Clone LD20984 Report

Search the DGRC for LD20984

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:84
Vector:pBS SK-
Associated Gene/Transcriptdsh-RA
Protein status:LD20984.pep: gold
Sequenced Size:2841

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18361 2003-01-01 Sim4 clustering to Release 3
dsh 2008-04-29 Release 5.5 accounting
dsh 2008-08-15 Release 5.9 accounting
dsh 2008-12-18 5.12 accounting

Clone Sequence Records

LD20984.complete Sequence

2841 bp (2841 high quality bases) assembled on 2005-07-29

GenBank Submission: BT023781

> LD20984.complete
CTAACACACTGTTTTTTTTTAGTCTCAAAATTCTAACAAATTTATTGATA
AACTAGCAATATGCTCGTTTCGCCCTGCCCCCGCTGCGTGCACCGACATT
AAAGCGCACCAAATCGTGCTAATGGAGCAATATCAACGCCGTGCAAATCG
ACGAATTAACAGCCGCCGCTTCCATTGAATCGAAATACCCAGCCCAAAAA
AAAGAGAAAGAAAAAGTAAAAGAAACGCGTGCGAGAGCGAGAGGGCTAGA
GCGACCAGGGGGAGAAAAGCAAAATCGAGTGAATTTTGTTTGTTGTATCG
GCTTTTCCCTGGCTTAATCCCGTTTTCCCTGTGATTTTTCCCCACCAACT
TCCCACGCCACCTCCCCACCGCATCCATCGCATTTCGTTTTGATCGCGTT
TTATCGCGTCGAGGAGTTTTCCCGTGGATTTCCGCAGTCGGCGCAGCTAA
AATGGACGCGGACAGGGGCGGCGGGCAGGAGACGAAGGTGATATACCACA
TCGACGATGAGACGACGCCGTATCTGGTGAAGATCCCCATTCCATCCGCC
CAGGTGACGCTGCGCGATTTCAAGCTGGTGCTGAACAAGCAGAACAACAA
CTACAAGTACTTCTTCAAGTCAATGGACGCCGATTTCGGTGTGGTCAAAG
AGGAAATAGCCGACGACTCCACCATACTGCCCTGCTTCAATGGGCGAGTG
GTGTCCTGGCTGGTCTCCGCCGATGGTACCAATCAGTCAGATAACTGCTC
CGAGCTGCCAACCAGTGAGTGTGAATTGGGCATGGGTCTGACCAACAGGA
AGCTACAGCAGCAACAGCAGCAGCATCAGCAGCAGCAACAACAACAGCAG
CAGCAGCACCAGCAACAGCAACAACAACAGCAGCAGCAGGTGCAGCCTGT
CCAGCTGGCGCAGCAGCAACAGCAGCAGGTGCTCCATCACCAGAAGATGA
TGGGCAATCCGCTGCTGCAGCCGCCACCGCTCACATATCAATCGGCATCC
GTGCTCTCCAGCGATCTGGACTCGACCAGTCTCTTTGGCACCGAATCCGA
ATTGACGCTGGACCGCGACATGACCGACTATAGCAGCGTTCAGCGATTGC
AGGTGCGCAAGAAGCCGCAGAGGCGCAAAAAACGGGCGCCCAGCATGTCG
CGCACCTCCTCGTACAGCTCCATAACCGACTCGACCATGTCCCTAAATAT
CATTACCGTCTCCATCAACATGGAGGCGGTCAACTTTCTGGGCATATCCA
TTGTCGGGCAATCGAATCGCGGCGGCGACGGCGGCATCTACGTGGGCAGC
ATCATGAAAGGCGGCGCAGTGGCACTCGATGGACGCATCGAACCGGGCGA
CATGATCCTCCAAGTGAACGATGTCAACTTCGAGAACATGACCAACGACG
AGGCGGTACGTGTGCTGAGAGAAGTCGTTCAGAAGCCGGGACCCATCAAG
CTGGTGGTGGCCAAGTGCTGGGACCCAAATCCCAAGGGCTACTTCACCAT
TCCGCGCACGGAGCCGGTGCGACCCATCGATCCCGGTGCTTGGGTGGCGC
ACACTCAGGCCCTCACATCGCACGACAGTATTATTGCCGACATTGCGGAG
CCGATTAAGGAGCGTCTGGACCAGAATAACCTCGAGGAGATCGTTAAGGC
GATGACGAAGCCGGACAGCGGCCTGGAGATCAGGGATCGCATGTGGCTAA
AGATAACGATTCCCAATGCATTTATCGGCGCCGATGCGGTCAATTGGGTG
CTGGAGAATGTGGAGGATGTTCAGGATAGGCGGGAGGCGCGAAGGATCGT
CTCGGCGATGCTGCGCAGCAATTACATCAAGCATACGGTCAATAAGTTGA
CCTTCTCGGAGCAGTGCTACTACGTGGTGAACGAGGAGCGCAATCCCAAT
CTGTTGGGCCGAGGACATCTGCATCCGCACCAGCTGCCGCACGGGCATGG
CGGCCATGCGCTTAGCCATGCGGACACCGAGAGCATCACCAGCGACATCG
GGCCGCTACCGAACCCGCCCATTTATATGCCATATTCGGCCACGTACAAT
CCAAGTCACGGCTATCAGCCGATCCAGTACGGCATCGCCGAGCGACACAT
CTCGTCGGGATCGAGTAGCAGCGATGTGCTGACCAGCAAGGATATCTCGG
CGTCGCAGAGCGACATCACCTCGGTGATCCATCAGGCCAACCAGCTGACC
ATCGCCGCTCATGGCTCTAACAAATCATCCGGCTCCTCCAATCGGGGCGG
CGGCGGAGGCGGTGGCGGTGGCGGCAACAATACCAACGATCAGGACGTAT
CCGTATTTAATTACGTATTGTAGAAACCTTTCTTTTTGCAATCAAATTGT
GTTTTTAATTAATTAAATTAAATATGTACGATTATTCTTTTTTATATACG
AGTATACAAAGCAAGCAAACAGCAAACCACAATATAATAATTATAATTAT
AATAATAATAATAATAATAATTATAATAATAATAATAATACTTATGTATA
TGTATGGTATGTGTAAGTCATAGAAAAGAACGCTAAACACCCAGCCGCAA
CGAGTCAAGGATCAGCGAGGGCTCGTGAGGCAGCAGGAGGATCAGCACAG
GGATATCCGTGTCCGGCAGCAATCGGTTGTGGACCCGATCAGATCAGATC
AACTGAGATATATGATATATGATATATATATATATATATATATATATATA
TATATGGATGATGCGGAGCGGAGCGGAGGAGCAGGAACGGCAGCATGACG
GGCGAGAATGATTTTGAATAAAGTTCTAAGAATTTAGTAATCACAAAGTA
AATAAATACAAATAAAATGAATAAAAAAAAAAAAAAAAAAA

