BDGP Sequence Production Resources |
Search the DGRC for LD20955
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 209 |
Well: | 55 |
Vector: | pBS SK- |
Associated Gene/Transcript | DNA-ligI-RA |
Protein status: | LD20955.pep: gold |
Sequenced Size: | 2389 |
Gene | Date | Evidence |
---|---|---|
CG5602 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5602 | 2004-10-13 | Blastp of sequenced clone |
CG5602 | 2008-04-29 | Release 5.5 accounting |
CG5602 | 2008-08-15 | Release 5.9 accounting |
CG5602 | 2008-12-18 | 5.12 accounting |
2389 bp (2389 high quality bases) assembled on 2004-10-13
GenBank Submission: BT016103
> LD20955.complete ACTGGCGGGAACTAATTGCATTGCAATTTGTATTTATTTGAACACAGAAT TGCCACAAAATGCAAAAGTCTATAACCTCCTTCTTCAAGAAGAAATCCGA TGCCACCGACAGCCCCTCGCCGCCCAAGAAAGTTCCTAAGATTGATGCGA AGACCGAACTCCCAGATGAACCCCACATCAAGAGCGAAAGTGCCTCCCCG GAAACTAAGCCCAAGGTAGAACCTATGTCTGTGGATTCCGAGGAGAAGAC AAGTCCGGTGAAAAATGTTAAGAAGGAACCAAAGGAAGTCGATGACAAGA CCACTGACAAGAAGGTCACAACCATAGGTCTCAACTCCACTGCCGCTACT AAGGAGGATGTGGAAAACTACGATCCATCCGCCGACTCCTATCATCCGCT CAAGAATGCCTACTGGAAGGACAAAAAGGTCACTCCCTACTTGGCACTGG CCCGCACATTTCAAGTAATCGAGGAGACCAAAGGCCGGCTCAAGATGATC GACACGCTGAGCAACTTCTTCTGCTCTGTGATGCTGGTCAGTCCGGAGGA TCTTGTGCCCAGCGTCTACCTCAGCATCAACCAACTGGCGCCCGCCTACG AGGGACTGGAGCTGGGCGTTGCCGAGACCACCTTGATGAAGGCCATTTGC AAGGCAACGGGGCGTAATTTGGCTCACATTAAATCGCAGACGCAGCTAAC CGGGGATCTGGGCATCGTGGCCGAGCAGTCGCGCGTTTCACAGCGCATGA TGTTCCAGCCAGCGCCTCTGAATGTGAGGGATGTGTTCCGGAAGCTACGC GAAATAGCCAAGCTATCCGGTCAGTCGAAAATGGACCTGGTGTACAATAT GTTTGTGGCCTGTCGATCGTCGGAGGCTCGCTTCTTTATCCGTTCATTGA TTGGCAAGCTAAGAATTGGCATTGCAGAGCAGAGTTTGCTCACAGCGCTG GCCATTGGTTTGGTGAAAAAGAACCACATCGATGATTGCAAGGCTAGCAA GGTGCCGGATGTGTATAAGGATGAAATAGTCGACACCACTTTGCTGTTGA AAACTGCATACTGTCAGTGTCCCAACTACGATATCATTATACCGGCCATT CTAAAGTACGATATTAAGGAGCTGCAGGAACGCTGCCCCATGCATCCCGG CATGCCGCTGAGGCCCATGCTCGCCCAGCCCACCAAGGGGGTCCATGAGG TATTTGAGAGATTCGGCGGCATGCAAATCACCTGCGAGTGGAAATACGAT GGAGAGCGGGCCCAAATCCACCGCAACGAGAAGGGGGAGATCAGCATATT CTCGCGCAACTCCGAGAACAACACGGCAAAATATCCGGATTTGATTGCCA GGAGCACTGCCTTGCTCAAGGGCGACGTAAAGTCCTACATCATAGACAGC GAAATTGTGGCCTGGGATGTGGAGCGCAAGCAGATTCTGCCGTTTCAGGT GCTCAGCACGCGCAAACGGAAGAACGTTGATATCGAGGAAATCAAGGTCC AAGTCTGTGTCTACATCTTCGATCTGCTGTACATCAATGGCACTGCTCTG GTGACCAAAAACCTGTCGGAGCGTCGCAAGCTCCTGTTGGAGCACTTTCA AGAGGTCGAGGGCGAGTGGAAGTTCGCCACTGCTCTGGACACCAATGACA TAGACGAAGTGCAGCAGTTCCTGGAGGAGTCTATCAAAGGAAATTGCGAG GGCCTCATGGTCAAAACATTGGATGAGGAGGCCACCTATGAGATTGCCAA GAGATCCCGCAACTGGCTGAAATTGAAGAAGGACTACCTATCCAATGTGG GCGACTCACTCGATTTGGTGGTCATTGGTGGCTACAAAGGCAAGGGCCGG CGAACTGGAACCTACGGAGGATTTTTGCTTGCCTGCTATGACACCGAAAA CGAGGAGTATCAGAGCATATGCAAGATTGGAACTGGCTTCACTGATGAGG ACCTGCAAACGCATTCCGAGTTTTTGGGCAAACATGTGACCAGCGCCGCC AAATCCTACTACAGATACGACCCCAGCCTGGAGCCCGATCACTGGTTTGA