Clone LD20971 Report

Search the DGRC for LD20971

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:71
Vector:pBS SK-
Associated Gene/TranscriptCG4880-RA
Protein status:LD20971.pep: gold
Preliminary Size:1716
Sequenced Size:1707

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4880 2001-01-01 Release 2 assignment
CG4880 2003-01-01 Sim4 clustering to Release 3
CG4880 2003-01-13 Blastp of sequenced clone
CG4880 2008-04-29 Release 5.5 accounting
CG4880 2008-08-15 Release 5.9 accounting
CG4880 2008-12-18 5.12 accounting

Clone Sequence Records

LD20971.complete Sequence

1707 bp assembled on 2007-03-08

GenBank Submission: BT003268

> LD20971.complete
CGGCATTTAGAATAATTTGCCGGTTTGTAACATGCAACCAAAGTTTTTAC
CAAATTGTATCACAGTAGGCTGATAATTGTATTCGAGCACAAGTCAGCCA
AAAATATCCAGTTGCTAACGAAACAAGGCTTAATAAAATGGTCACATACA
ATACTCTAATACAGAACGAAAAGAATGAAAATGTGGTCGCCCCGATAAGC
CGGCCATTCGCCAGAAAGAGGAGGACTGAGATTCGCCGCCTGCAGTCCAA
CAGGCGGTTGAATAAAAAGGTGTGCAAACACCATTTGGACATTGCCCATT
GTACCCAGAAGAAGGCTCCATGGCGGAATTGGGCATACCTCATTCTCGCC
CTCGCCGCAGGAATTGGCATGTTATTGCAGTTCACCGACAAGTTGTCCAC
GGTCAGCGGATTCCTGGAAAGCTACAAAAACCAGTACCACTCGATCGTCC
ACAACCAGGACAACTACTGCAATCCCTCCCGACGGCTGGGCGACATGGTC
CTGCACGCCCGCCACCAGGTACTCAACCAGGATCTTGCATTGAACCAGCT
AGAACTGGCACTGGACAACACCACCAATGAGGCAATCGTCTTGGTGGGCA
CCTCTGGCGTAGGCAAGAGCCACACTGCGCGAATCTTGCGCGAAACGTTT
CCCTGGCCCGAGAACGTGAATACACTCTCCTGGACCGGCAGTTCTTCTTT
GGGCCGAGTGAAGAGCATGCTATCCGGCCTGACATATTGCGGACAGAATA
TGATCTTGATTGATAACATGACGCCGAAGGATGCACACTTCGTGCCTATC
ATTAACGAAATGATAAGTGAGGGCGAAAAGAGCGCCAACCACACTGAGCA
TCCGCAACAGAAGCGGTTGACCATTGTGTTTATCTTTAATGTGAATAGCA
TGCAGCCCGGCGAGGAGTTTGAGATGGATATGGAGATCCTTAGAAATATG
CCACACACCCAGTTGGTCACCTTTGCGACTCTGGATCCCACCCATCTGGT
CGACTGCATCCGCAGGGAAGCCGCCATCGCAATGGTGCACCTGGAAGACG
AGCACGTAGAAGAGATAATCAAAAGTATCGATGCTAGCGCTTCTGGCTGC
AAGTCGATTTTGGCCAAGGTCCTGCTCTACGGCAAACCAATAATCGCAGA
CTCCCAGGATACTGACCAAGTCCTTCCAGTAGGTTCCTTTTAGTAGGTTT
TTAAAGTTTACGTTTTAGACAATTCTGCAAACCAGTCGTGATAAATTTAA
AAGCAGGTTGGCAAAAACTATTAGGCTAGCATCCGTGGAATATCAGCAAA
CAAAGTTTAATGTTGTAAATCAAAAACCAATGTTTTATTCCTGTGTATCG
TACATGTACATACATATATGGCCAATACTTTGCTATTTTTGTACTACCAT
ATGTGTAAATGAAATTAAGACGACAAATGACAAAATTTTTGTAAAAGAAA
ACCAATGGTATCATATAAGAATAAATTTAAATGAACGAATTATATTTAAA
TTGTAAGTTGACAGCATTCAACCACGATATTAAGTAAATGTGATTAAAAT
TGCCATATGTGTATAAGAGTCTAGAATCAAGTTCTTATAAATATACTATT
TTTTTATTTTAAAAATAAGAAAAAAATTATTGTTCTGCTATCTTAAACAA
TTATATATTTCGAAGAATGGGAATTACTATACTACTATAAAAAAAAAAAA
AAAAAAA

