Clone LD20901 Report

Search the DGRC for LD20901

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:1
Vector:pBS SK-
Associated Gene/TranscriptApepP-RA
Protein status:LD20901.pep: gold
Preliminary Size:1921
Sequenced Size:2098

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6291 2001-01-01 Release 2 assignment
CG6291 2001-10-10 Blastp of sequenced clone
CG6291 2003-01-01 Sim4 clustering to Release 3
ApepP 2008-04-29 Release 5.5 accounting
ApepP 2008-08-15 Release 5.9 accounting
ApepP 2008-12-18 5.12 accounting

Clone Sequence Records

LD20901.complete Sequence

2098 bp (2098 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061297

> LD20901.complete
CGATATGAAATAATATAGTTCAGCATTTTTGACGTGCTATTAATTGCAAA
ATTGAATGTGTCAGTGCAAAAAGATTATAAAATATTTGCACCCTGTAGTT
TAAACAATAGTTTGACAGCCTTTTTATTTTGCTGCCATTGAGGAACCACA
ATGAAGAGGAGCACCACCCAAATTCTGACCAGGTTGAGGGAGCTAATGCT
CCGCGCCCAGGTGGGCGACTCCTGCGGCATATCGGCATACATTGTGCCCT
CGGACGACGCCCATCAGTCGGAGTACCAGTGCCAGCATGACGAGCGACGC
TCCTTTGTGAGTGGTTTCGATGGATCCGCTGGCACGGCGGTGATAACGAC
GGAGACCGCACTGCTGTGGACCGACGGTCGTTACTATCAGCAGGCGGAGA
AGCAGCTGGACTCCAATTGGGTTCTAATGCGGGATGGTCTGAGCGCCACC
CCGTCGATTGGCGCCTGGCTGGCGAAGAATCTGCCCAAGGGCAGCTTTGT
GGGCGTGGATCCTCGCCTGTTGTCGTTCCGCGTATGGAAACCCATCGAAA
CGGAACTAAGCTCCGCGGAATGCCAGCTGGTGCCCATCGAAGGCAACCTC
ATCGACGAGGTCTGGGGTGAGGATCAGCCACCGCAAACCTCAAACAAGAT
TATAACCCTGAAACTAGAACATTCTGGCGTAACTATCGCCAAAAAATGGG
ACGTGGTGCGCCAGCAGTTGAAGGAGAAGAATGCTGATGCCCTGGTGGTC
AGTGCTCTCGATGAAATCGCTTGGTTCTTGAACCTACGCGGCTCGGACAT
TGACTTCAACCCCGTCTTCTTCTCCTACTTGATTGTGACCAACGATGAAC
TACTGCTCTTTGTGGACTCTGGCAAATTGCCCACTGATTTTGTGCAGCAT
CAAAAGGAGAACAATGTGCAGATAAGCGTTTTGCCTTACGCCTCAATTGG
CATTGAAATCAGTAAGATTGTGTCGACCAGGGAGTCAAAGATCTGGATAG
CACCCACCAGCAGCTACTATCTAACTGCTTTGATACCCAAGTCACGTAGA
ATTCAGGAGGTAACGCCGATTTGTGTGCTGAAGGCCATTAAGAACGATGT
CGAGATCGCAGGCTTCATCAACAGCCACATTCGCGATGGAGTCGCTTTGT
GTCAGTATTTCGCCTGGCTTGAGGATCAAGTGAATAAGGGTGCGGAAGTC
GATGAAATGTCTGGTGCCGATAAACTCGAGTCCTTCCGGTCGACAAAGGA
TAAGTACATGGGCCTTAGCTTCACCACAATTAGTGCTTCGGGACCCAACG
GCTCTGTTATTCACTATCACCCAAAGAAGGAAACCAACAGGAAGATAAAT
GACAAAGAGATTTATCTGTGTGATTCCGGAGCTCAATACTTGGATGGTAC
TACGGATGTGACGAGGACCCTTCACTTCGGTGAACCCACTGAGTTTCAGA
AGGAAGCCTACACTCGCGTTTTAAAGGGCCAACTGAGCTTCGGCTCCACC
GTATTCCCAGCTAAGGTTAAGGGACAGGTTCTTGACACTCTAGCGAGGAA
GGCCCTGTGGGACGTCGGTTTGGACTACGGACACGGAACCGGCCATGGAG
TAGGTCACTTCCTAAATGTCCACGAAGGTCCCATGGGCGTAGGAATTCGA
CTGATGCCCGACGATCCTGGTCTCCAGGCGAACATGTTTATTTCCAATGA
GCCTGGTTTCTACCAGGACGGAGAGTTTGGCATCCGTGTCGAGGATATTG
TTCAAATTGTGCCAGGCCAGGTGGCACACAATTTCTCCAACCGAGGCGCC
CTCACATTCAAAACCATCACCATGTGCCCGAAGCAAACGAAAATGATTAA
AAAGGAACTTCTATCGGATGCGGAAGTAAAGCTGCTCAACAGCTATCATC
AACAAGTCTGGGACACTCTTTCCCCAATCCTATCTCGCGAAGGAGACGAA
TTTACTCTGTCCTGGCTCAAAAAGGAAGTTCAGCCCATTTAATTGCATTT
TTAACCCGTTATTTCGGTCATCTTTAACTAATATTCTTTCCCATGCATAC
ACTTACTCTTTTCTCAAGACTAAAATATTAAAAAAAAAAAAAAAAAAA

