Clone LD20955 Report

Search the DGRC for LD20955

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:55
Vector:pBS SK-
Associated Gene/TranscriptDNA-ligI-RA
Protein status:LD20955.pep: gold
Sequenced Size:2389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5602 2003-01-01 Sim4 clustering to Release 3
CG5602 2004-10-13 Blastp of sequenced clone
CG5602 2008-04-29 Release 5.5 accounting
CG5602 2008-08-15 Release 5.9 accounting
CG5602 2008-12-18 5.12 accounting

Clone Sequence Records

LD20955.complete Sequence

2389 bp (2389 high quality bases) assembled on 2004-10-13

GenBank Submission: BT016103

> LD20955.complete
ACTGGCGGGAACTAATTGCATTGCAATTTGTATTTATTTGAACACAGAAT
TGCCACAAAATGCAAAAGTCTATAACCTCCTTCTTCAAGAAGAAATCCGA
TGCCACCGACAGCCCCTCGCCGCCCAAGAAAGTTCCTAAGATTGATGCGA
AGACCGAACTCCCAGATGAACCCCACATCAAGAGCGAAAGTGCCTCCCCG
GAAACTAAGCCCAAGGTAGAACCTATGTCTGTGGATTCCGAGGAGAAGAC
AAGTCCGGTGAAAAATGTTAAGAAGGAACCAAAGGAAGTCGATGACAAGA
CCACTGACAAGAAGGTCACAACCATAGGTCTCAACTCCACTGCCGCTACT
AAGGAGGATGTGGAAAACTACGATCCATCCGCCGACTCCTATCATCCGCT
CAAGAATGCCTACTGGAAGGACAAAAAGGTCACTCCCTACTTGGCACTGG
CCCGCACATTTCAAGTAATCGAGGAGACCAAAGGCCGGCTCAAGATGATC
GACACGCTGAGCAACTTCTTCTGCTCTGTGATGCTGGTCAGTCCGGAGGA
TCTTGTGCCCAGCGTCTACCTCAGCATCAACCAACTGGCGCCCGCCTACG
AGGGACTGGAGCTGGGCGTTGCCGAGACCACCTTGATGAAGGCCATTTGC
AAGGCAACGGGGCGTAATTTGGCTCACATTAAATCGCAGACGCAGCTAAC
CGGGGATCTGGGCATCGTGGCCGAGCAGTCGCGCGTTTCACAGCGCATGA
TGTTCCAGCCAGCGCCTCTGAATGTGAGGGATGTGTTCCGGAAGCTACGC
GAAATAGCCAAGCTATCCGGTCAGTCGAAAATGGACCTGGTGTACAATAT
GTTTGTGGCCTGTCGATCGTCGGAGGCTCGCTTCTTTATCCGTTCATTGA
TTGGCAAGCTAAGAATTGGCATTGCAGAGCAGAGTTTGCTCACAGCGCTG
GCCATTGGTTTGGTGAAAAAGAACCACATCGATGATTGCAAGGCTAGCAA
GGTGCCGGATGTGTATAAGGATGAAATAGTCGACACCACTTTGCTGTTGA
AAACTGCATACTGTCAGTGTCCCAACTACGATATCATTATACCGGCCATT
CTAAAGTACGATATTAAGGAGCTGCAGGAACGCTGCCCCATGCATCCCGG
CATGCCGCTGAGGCCCATGCTCGCCCAGCCCACCAAGGGGGTCCATGAGG
TATTTGAGAGATTCGGCGGCATGCAAATCACCTGCGAGTGGAAATACGAT
GGAGAGCGGGCCCAAATCCACCGCAACGAGAAGGGGGAGATCAGCATATT
CTCGCGCAACTCCGAGAACAACACGGCAAAATATCCGGATTTGATTGCCA
GGAGCACTGCCTTGCTCAAGGGCGACGTAAAGTCCTACATCATAGACAGC
GAAATTGTGGCCTGGGATGTGGAGCGCAAGCAGATTCTGCCGTTTCAGGT
GCTCAGCACGCGCAAACGGAAGAACGTTGATATCGAGGAAATCAAGGTCC
AAGTCTGTGTCTACATCTTCGATCTGCTGTACATCAATGGCACTGCTCTG
GTGACCAAAAACCTGTCGGAGCGTCGCAAGCTCCTGTTGGAGCACTTTCA
AGAGGTCGAGGGCGAGTGGAAGTTCGCCACTGCTCTGGACACCAATGACA
TAGACGAAGTGCAGCAGTTCCTGGAGGAGTCTATCAAAGGAAATTGCGAG
GGCCTCATGGTCAAAACATTGGATGAGGAGGCCACCTATGAGATTGCCAA
GAGATCCCGCAACTGGCTGAAATTGAAGAAGGACTACCTATCCAATGTGG
GCGACTCACTCGATTTGGTGGTCATTGGTGGCTACAAAGGCAAGGGCCGG
CGAACTGGAACCTACGGAGGATTTTTGCTTGCCTGCTATGACACCGAAAA
CGAGGAGTATCAGAGCATATGCAAGATTGGAACTGGCTTCACTGATGAGG
ACCTGCAAACGCATTCCGAGTTTTTGGGCAAACATGTGACCAGCGCCGCC
AAATCCTACTACAGATACGACCCCAGCCTGGAGCCCGATCACTGGTTTGA
ACCGGTCCAGGTGTGGGAAGTCAAATGCGCGGATCTGTCGCTCAGTCCGA
TCCACCGAGCAGCCATTGGCATTGTGGACGGAGAGCGGGGCATTTCCTTG
AGATTCCCTCGGTTCATTCGGATACGCGACGACAAGAATAGCGAAAACGC
AACGGACGCCAATCAGGTGGCCCACATGTACCAGTCGCAGGATCAGGTTA
AAAATAATCAAAAGTCGAGCACACAAATGGAGATGGAGGACGAGTTCTAC
TGACCGGTCTGCTCCAGCCATGTGTACACGATTTATTTAACAATAAAAGT
CTGTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD20955.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5602-RA 2386 CG5602-RA 26..2386 1..2361 11805 100 Plus
Upf3-RB 1811 Upf3-RB 1697..1811 2362..2248 575 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19778547..19779220 1688..2361 3370 100 Plus
chr2R 21145070 chr2R 19777182..19777814 431..1063 3165 100 Plus
chr2R 21145070 chr2R 19777869..19778496 1063..1690 3140 100 Plus
chr2R 21145070 chr2R 19776831..19777121 140..430 1455 100 Plus
chr2R 21145070 chr2R 19776580..19776655 1..76 380 100 Plus
chr2R 21145070 chr2R 19776713..19776776 77..140 320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23892504..23893178 1688..2362 3375 100 Plus
2R 25286936 2R 23891139..23891771 431..1063 3165 100 Plus
2R 25286936 2R 23891826..23892453 1063..1690 3140 100 Plus
2R 25286936 2R 23890788..23891078 140..430 1455 100 Plus
2R 25286936 2R 23890537..23890612 1..76 380 100 Plus
2R 25286936 2R 23890670..23890733 77..140 320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23893703..23894377 1688..2362 3375 100 Plus
2R 25260384 2R 23892338..23892970 431..1063 3165 100 Plus
2R 25260384 2R 23893025..23893652 1063..1690 3140 100 Plus
2R 25260384 2R 23891987..23892277 140..430 1455 100 Plus
2R 25260384 2R 23891736..23891811 1..76 380 100 Plus
2R 25260384 2R 23891869..23891932 77..140 320 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:29:15 has no hits.

