BDGP Sequence Production Resources |
Search the DGRC for LD20971
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 209 |
Well: | 71 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4880-RA |
Protein status: | LD20971.pep: gold |
Preliminary Size: | 1716 |
Sequenced Size: | 1707 |
Gene | Date | Evidence |
---|---|---|
CG4880 | 2001-01-01 | Release 2 assignment |
CG4880 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4880 | 2003-01-13 | Blastp of sequenced clone |
CG4880 | 2008-04-29 | Release 5.5 accounting |
CG4880 | 2008-08-15 | Release 5.9 accounting |
CG4880 | 2008-12-18 | 5.12 accounting |
1707 bp assembled on 2007-03-08
GenBank Submission: BT003268
> LD20971.complete CGGCATTTAGAATAATTTGCCGGTTTGTAACATGCAACCAAAGTTTTTAC CAAATTGTATCACAGTAGGCTGATAATTGTATTCGAGCACAAGTCAGCCA AAAATATCCAGTTGCTAACGAAACAAGGCTTAATAAAATGGTCACATACA ATACTCTAATACAGAACGAAAAGAATGAAAATGTGGTCGCCCCGATAAGC CGGCCATTCGCCAGAAAGAGGAGGACTGAGATTCGCCGCCTGCAGTCCAA CAGGCGGTTGAATAAAAAGGTGTGCAAACACCATTTGGACATTGCCCATT GTACCCAGAAGAAGGCTCCATGGCGGAATTGGGCATACCTCATTCTCGCC CTCGCCGCAGGAATTGGCATGTTATTGCAGTTCACCGACAAGTTGTCCAC GGTCAGCGGATTCCTGGAAAGCTACAAAAACCAGTACCACTCGATCGTCC ACAACCAGGACAACTACTGCAATCCCTCCCGACGGCTGGGCGACATGGTC CTGCACGCCCGCCACCAGGTACTCAACCAGGATCTTGCATTGAACCAGCT AGAACTGGCACTGGACAACACCACCAATGAGGCAATCGTCTTGGTGGGCA CCTCTGGCGTAGGCAAGAGCCACACTGCGCGAATCTTGCGCGAAACGTTT CCCTGGCCCGAGAACGTGAATACACTCTCCTGGACCGGCAGTTCTTCTTT GGGCCGAGTGAAGAGCATGCTATCCGGCCTGACATATTGCGGACAGAATA TGATCTTGATTGATAACATGACGCCGAAGGATGCACACTTCGTGCCTATC ATTAACGAAATGATAAGTGAGGGCGAAAAGAGCGCCAACCACACTGAGCA TCCGCAACAGAAGCGGTTGACCATTGTGTTTATCTTTAATGTGAATAGCA TGCAGCCCGGCGAGGAGTTTGAGATGGATATGGAGATCCTTAGAAATATG CCACACACCCAGTTGGTCACCTTTGCGACTCTGGATCCCACCCATCTGGT CGACTGCATCCGCAGGGAAGCCGCCATCGCAATGGTGCACCTGGAAGACG AGCACGTAGAAGAGATAATCAAAAGTATCGATGCTAGCGCTTCTGGCTGC AAGTCGATTTTGGCCAAGGTCCTGCTCTACGGCAAACCAATAATCGCAGA CTCCCAGGATACTGACCAAGTCCTTCCAGTAGGTTCCTTTTAGTAGGTTT TTAAAGTTTACGTTTTAGACAATTCTGCAAACCAGTCGTGATAAATTTAA AAGCAGGTTGGCAAAAACTATTAGGCTAGCATCCGTGGAATATCAGCAAA CAAAGTTTAATGTTGTAAATCAAAAACCAATGTTTTATTCCTGTGTATCG TACATGTACATACATATATGGCCAATACTTTGCTATTTTTGTACTACCAT ATGTGTAAATGAAATTAAGACGACAAATGACAAAATTTTTGTAAAAGAAA ACCAATGGTATCATATAAGAATAAATTTAAATGAACGAATTATATTTAAA TTGTAAGTTGACAGCATTCAACCACGATATTAAGTAAATGTGATTAAAAT TGCCATATGTGTATAAGAGTCTAGAATCAAGTTCTTATAAATATACTATT TTTTTATTTTAAAAATAAGAAAAAAATTATTGTTCTGCTATCTTAAACAA TTATATATTTCGAAGAATGGGAATTACTATACTACTATAAAAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3175..3247 | 1405..1479 | 117 | 65.3 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 764..846 | 1495..1417 | 117 | 63.9 | Minus |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 391..509 | 1374..1498 | 115 | 59.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16776457..16777037 | 1..581 | 99 | -> | Plus |
chrX | 16777250..16778368 | 582..1688 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 138..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 138..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 138..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 138..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1056 | 138..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1688 | 1..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1688 | 1..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 13..1700 | 1..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 1..1688 | 1..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4880-RA | 13..1700 | 1..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886830..16887410 | 1..581 | 100 | -> | Plus |