LD20901.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
ApepP-RA 2140 ApepP-RA 3..2091 1..2089 10445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16906891..16908846 2079..124 9690 99.7 Minus
chr2L 23010047 chr2L 16908971..16909093 123..1 615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16908219..16910184 2089..124 9830 100 Minus
2L 23513712 2L 16910309..16910431 123..1 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16908219..16910184 2089..124 9830 100 Minus
2L 23513712 2L 16910309..16910431 123..1 615 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:26:46 has no hits.

LD20901.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:24 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16906891..16908846 124..2079 99 <- Minus
chr2L 16908971..16909093 1..123 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:07 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..1842 151..1992 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:21 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RB 1..1842 151..1992 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:27 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..1842 151..1992 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:13 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..1842 151..1992 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:31 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..1842 151..1992 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:12 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..2079 1..2079 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:21 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..2079 1..2079 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:27 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..2066 14..2079 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:13 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..2079 1..2079 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:31 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
ApepP-RA 1..2066 14..2079 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:24 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16908229..16910184 124..2079 100 <- Minus
2L 16910309..16910431 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:24 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16908229..16910184 124..2079 100 <- Minus
2L 16910309..16910431 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:24 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16908229..16910184 124..2079 100 <- Minus
2L 16910309..16910431 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:27 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16908229..16910184 124..2079 100 <- Minus
arm_2L 16910309..16910431 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:44 Download gff for LD20901.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16910309..16910431 1..123 100   Minus
2L 16908229..16910184 124..2079 100 <- Minus

LD20901.pep Sequence

Translation from 150 to 1991

> LD20901.pep
MKRSTTQILTRLRELMLRAQVGDSCGISAYIVPSDDAHQSEYQCQHDERR
SFVSGFDGSAGTAVITTETALLWTDGRYYQQAEKQLDSNWVLMRDGLSAT
PSIGAWLAKNLPKGSFVGVDPRLLSFRVWKPIETELSSAECQLVPIEGNL
IDEVWGEDQPPQTSNKIITLKLEHSGVTIAKKWDVVRQQLKEKNADALVV
SALDEIAWFLNLRGSDIDFNPVFFSYLIVTNDELLLFVDSGKLPTDFVQH
QKENNVQISVLPYASIGIEISKIVSTRESKIWIAPTSSYYLTALIPKSRR
IQEVTPICVLKAIKNDVEIAGFINSHIRDGVALCQYFAWLEDQVNKGAEV
DEMSGADKLESFRSTKDKYMGLSFTTISASGPNGSVIHYHPKKETNRKIN
DKEIYLCDSGAQYLDGTTDVTRTLHFGEPTEFQKEAYTRVLKGQLSFGST
VFPAKVKGQVLDTLARKALWDVGLDYGHGTGHGVGHFLNVHEGPMGVGIR
LMPDDPGLQANMFISNEPGFYQDGEFGIRVEDIVQIVPGQVAHNFSNRGA
LTFKTITMCPKQTKMIKKELLSDAEVKLLNSYHQQVWDTLSPILSREGDE
FTLSWLKKEVQPI*