LD20984.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
dsh-RA 2846 dsh-RA 23..2846 1..2824 14120 100 Plus
dsh-RB 2780 dsh-RB 508..2780 552..2824 11365 100 Plus
dsh-RB 2780 dsh-RB 23..513 1..491 2455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11247047..11249869 1..2822 14020 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11355903..11358726 1..2824 14120 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11364001..11366824 1..2824 14120 100 Plus
2L 23513712 2L 4881568..4881692 943..816 210 78.9 Minus
Blast to na_te.dros performed on 2019-03-16 14:52:03 has no hits.

LD20984.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:52:55 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11247047..11247837 1..790 99 == Plus
chrX 11247937..11249480 890..2433 96 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:12 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 1..1872 452..2323 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:13 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 1..1872 452..2323 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:36 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 1..1872 452..2323 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:54 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 1..1872 452..2323 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:06 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 1..1872 452..2323 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:33:50 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 23..2844 1..2822 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:13 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 23..2844 1..2822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:36 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 23..2844 1..2822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:54 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 23..2844 1..2822 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:06 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
dsh-RA 23..2844 1..2822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:55 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
X 11355903..11358724 1..2822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:55 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
X 11355903..11358724 1..2822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:55 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
X 11355903..11358724 1..2822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:36 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11249936..11252757 1..2822 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:31 Download gff for LD20984.complete
Subject Subject Range Query Range Percent Splice Strand
X 11364001..11366822 1..2822 100   Plus