LD20955.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:26 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19776580..19776655 1..76 100 -> Plus
chr2R 19776713..19776775 77..139 100 -> Plus
chr2R 19776831..19777121 140..430 100 -> Plus
chr2R 19777182..19777814 431..1063 100 -> Plus
chr2R 19777870..19778495 1064..1689 100 -> Plus
chr2R 19778549..19779220 1690..2361 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:10 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2244 60..2303 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:21 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2244 60..2303 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:47 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
DNA-ligI-RA 1..2244 60..2303 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:16 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2244 60..2303 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:08 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
DNA-ligI-RA 1..2244 60..2303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:43 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2360 2..2361 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:21 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2360 2..2361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:47 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
DNA-ligI-RA 26..2386 1..2361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:16 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
CG5602-RA 1..2360 2..2361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:08 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
DNA-ligI-RA 26..2386 1..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:26 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23890537..23890612 1..76 100 -> Plus
2R 23890670..23890732 77..139 100 -> Plus
2R 23890788..23891078 140..430 100 -> Plus
2R 23891139..23891771 431..1063 100 -> Plus
2R 23891827..23892452 1064..1689 100 -> Plus
2R 23892506..23893177 1690..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:26 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23890537..23890612 1..76 100 -> Plus
2R 23890670..23890732 77..139 100 -> Plus
2R 23890788..23891078 140..430 100 -> Plus
2R 23891139..23891771 431..1063 100 -> Plus
2R 23891827..23892452 1064..1689 100 -> Plus
2R 23892506..23893177 1690..2361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:26 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23890537..23890612 1..76 100 -> Plus
2R 23890670..23890732 77..139 100 -> Plus
2R 23890788..23891078 140..430 100 -> Plus
2R 23891139..23891771 431..1063 100 -> Plus
2R 23891827..23892452 1064..1689 100 -> Plus
2R 23892506..23893177 1690..2361 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:47 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19778060..19778135 1..76 100 -> Plus
arm_2R 19778193..19778255 77..139 100 -> Plus
arm_2R 19778311..19778601 140..430 100 -> Plus
arm_2R 19778662..19779294 431..1063 100 -> Plus
arm_2R 19779350..19779975 1064..1689 100 -> Plus
arm_2R 19780029..19780700 1690..2361 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:03 Download gff for LD20955.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23892005..23892295 140..430 100 -> Plus
2R 23892356..23892988 431..1063 100 -> Plus
2R 23893044..23893669 1064..1689 100 -> Plus
2R 23893723..23894394 1690..2361 100   Plus
2R 23891754..23891829 1..76 100 -> Plus
2R 23891887..23891949 77..139 100 -> Plus