X | 16887623..16888729 | 582..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886830..16887410 | 1..581 | 100 | -> | Plus |
X | 16887623..16888729 | 582..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16886830..16887410 | 1..581 | 100 | -> | Plus |
X | 16887623..16888729 | 582..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16780863..16781443 | 1..581 | 100 | -> | Plus |
arm_X | 16781656..16782762 | 582..1688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16894928..16895508 | 1..581 | 100 | -> | Plus |
X | 16895721..16896827 | 582..1688 | 100 | Plus |
Translation from 137 to 1192
> LD20971.hyp MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS F*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4880-PA | 351 | CG4880-PA | 1..351 | 1..351 | 1825 | 100 | Plus |
CG4880-PB | 330 | CG4880-PB | 1..330 | 1..351 | 1691 | 94 | Plus |
CG7557-PB | 336 | CG7557-PB | 104..333 | 104..332 | 297 | 32.5 | Plus |
CG7557-PA | 355 | CG7557-PA | 123..352 | 104..332 | 297 | 32.5 | Plus |
Translation from 137 to 1192
> LD20971.pep MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS F*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25262-PA | 350 | GF25262-PA | 100..348 | 91..334 | 298 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19088-PA | 337 | GG19088-PA | 10..337 | 13..343 | 1203 | 70.1 | Plus |
Dere\GG15502-PA | 335 | GG15502-PA | 105..334 | 104..332 | 312 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12792-PA | 368 | GH12792-PA | 91..368 | 67..335 | 467 | 35.3 | Plus |
Dgri\GH16649-PA | 345 | GH16649-PA | 134..341 | 127..332 | 250 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4880-PA | 351 | CG4880-PA | 1..351 | 1..351 | 1825 | 100 | Plus |
CG4880-PB | 330 | CG4880-PB | 1..330 | 1..351 | 1691 | 94 | Plus |
CG7557-PB | 336 | CG7557-PB | 104..333 | 104..332 | 297 | 32.5 | Plus |
CG7557-PA | 355 | CG7557-PA | 123..352 | 104..332 | 297 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15233-PA | 323 | GI15233-PA | 24..308 | 65..338 | 545 | 36.1 | Plus |
Dmoj\GI11610-PA | 351 | GI11610-PA | 139..346 | 127..332 | 295 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22398-PA | 348 | GL22398-PA | 72..341 | 65..334 | 563 | 42.6 | Plus |
Dper\GL21187-PA | 329 | GL21187-PA | 97..323 | 110..341 | 243 | 31 | Plus |
Dper\GL23177-PA | 338 | GL23177-PA | 109..329 | 110..333 | 235 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18498-PA | 348 | GA18498-PA | 72..341 | 65..334 | 588 | 43.4 | Plus |
Dpse\GA22535-PA | 319 | GA22535-PA | 97..316 | 110..332 | 246 | 31.3 | Plus |
Dpse\GA27176-PA | 338 | GA27176-PA | 109..325 | 110..329 | 226 | 29.8 | Plus |
Dpse\GA28203-PA | 292 | GA28203-PA | 98..276 | 123..297 | 149 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13475-PA | 363 | GM13475-PA | 1..347 | 1..347 | 1647 | 88.2 | Plus |
Dsec\GM25271-PA | 330 | GM25271-PA | 98..327 | 104..332 | 291 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17318-PA | 351 | GD17318-PA | 1..349 | 1..347 | 1633 | 87.4 | Plus |
Dsim\GD14305-PA | 329 | GD14305-PA | 111..326 | 117..332 | 276 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18837-PA | 386 | GJ18837-PA | 94..374 | 67..344 | 554 | 38.6 | Plus |
Dvir\GJ11287-PA | 351 | GJ11287-PA | 122..338 | 110..324 | 288 | 32 | Plus |