LD20984.pep Sequence

Translation from 451 to 2322

> LD20984.pep
MDADRGGGQETKVIYHIDDETTPYLVKIPIPSAQVTLRDFKLVLNKQNNN
YKYFFKSMDADFGVVKEEIADDSTILPCFNGRVVSWLVSADGTNQSDNCS
ELPTSECELGMGLTNRKLQQQQQQHQQQQQQQQQQHQQQQQQQQQQVQPV
QLAQQQQQQVLHHQKMMGNPLLQPPPLTYQSASVLSSDLDSTSLFGTESE
LTLDRDMTDYSSVQRLQVRKKPQRRKKRAPSMSRTSSYSSITDSTMSLNI
ITVSINMEAVNFLGISIVGQSNRGGDGGIYVGSIMKGGAVALDGRIEPGD
MILQVNDVNFENMTNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTI
PRTEPVRPIDPGAWVAHTQALTSHDSIIADIAEPIKERLDQNNLEEIVKA
MTKPDSGLEIRDRMWLKITIPNAFIGADAVNWVLENVEDVQDRREARRIV
SAMLRSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPHGHG
GHALSHADTESITSDIGPLPNPPIYMPYSATYNPSHGYQPIQYGIAERHI
SSGSSSSDVLTSKDISASQSDITSVIHQANQLTIAAHGSNKSSGSSNRGG
GGGGGGGGNNTNDQDVSVFNYVL*

LD20984.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21769-PA 500 GF21769-PA 47..500 168..623 2065 96.1 Plus
Dana\GF21768-PA 57 GF21768-PA 1..57 1..79 265 69.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18408-PA 599 GG18408-PA 1..599 1..623 3145 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12181-PA 589 GH12181-PA 1..589 1..623 2364 85.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
dsh-PA 623 CG18361-PA 1..623 1..623 3244 100 Plus
CG32767-PG 1280 CG32767-PG 402..489 105..193 167 43.8 Plus
CG32767-PH 1281 CG32767-PH 402..489 105..193 167 43.8 Plus
CG32767-PF 1281 CG32767-PF 402..489 105..193 167 43.8 Plus
CG32767-PE 1281 CG32767-PE 402..489 105..193 167 43.8 Plus
CG32767-PD 1281 CG32767-PD 402..489 105..193 167 43.8 Plus
CG32767-PC 1281 CG32767-PC 402..489 105..193 167 43.8 Plus
Ptip-PA 2294 CG32133-PA 207..323 116..223 167 40.8 Plus
dlg1-PK 911 CG1725-PK 28..231 116..324 166 26.8 Plus
Unr-PC 1032 CG7015-PC 51..171 109..199 166 41.3 Plus
Unr-PA 1039 CG7015-PA 51..171 109..199 166 41.3 Plus
Unr-PE 1057 CG7015-PE 51..171 109..199 166 41.3 Plus
Unr-PD 1057 CG7015-PD 51..171 109..199 166 41.3 Plus
Unr-PB 1057 CG7015-PB 51..171 109..199 166 41.3 Plus
CG15772-PB 259 CG15772-PB 47..143 115..215 164 44.7 Plus
CG15772-PA 259 CG15772-PA 47..143 115..215 164 44.7 Plus
CG15365-PC 821 CG15365-PC 501..622 59..173 164 37.9 Plus
CG15365-PA 821 CG15365-PA 501..622 59..173 164 37.9 Plus
CG15365-PB 828 CG15365-PB 508..629 59..173 164 37.9 Plus
Sp1-PB 520 CG1343-PB 426..479 119..168 163 66.7 Plus
Sp1-PD 715 CG1343-PD 621..674 119..168 163 66.7 Plus
Sp1-PE 720 CG1343-PE 626..679 119..168 163 66.7 Plus
Sp1-PF 726 CG1343-PF 621..674 119..168 163 66.7 Plus
hdc-PC 1080 CG15532-PC 724..861 119..256 163 33.3 Plus
wts-PA 1105 CG12072-PA 450..564 92..193 163 41.5 Plus
NFAT-PD 1210 CG11172-PD 742..943 119..331 163 29.1 Plus
NFAT-PH 1248 CG11172-PH 780..981 119..331 163 29.1 Plus
NFAT-PC 1248 CG11172-PC 780..981 119..331 163 29.1 Plus
NFAT-PA 1419 CG11172-PA 951..1152 119..331 163 29.1 Plus
NFAT-PB 1457 CG11172-PB 989..1190 119..331 163 29.1 Plus
Clk-PH 895 CG7391-PH 665..712 114..161 162 70.8 Plus
Clk-PG 895 CG7391-PG 665..712 114..161 162 70.8 Plus
Clk-PF 961 CG7391-PF 731..778 114..161 162 70.8 Plus
Clk-PA 1023 CG7391-PA 793..840 114..161 162 70.8 Plus
Clk-PD 1027 CG7391-PD 797..844 114..161 162 70.8 Plus
ec-PA 1712 CG2904-PA 1438..1490 116..168 162 66 Plus
ec-PB 1746 CG2904-PB 1472..1524 116..168 162 66 Plus
ec-PC 1765 CG2904-PC 1491..1543 116..168 162 66 Plus
Clk-PH 895 CG7391-PH 651..723 118..195 161 50 Plus
Clk-PG 895 CG7391-PG 651..723 118..195 161 50 Plus
Clk-PF 961 CG7391-PF 717..789 118..195 161 50 Plus
Clk-PA 1023 CG7391-PA 779..851 118..195 161 50 Plus
Clk-PD 1027 CG7391-PD 783..855 118..195 161 50 Plus
Sp1-PB 520 CG1343-PB 392..470 89..165 159 51.9 Plus
CG15365-PC 821 CG15365-PC 228..292 120..184 159 56.9 Plus
CG15365-PA 821 CG15365-PA 228..292 120..184 159 56.9 Plus
CG15365-PB 828 CG15365-PB 228..292 120..184 159 56.9 Plus
Sp1-PD 715 CG1343-PD 587..665 89..165 159 51.9 Plus
Sp1-PE 720 CG1343-PE 592..670 89..165 159 51.9 Plus
Sp1-PF 726 CG1343-PF 587..665 89..165 159 51.9 Plus
Cfp1-PB 643 CG17446-PB 564..622 118..173 159 62.7 Plus
Cfp1-PA 663 CG17446-PA 584..642 118..173 159 62.7 Plus
Efa6-PC 1387 CG31158-PC 753..865 116..249 159 36.6 Plus
Efa6-PG 1402 CG31158-PG 753..865 116..249 159 36.6 Plus
CG16711-PC 1497 CG16711-PC 1383..1421 119..158 159 85 Plus
CG15772-PB 259 CG15772-PB 33..85 112..164 154 62.3 Plus
CG15772-PA 259 CG15772-PA 33..85 112..164 154 62.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15711-PA 582 GI15711-PA 1..582 1..623 2356 86.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14851-PA 599 GL14851-PA 1..599 1..623 2359 86.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14904-PA 562 GA14904-PA 1..559 1..587 2314 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11474-PA 601 GM11474-PA 1..601 1..623 3184 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15240-PA 581 GJ15240-PA 1..581 1..623 2352 85.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25610-PA 604 GK25610-PA 1..604 1..623 2248 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15927-PA 597 GE15927-PA 1..597 1..623 3129 95.5 Plus

