R | 9306666..9306955 | 1400..1689 | 100 | <- | Minus |
2R | 9308468..9309866 | 1..1399 | 100 | Minus |
Translation from 873 to 2486
> LD20892.pep MRPRFVCHQQHSVAHSHYQPHSHFHHHTHRHPNPPHHHHIYGATDVSYRR YRTAGMVVAEGVMDSGSGSGTGTGLGHFNETPLSALGIETRTQLSRMLNR KKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLISWSQRSPQTA KVGHLEHFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEACPPP PSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYA EADIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCN HLIVVLTEEFLRSPENTYLVNFTQKIQIENHTRKIIPILYKTDMHIPQTL GIYTHIKYAGDSKLFNFWDKLARSLHDLDAFSIYSTRQVQTPSPVEESAP RVTTPSIRIQINDKDVTDMPNYNSCKVPEAETTIVSVSGDTGSPLPEHKP KKKDRFLRRITHSFGKTARSDGASGKTLRHAHSVSTINVTERERTLSASS SNISTTSESKKSFIKWQPNILKKALFSRSSSKLQTPG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13086-PA | 537 | GF13086-PA | 1..537 | 1..537 | 2356 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10565-PA | 545 | GG10565-PA | 1..545 | 1..537 | 2778 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21551-PA | 456 | GH21551-PA | 14..456 | 78..537 | 1407 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Myd88-PC | 537 | CG2078-PC | 1..537 | 1..537 | 2850 | 100 | Plus |
Myd88-PB | 537 | CG2078-PB | 1..537 | 1..537 | 2850 | 100 | Plus |
Myd88-PA | 537 | CG2078-PA | 1..537 | 1..537 | 2850 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19523-PA | 454 | GI19523-PA | 2..453 | 62..536 | 1446 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16895-PA | 474 | GL16895-PA | 8..474 | 74..537 | 1914 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15226-PB | 528 | GA15226-PB | 1..528 | 1..537 | 1961 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20612-PA | 539 | GM20612-PA | 1..539 | 1..537 | 2895 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10085-PA | 537 | GD10085-PA | 1..537 | 1..537 | 2916 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21092-PA | 465 | GJ21092-PA | 18..464 | 78..536 | 1492 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19644-PA | 582 | GK19644-PA | 1..578 | 1..535 | 1679 | 61.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22390-PA | 535 | GE22390-PA | 1..534 | 1..536 | 2400 | 89.6 | Plus |
Translation from 873 to 2486
> LD20892.hyp MRPRFVCHQQHSVAHSHYQPHSHFHHHTHRHPNPPHHHHIYGATDVSYRR YRTAGMVVAEGVMDSGSGSGTGTGLGHFNETPLSALGIETRTQLSRMLNR KKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLISWSQRSPQTA KVGHLEHFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEACPPP PSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYA EADIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCN HLIVVLTEEFLRSPENTYLVNFTQKIQIENHTRKIIPILYKTDMHIPQTL GIYTHIKYAGDSKLFNFWDKLARSLHDLDAFSIYSTRQVQTPSPVEESAP RVTTPSIRIQINDKDVTDMPNYNSCKVPEAETTIVSVSGDTGSPLPEHKP KKKDRFLRRITHSFGKTARSDGASGKTLRHAHSVSTINVTERERTLSASS SNISTTSESKKSFIKWQPNILKKALFSRSSSKLQTPG*