LD20901.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15114-PA 613 GF15114-PA 2..613 3..613 2851 86.3 Plus
Dana\GF17113-PA 705 GF17113-PA 45..660 1..613 849 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21760-PA 613 GG21760-PA 1..613 1..613 3212 97.1 Plus
Dere\GG19138-PA 702 GG19138-PA 52..660 9..613 834 31.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16927-PA 612 GH16927-PA 1..612 1..613 2390 72 Plus
Dgri\GH18704-PA 706 GH18704-PA 56..664 9..613 818 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
ApepP-PB 613 CG6291-PB 1..613 1..613 3199 100 Plus
ApepP-PA 613 CG6291-PA 1..613 1..613 3199 100 Plus
CG6225-PB 704 CG6225-PB 52..660 9..613 830 31.4 Plus
CG6225-PA 704 CG6225-PA 52..660 9..613 830 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13683-PA 610 GI13683-PA 2..610 3..613 2395 71.8 Plus
Dmoj\GI22851-PA 713 GI22851-PA 58..666 9..613 801 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21958-PA 598 GL21958-PA 1..598 16..613 2671 79.1 Plus
Dper\GL27147-PA 699 GL27147-PA 52..660 9..613 835 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27324-PA 612 GA27324-PA 2..612 3..613 2718 79.1 Plus
Dpse\GA19455-PA 699 GA19455-PA 52..660 9..613 828 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17144-PA 329 GM17144-PA 1..324 1..362 1572 84.3 Plus
Dsec\GM17145-PA 244 GM17145-PA 1..244 370..613 1313 98.8 Plus
Dsec\GM24054-PA 702 GM24054-PA 52..660 9..613 834 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21885-PA 613 GD21885-PA 1..613 1..613 3245 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14022-PA 610 GJ14022-PA 2..610 3..613 2409 73.2 Plus
Dvir\GJ14152-PA 703 GJ14152-PA 52..660 9..613 825 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11147-PA 612 GK11147-PA 2..612 3..613 2633 78.9 Plus
Dwil\GK13723-PA 703 GK13723-PA 50..660 11..613 805 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13150-PA 613 GE13150-PA 1..613 1..613 3122 95.9 Plus
Dyak\GE26212-PA 702 GE26212-PA 52..660 9..613 826 30.9 Plus

LD20901.hyp Sequence

Translation from 150 to 1991

> LD20901.hyp
MKRSTTQILTRLRELMLRAQVGDSCGISAYIVPSDDAHQSEYQCQHDERR
SFVSGFDGSAGTAVITTETALLWTDGRYYQQAEKQLDSNWVLMRDGLSAT
PSIGAWLAKNLPKGSFVGVDPRLLSFRVWKPIETELSSAECQLVPIEGNL
IDEVWGEDQPPQTSNKIITLKLEHSGVTIAKKWDVVRQQLKEKNADALVV
SALDEIAWFLNLRGSDIDFNPVFFSYLIVTNDELLLFVDSGKLPTDFVQH
QKENNVQISVLPYASIGIEISKIVSTRESKIWIAPTSSYYLTALIPKSRR
IQEVTPICVLKAIKNDVEIAGFINSHIRDGVALCQYFAWLEDQVNKGAEV
DEMSGADKLESFRSTKDKYMGLSFTTISASGPNGSVIHYHPKKETNRKIN
DKEIYLCDSGAQYLDGTTDVTRTLHFGEPTEFQKEAYTRVLKGQLSFGST
VFPAKVKGQVLDTLARKALWDVGLDYGHGTGHGVGHFLNVHEGPMGVGIR
LMPDDPGLQANMFISNEPGFYQDGEFGIRVEDIVQIVPGQVAHNFSNRGA
LTFKTITMCPKQTKMIKKELLSDAEVKLLNSYHQQVWDTLSPILSREGDE
FTLSWLKKEVQPI*

LD20901.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
ApepP-PB 613 CG6291-PB 1..613 1..613 3199 100 Plus
ApepP-PA 613 CG6291-PA 1..613 1..613 3199 100 Plus
CG6225-PB 704 CG6225-PB 52..660 9..613 830 31.4 Plus
CG6225-PA 704 CG6225-PA 52..660 9..613 830 31.4 Plus