ACCGGTCCAGGTGTGGGAAGTCAAATGCGCGGATCTGTCGCTCAGTCCGA TCCACCGAGCAGCCATTGGCATTGTGGACGGAGAGCGGGGCATTTCCTTG AGATTCCCTCGGTTCATTCGGATACGCGACGACAAGAATAGCGAAAACGC AACGGACGCCAATCAGGTGGCCCACATGTACCAGTCGCAGGATCAGGTTA AAAATAATCAAAAGTCGAGCACACAAATGGAGATGGAGGACGAGTTCTAC TGACCGGTCTGCTCCAGCCATGTGTACACGATTTATTTAACAATAAAAGT CTGTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19778547..19779220 | 1688..2361 | 3370 | 100 | Plus |
chr2R | 21145070 | chr2R | 19777182..19777814 | 431..1063 | 3165 | 100 | Plus |
chr2R | 21145070 | chr2R | 19777869..19778496 | 1063..1690 | 3140 | 100 | Plus |
chr2R | 21145070 | chr2R | 19776831..19777121 | 140..430 | 1455 | 100 | Plus |
chr2R | 21145070 | chr2R | 19776580..19776655 | 1..76 | 380 | 100 | Plus |
chr2R | 21145070 | chr2R | 19776713..19776776 | 77..140 | 320 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23892504..23893178 | 1688..2362 | 3375 | 100 | Plus |
2R | 25286936 | 2R | 23891139..23891771 | 431..1063 | 3165 | 100 | Plus |
2R | 25286936 | 2R | 23891826..23892453 | 1063..1690 | 3140 | 100 | Plus |
2R | 25286936 | 2R | 23890788..23891078 | 140..430 | 1455 | 100 | Plus |
2R | 25286936 | 2R | 23890537..23890612 | 1..76 | 380 | 100 | Plus |
2R | 25286936 | 2R | 23890670..23890733 | 77..140 | 320 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23893703..23894377 | 1688..2362 | 3375 | 100 | Plus |
2R | 25260384 | 2R | 23892338..23892970 | 431..1063 | 3165 | 100 | Plus |
2R | 25260384 | 2R | 23893025..23893652 | 1063..1690 | 3140 | 100 | Plus |
2R | 25260384 | 2R | 23891987..23892277 | 140..430 | 1455 | 100 | Plus |
2R | 25260384 | 2R | 23891736..23891811 | 1..76 | 380 | 100 | Plus |
2R | 25260384 | 2R | 23891869..23891932 | 77..140 | 320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19776580..19776655 | 1..76 | 100 | -> | Plus |
chr2R | 19776713..19776775 | 77..139 | 100 | -> | Plus |
chr2R | 19776831..19777121 | 140..430 | 100 | -> | Plus |
chr2R | 19777182..19777814 | 431..1063 | 100 | -> | Plus |
chr2R | 19777870..19778495 | 1064..1689 | 100 | -> | Plus |
chr2R | 19778549..19779220 | 1690..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2244 | 60..2303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2244 | 60..2303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNA-ligI-RA | 1..2244 | 60..2303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2244 | 60..2303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNA-ligI-RA | 1..2244 | 60..2303 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2360 | 2..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2360 | 2..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNA-ligI-RA | 26..2386 | 1..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5602-RA | 1..2360 | 2..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNA-ligI-RA | 26..2386 | 1..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23890537..23890612 | 1..76 | 100 | -> | Plus |