LD20984.hyp Sequence

Translation from 451 to 2322

> LD20984.hyp
MDADRGGGQETKVIYHIDDETTPYLVKIPIPSAQVTLRDFKLVLNKQNNN
YKYFFKSMDADFGVVKEEIADDSTILPCFNGRVVSWLVSADGTNQSDNCS
ELPTSECELGMGLTNRKLQQQQQQHQQQQQQQQQQHQQQQQQQQQQVQPV
QLAQQQQQQVLHHQKMMGNPLLQPPPLTYQSASVLSSDLDSTSLFGTESE
LTLDRDMTDYSSVQRLQVRKKPQRRKKRAPSMSRTSSYSSITDSTMSLNI
ITVSINMEAVNFLGISIVGQSNRGGDGGIYVGSIMKGGAVALDGRIEPGD
MILQVNDVNFENMTNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTI
PRTEPVRPIDPGAWVAHTQALTSHDSIIADIAEPIKERLDQNNLEEIVKA
MTKPDSGLEIRDRMWLKITIPNAFIGADAVNWVLENVEDVQDRREARRIV
SAMLRSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPHGHG
GHALSHADTESITSDIGPLPNPPIYMPYSATYNPSHGYQPIQYGIAERHI
SSGSSSSDVLTSKDISASQSDITSVIHQANQLTIAAHGSNKSSGSSNRGG
GGGGGGGGNNTNDQDVSVFNYVL*

LD20984.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
dsh-PA 623 CG18361-PA 1..623 1..623 3244 100 Plus
CG32767-PG 1280 CG32767-PG 402..489 105..193 167 43.8 Plus
CG32767-PH 1281 CG32767-PH 402..489 105..193 167 43.8 Plus
CG15772-PB 259 CG15772-PB 47..143 115..215 164 44.7 Plus
CG15772-PA 259 CG15772-PA 47..143 115..215 164 44.7 Plus
CG15772-PB 259 CG15772-PB 33..85 112..164 154 62.3 Plus
CG15772-PA 259 CG15772-PA 33..85 112..164 154 62.3 Plus