LD20955.pep Sequence

Translation from 59 to 2302

> LD20955.pep
MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK
PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED
VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL
SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT
GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA
KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG
LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY
DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER
AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV
AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK
NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM
VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG
TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY
YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP
RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFY*

LD20955.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12871-PA 749 GF12871-PA 1..749 1..747 3486 86.9 Plus
Dana\GF17047-PA 788 GF17047-PA 249..604 366..733 411 29.7 Plus
Dana\GF21760-PA 924 GF21760-PA 138..636 234..744 256 23.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22898-PA 747 GG22898-PA 1..747 1..747 3893 96.4 Plus
Dere\GG17130-PA 805 GG17130-PA 254..599 366..723 419 31.1 Plus
Dere\GG19495-PA 927 GG19495-PA 59..599 162..709 246 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20192-PA 674 GH20192-PA 11..674 85..747 3027 83.7 Plus
Dgri\GH20153-PA 799 GH20153-PA 239..596 366..732 425 30.5 Plus
Dgri\GH11911-PA 922 GH11911-PA 135..632 233..740 269 24 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
DNAlig1-PA 747 CG5602-PA 1..747 1..747 3870 100 Plus
DNAlig3-PA 806 CG17227-PA 254..609 366..733 400 30.3 Plus
DNAlig4-PA 918 CG12176-PA 128..599 224..709 256 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20719-PA 736 GI20719-PA 1..736 1..747 3157 78.3 Plus
Dmoj\GI24375-PA 793 GI24375-PA 236..591 366..733 441 31.8 Plus
Dmoj\GI15517-PA 926 GI15517-PA 259..637 361..740 239 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11174-PA 744 GL11174-PA 1..744 1..747 3380 84.4 Plus
Dper\GL27179-PA 788 GL27179-PA 236..591 366..733 430 31.5 Plus
Dper\GL22420-PA 916 GL22420-PA 119..597 216..709 257 24 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18999-PA 744 GA18999-PA 1..744 1..747 3386 84.5 Plus
Dpse\GA26759-PA 788 GA26759-PA 236..591 366..733 426 31.5 Plus
Dpse\GA11455-PA 916 GA11455-PA 119..597 216..709 254 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16058-PA 747 GM16058-PA 1..747 1..747 3964 98.3 Plus
Dsec\GM13668-PA 656 GM13668-PA 317..656 408..747 1842 99.4 Plus
Dsec\GM13668-PA 656 GM13668-PA 1..317 1..317 1613 96.5 Plus
Dsec\GM26013-PA 783 GM26013-PA 234..589 366..733 421 31.5 Plus
Dsec\GM17599-PA 671 GM17599-PA 11..515 224..744 256 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11806-PA 713 GD11806-PA 1..713 1..747 3677 92.1 Plus
Dsim\GD20571-PA 362 GD20571-PA 234..360 366..498 163 34.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20456-PA 667 GJ20456-PA 5..667 85..747 3132 86.3 Plus
Dvir\GJ24382-PA 818 GJ24382-PA 258..615 366..732 441 30.8 Plus
Dvir\GJ19276-PA 992 GJ19276-PA 253..631 361..740 259 25.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15713-PA 744 GK15713-PA 1..744 1..747 3208 82.1 Plus
Dwil\GK11194-PA 796 GK11194-PA 232..583 366..726 438 31.3 Plus
Dwil\GK10206-PA 935 GK10206-PA 189..649 272..744 261 24.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14336-PA 747 GE14336-PA 1..747 1..747 3917 96.9 Plus
Dyak\GE24522-PA 785 GE24522-PA 234..585 366..726 417 29.8 Plus
Dyak\GE16147-PA 918 GE16147-PA 59..599 162..709 249 23.7 Plus

LD20955.hyp Sequence

Translation from 59 to 2302

> LD20955.hyp
MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK
PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED
VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL
SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT
GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA
KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG
LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY
DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER
AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV
AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK
NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM
VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG
TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY
YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP
RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFY*

LD20955.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
DNA-ligI-PA 747 CG5602-PA 1..747 1..747 3870 100 Plus
lig3-PA 806 CG17227-PA 254..609 366..733 400 30.3 Plus
Lig4-PA 918 CG12176-PA 128..599 224..709 256 23.4 Plus