LD20971.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-RA 1723 CG4880-RA 36..1723 1..1688 8440 100 Plus
CG4880.a 1651 CG4880.a 543..1651 580..1688 5545 100 Plus
CG4880.a 1651 CG4880.a 27..545 1..519 2595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16777248..16778368 580..1688 5265 98.6 Plus
chrX 22417052 chrX 16776457..16777038 1..582 2865 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16887621..16888730 580..1689 5550 100 Plus
X 23542271 X 16886830..16887411 1..582 2910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16895719..16896828 580..1689 5550 100 Plus
X 23527363 X 16894928..16895509 1..582 2910 100 Plus
Blast to na_te.dros performed 2019-03-15 18:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3175..3247 1405..1479 117 65.3 Plus
accord2 7650 accord2 QBERT 7650bp 764..846 1495..1417 117 63.9 Minus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 391..509 1374..1498 115 59.5 Plus

LD20971.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:15:07 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16776457..16777037 1..581 99 -> Plus
chrX 16777250..16778368 582..1688 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:11 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 138..1193 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:06:36 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 138..1193 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:49 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 138..1193 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:16:27 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 138..1193 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:06 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1056 138..1193 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:35:27 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:06:36 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:49 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 13..1700 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:16:27 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:06 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 13..1700 1..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:07 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886830..16887410 1..581 100 -> Plus
X 16887623..16888729 582..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:07 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886830..16887410 1..581 100 -> Plus
X 16887623..16888729 582..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:07 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886830..16887410 1..581 100 -> Plus
X 16887623..16888729 582..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:49 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16780863..16781443 1..581 100 -> Plus
arm_X 16781656..16782762 582..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:40:00 Download gff for LD20971.complete
Subject Subject Range Query Range Percent Splice Strand
X 16894928..16895508 1..581 100 -> Plus
X 16895721..16896827 582..1688 100   Plus

LD20971.hyp Sequence

Translation from 137 to 1192

> LD20971.hyp
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF
NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV
HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS
F*

LD20971.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-PA 351 CG4880-PA 1..351 1..351 1825 100 Plus
CG4880-PB 330 CG4880-PB 1..330 1..351 1691 94 Plus
CG7557-PB 336 CG7557-PB 104..333 104..332 297 32.5 Plus
CG7557-PA 355 CG7557-PA 123..352 104..332 297 32.5 Plus

LD20971.pep Sequence

Translation from 137 to 1192

> LD20971.pep
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIF
NVNSMQPGEEFEMDMEILRNMPHTQLVTFATLDPTHLVDCIRREAAIAMV
HLEDEHVEEIIKSIDASASGCKSILAKVLLYGKPIIADSQDTDQVLPVGS
F*

LD20971.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25262-PA 350 GF25262-PA 100..348 91..334 298 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19088-PA 337 GG19088-PA 10..337 13..343 1203 70.1 Plus
Dere\GG15502-PA 335 GG15502-PA 105..334 104..332 312 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12792-PA 368 GH12792-PA 91..368 67..335 467 35.3 Plus
Dgri\GH16649-PA 345 GH16649-PA 134..341 127..332 250 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-PA 351 CG4880-PA 1..351 1..351 1825 100 Plus
CG4880-PB 330 CG4880-PB 1..330 1..351 1691 94 Plus
CG7557-PB 336 CG7557-PB 104..333 104..332 297 32.5 Plus
CG7557-PA 355 CG7557-PA 123..352 104..332 297 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15233-PA 323 GI15233-PA 24..308 65..338 545 36.1 Plus
Dmoj\GI11610-PA 351 GI11610-PA 139..346 127..332 295 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22398-PA 348 GL22398-PA 72..341 65..334 563 42.6 Plus
Dper\GL21187-PA 329 GL21187-PA 97..323 110..341 243 31 Plus
Dper\GL23177-PA 338 GL23177-PA 109..329 110..333 235 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18498-PA 348 GA18498-PA 72..341 65..334 588 43.4 Plus
Dpse\GA22535-PA 319 GA22535-PA 97..316 110..332 246 31.3 Plus
Dpse\GA27176-PA 338 GA27176-PA 109..325 110..329 226 29.8 Plus
Dpse\GA28203-PA 292 GA28203-PA 98..276 123..297 149 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13475-PA 363 GM13475-PA 1..347 1..347 1647 88.2 Plus
Dsec\GM25271-PA 330 GM25271-PA 98..327 104..332 291 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17318-PA 351 GD17318-PA 1..349 1..347 1633 87.4 Plus
Dsim\GD14305-PA 329 GD14305-PA 111..326 117..332 276 31.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18837-PA 386 GJ18837-PA 94..374 67..344 554 38.6 Plus
Dvir\GJ11287-PA 351 GJ11287-PA 122..338 110..324 288 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14642-PA 225 GK14642-PA 1..219 120..332 375 36.8 Plus
Dwil\GK17024-PA 341 GK17024-PA 98..336 91..332 298 32.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17633-PA 340 GE17633-PA 51..335 57..344 1101 71.2 Plus
Dyak\GE21810-PA 339 GE21810-PA 107..333 104..330 328 33.8 Plus