2R | 23890670..23890732 | 77..139 | 100 | -> | Plus |
2R | 23890788..23891078 | 140..430 | 100 | -> | Plus |
2R | 23891139..23891771 | 431..1063 | 100 | -> | Plus |
2R | 23891827..23892452 | 1064..1689 | 100 | -> | Plus |
2R | 23892506..23893177 | 1690..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23890537..23890612 | 1..76 | 100 | -> | Plus |
2R | 23890670..23890732 | 77..139 | 100 | -> | Plus |
2R | 23890788..23891078 | 140..430 | 100 | -> | Plus |
2R | 23891139..23891771 | 431..1063 | 100 | -> | Plus |
2R | 23891827..23892452 | 1064..1689 | 100 | -> | Plus |
2R | 23892506..23893177 | 1690..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23890537..23890612 | 1..76 | 100 | -> | Plus |
2R | 23890670..23890732 | 77..139 | 100 | -> | Plus |
2R | 23890788..23891078 | 140..430 | 100 | -> | Plus |
2R | 23891139..23891771 | 431..1063 | 100 | -> | Plus |
2R | 23891827..23892452 | 1064..1689 | 100 | -> | Plus |
2R | 23892506..23893177 | 1690..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19778060..19778135 | 1..76 | 100 | -> | Plus |
arm_2R | 19778193..19778255 | 77..139 | 100 | -> | Plus |
arm_2R | 19778311..19778601 | 140..430 | 100 | -> | Plus |
arm_2R | 19778662..19779294 | 431..1063 | 100 | -> | Plus |
arm_2R | 19779350..19779975 | 1064..1689 | 100 | -> | Plus |
arm_2R | 19780029..19780700 | 1690..2361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23892005..23892295 | 140..430 | 100 | -> | Plus |
2R | 23892356..23892988 | 431..1063 | 100 | -> | Plus |
2R | 23893044..23893669 | 1064..1689 | 100 | -> | Plus |
2R | 23893723..23894394 | 1690..2361 | 100 | Plus | |
2R | 23891754..23891829 | 1..76 | 100 | -> | Plus |
2R | 23891887..23891949 | 77..139 | 100 | -> | Plus |
Translation from 59 to 2302
> LD20955.pep MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12871-PA | 749 | GF12871-PA | 1..749 | 1..747 | 3486 | 86.9 | Plus |
Dana\GF17047-PA | 788 | GF17047-PA | 249..604 | 366..733 | 411 | 29.7 | Plus |
Dana\GF21760-PA | 924 | GF21760-PA | 138..636 | 234..744 | 256 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22898-PA | 747 | GG22898-PA | 1..747 | 1..747 | 3893 | 96.4 | Plus |
Dere\GG17130-PA | 805 | GG17130-PA | 254..599 | 366..723 | 419 | 31.1 | Plus |
Dere\GG19495-PA | 927 | GG19495-PA | 59..599 | 162..709 | 246 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20192-PA | 674 | GH20192-PA | 11..674 | 85..747 | 3027 | 83.7 | Plus |
Dgri\GH20153-PA | 799 | GH20153-PA | 239..596 | 366..732 | 425 | 30.5 | Plus |
