BDGP Sequence Production Resources |
Search the DGRC for LD20987
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 209 |
Well: | 87 |
Vector: | pBS SK- |
Associated Gene/Transcript | Traf4-RA |
Protein status: | LD20987.pep: gold |
Preliminary Size: | 2314 |
Sequenced Size: | 2360 |
Gene | Date | Evidence |
---|---|---|
CG3048 | 2001-01-01 | Release 2 assignment |
CG3048 | 2002-03-19 | Blastp of sequenced clone |
CG3048 | 2003-01-01 | Sim4 clustering to Release 3 |
Traf1 | 2008-04-29 | Release 5.5 accounting |
Traf4 | 2008-08-15 | Release 5.9 accounting |
Traf4 | 2008-12-18 | 5.12 accounting |
2360 bp (2360 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094792
> LD20987.complete GCAAGCGGTTCGTATTCGTGAAGTTCGCATCTGTATCTGAAACTGAGCCT GAACGGAAAACACAAGACAAACGATGCGCGTGCGCCGTGTGAATTTCGCC AAGTTTTGAAATAGCCAAGATCTTTTCTGAGTGATGTGCCAATAAACTAA GTGCAATTGCCCAAGCAAAGCAATCAAAGACCCCCAAAAAACTTGCCAAT TGAAACACTTTTGGATTAGTTTCACGACAAGAAAATAAACAAAAAACAAA AACATTAACAATATGGTTCGAAGTTTGGCCCAGTGGACGAAGACGCTGAG CTTCCCCTCGCGTCTCTCGCCCAATCGCAACTCCAAGGACTGCTCCACTC TGGCCAGTCCCGTACCGCCACCAACTCCCCCCCGGAACAAGACGACCTCC GGCAGTGGAAACTGCGCCACATCGCGCTCCTCCTCGTCGACGGTGTCCTC ATCGCACTCGTCCTCACACAGTTCACCCACTCCTGGGAACAACAACAACA ACATGCCCATCACGGAACTGGAACAGATTATCTATCCCGGTCCCGATCCA AAACACATTATGGGCTCCTTGGTCTTTTGCATTCATCACAAACAGGGCTG CAAGTGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAACGCCTGTA AGCACGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGATTCCCCGC ATCATGATGACCGATCATCTCCAGTACACCTGCACGATGAGGCGTACCCG CTGCGAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAGGAGCACA ACGGAAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTGCGGCCAG CGGATACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACTGTGCCAA GCGACTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCTGACACAC TGCCCTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTGCCCGCAG AGATGCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGCATTTGCG TGATGAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAGGCGGGAT GCCGCTTCAAGGGTCCACGCCAGATGCTGGAGGCCCATCTGGAGAGCAAC GCCGCCGCTCATCTCTCGCTGATGGTGGCCCTCAGCTCGCGCCAGGGTCA GCAGATCCAGATGCTCAAGTCGGCGGTGTCCAAGCTGTCCATCAACTACA CAGGCACTCTGTTGTGGAAGATCACCGACTGGTCGGCTAAGATGGCCGAA GCGAGGGGCAAGGATGGCCTGGAGCTAGTCTCACCCCCGTTCTACACCTC CCAGTATGGATACAAGCTGCAGGCGTCGATGTTCCTCAATGGCAATGGAC CTGGGGAAAACACGCACGTCTCCGTCTACATAAAGGTCCTGCCGGGAGAG TACGATGCTCTGCTCAAGTGGCCATTCTCGCACTCCATCACCTTCACACT GTTCGAACAGGGCGCCCAAAGTGGCCAGGGAGGCGTGGCGGAATCCTTCG TCCCCGATCCCACCTGGGAGAACTTCCAGAGGCCGTCCAACGAACCAGAT CAGCTAGGATTCGGCTTCCCACGCTTCATCTCCCACGAACTGCTGCACAG CCGACCCTTCATCAAGGGCGATACCGTGTTTCTGCGCGTGAAAGTGGATC CCAGCAAGATAGTGGCCGTCTAAGGAGGACCATTAGTACCGTAGACATTT ACTCGACTTGTGTAAATACTGTGTATTTAAATTTATGAGTAAATCCCCTC TAGCCTAGCGTAGTCTAGCCTGTTCAGTCTCAGCGGCAGCTTCGGGCGAT GTTGGCCGGCAGGCGCTAACTGGCCTTGGAATGCCGTCCGCTGGGCCACT GCGTCATAGTCATATTCGATTTGTTTAGGTTTTTGCAGTGCTGGAATTAA ACCAAAGCATAATTACGCATAGAAATACATTGAGAGCTCATACAATTCAT CCATTAAAGTACGCCTAAGTTTGTGTCTTAAGTCTTTTGTTTAGAGATTT GTATTATTGCGCGCGATGCGATCACTTTCAAAAGATCTTCAAACTAGACC ATACGCTCAAAATCACTTAGACCATAAGTTGCATGTAAATAGTGTTAAAT TCGGAGCAGCCGCAGCGACCGCAAACCTAGTTTAAGTTGTAGCACGTAGT TAGTTGCCTAAGCGAACGCATAAGTCATTAGTACCATGAACGCGAACATA AACATGAGAATCCAACTTTCAACATAGTCAAATAAGTTTATGTTTAAAAG CTAAGAAGTCAAACATACAATAAATGAAGTAACAAAATACAAAAAAAAAA AAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4371151..4371679 | 1..529 | 99 | -> | Plus |
chr2L | 4378046..4379856 | 530..2340 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 1..1461 | 263..1723 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 1..1461 | 263..1723 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 1..1461 | 263..1723 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 1..1461 | 263..1723 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 1..1461 | 263..1723 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 22..2361 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 22..2361 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 22..2361 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 22..2361 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf4-RA | 22..2361 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4372011..4372539 | 1..529 | 100 | -> | Plus |