Dgri\GH11911-PA | 922 | GH11911-PA | 135..632 | 233..740 | 269 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNAlig1-PA | 747 | CG5602-PA | 1..747 | 1..747 | 3870 | 100 | Plus |
DNAlig3-PA | 806 | CG17227-PA | 254..609 | 366..733 | 400 | 30.3 | Plus |
DNAlig4-PA | 918 | CG12176-PA | 128..599 | 224..709 | 256 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20719-PA | 736 | GI20719-PA | 1..736 | 1..747 | 3157 | 78.3 | Plus |
Dmoj\GI24375-PA | 793 | GI24375-PA | 236..591 | 366..733 | 441 | 31.8 | Plus |
Dmoj\GI15517-PA | 926 | GI15517-PA | 259..637 | 361..740 | 239 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11174-PA | 744 | GL11174-PA | 1..744 | 1..747 | 3380 | 84.4 | Plus |
Dper\GL27179-PA | 788 | GL27179-PA | 236..591 | 366..733 | 430 | 31.5 | Plus |
Dper\GL22420-PA | 916 | GL22420-PA | 119..597 | 216..709 | 257 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18999-PA | 744 | GA18999-PA | 1..744 | 1..747 | 3386 | 84.5 | Plus |
Dpse\GA26759-PA | 788 | GA26759-PA | 236..591 | 366..733 | 426 | 31.5 | Plus |
Dpse\GA11455-PA | 916 | GA11455-PA | 119..597 | 216..709 | 254 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16058-PA | 747 | GM16058-PA | 1..747 | 1..747 | 3964 | 98.3 | Plus |
Dsec\GM13668-PA | 656 | GM13668-PA | 317..656 | 408..747 | 1842 | 99.4 | Plus |
Dsec\GM13668-PA | 656 | GM13668-PA | 1..317 | 1..317 | 1613 | 96.5 | Plus |
Dsec\GM26013-PA | 783 | GM26013-PA | 234..589 | 366..733 | 421 | 31.5 | Plus |
Dsec\GM17599-PA | 671 | GM17599-PA | 11..515 | 224..744 | 256 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11806-PA | 713 | GD11806-PA | 1..713 | 1..747 | 3677 | 92.1 | Plus |
Dsim\GD20571-PA | 362 | GD20571-PA | 234..360 | 366..498 | 163 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20456-PA | 667 | GJ20456-PA | 5..667 | 85..747 | 3132 | 86.3 | Plus |
Dvir\GJ24382-PA | 818 | GJ24382-PA | 258..615 | 366..732 | 441 | 30.8 | Plus |
Dvir\GJ19276-PA | 992 | GJ19276-PA | 253..631 | 361..740 | 259 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15713-PA | 744 | GK15713-PA | 1..744 | 1..747 | 3208 | 82.1 | Plus |
Dwil\GK11194-PA | 796 | GK11194-PA | 232..583 | 366..726 | 438 | 31.3 | Plus |
Dwil\GK10206-PA | 935 | GK10206-PA | 189..649 | 272..744 | 261 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14336-PA | 747 | GE14336-PA | 1..747 | 1..747 | 3917 | 96.9 | Plus |
Dyak\GE24522-PA | 785 | GE24522-PA | 234..585 | 366..726 | 417 | 29.8 | Plus |
Dyak\GE16147-PA | 918 | GE16147-PA | 59..599 | 162..709 | 249 | 23.7 | Plus |
Translation from 59 to 2302
> LD20955.hyp MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNA-ligI-PA | 747 | CG5602-PA | 1..747 | 1..747 | 3870 | 100 | Plus |
lig3-PA | 806 | CG17227-PA | 254..609 | 366..733 | 400 | 30.3 | Plus |
Lig4-PA | 918 | CG12176-PA | 128..599 | 224..709 | 256 | 23.4 | Plus |