2L | 4378906..4380716 | 530..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4372011..4372539 | 1..529 | 100 | -> | Plus |
2L | 4378906..4380716 | 530..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4372011..4372539 | 1..529 | 100 | -> | Plus |
2L | 4378906..4380716 | 530..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4372011..4372539 | 1..529 | 100 | -> | Plus |
arm_2L | 4378906..4380716 | 530..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4372011..4372539 | 1..529 | 100 | -> | Plus |
2L | 4378906..4380716 | 530..2340 | 100 | Plus |
Translation from 262 to 1722
> LD20987.pep MVRSLAQWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGN CATSRSSSSTVSSSHSSSHSSPTPGNNNNNMPITELEQIIYPGPDPKHIM GSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMT DHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILR GRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDA GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH LSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARGK DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDAL LKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGF GFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21137-PA | 488 | GF21137-PA | 1..488 | 1..486 | 2566 | 97.7 | Plus |
Dana\GF19567-PA | 465 | GF19567-PA | 301..463 | 304..478 | 187 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24997-PA | 486 | GG24997-PA | 1..486 | 1..486 | 2615 | 99.6 | Plus |
Dere\GG17964-PA | 474 | GG17964-PA | 331..472 | 328..478 | 193 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13208-PA | 490 | GH13208-PA | 1..490 | 1..486 | 2270 | 92.9 | Plus |
Dgri\GH12698-PA | 462 | GH12698-PA | 320..460 | 328..478 | 199 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf4-PA | 486 | CG3048-PA | 1..486 | 1..486 | 2627 | 100 | Plus |
Traf4-PE | 477 | CG3048-PE | 2..477 | 33..486 | 2174 | 86.6 | Plus |
Traf-like-PE | 395 | CG4394-PE | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PD | 395 | CG4394-PD | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PG | 395 | CG4394-PG | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PF | 395 | CG4394-PF | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PB | 395 | CG4394-PB | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PC | 452 | CG4394-PC | 309..450 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PA | 474 | CG4394-PA | 331..472 | 328..478 | 164 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22040-PA | 489 | GI22040-PA | 1..489 | 1..486 | 2346 | 95.1 | Plus |
Dmoj\GI14463-PA | 467 | GI14463-PA | 324..465 | 328..478 | 195 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15107-PA | 453 | GL15107-PA | 1..453 | 1..486 | 1977 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15869-PA | 493 | GA15869-PA | 1..493 | 1..486 | 2519 | 95.4 | Plus |
Dpse\GA18154-PA | 480 | GA18154-PA | 337..478 | 328..478 | 179 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18466-PA | 520 | GM18466-PA | 1..520 | 1..486 | 2579 | 93.3 | Plus |
Dsec\GM13439-PA | 460 | GM13439-PA | 317..458 | 328..478 | 190 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23279-PA | 483 | GD23279-PA | 81..483 | 90..486 | 2111 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16121-PA | 493 | GJ16121-PA | 1..493 | 1..486 | 2293 | 93.9 | Plus |
Dvir\GJ18797-PA | 467 | GJ18797-PA | 324..465 | 328..478 | 196 | 30.5 | Plus |
Translation from 262 to 1722
> LD20987.hyp MVRSLAQWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGN CATSRSSSSTVSSSHSSSHSSPTPGNNNNNMPITELEQIIYPGPDPKHIM GSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMT DHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILR GRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDA GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH LSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARGK DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDAL LKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGF GFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf4-PA | 486 | CG3048-PA | 1..486 | 1..486 | 2627 | 100 | Plus |
Traf4-PE | 477 | CG3048-PE | 2..477 | 33..486 | 2174 | 86.6 | Plus |
Traf-like-PE | 395 | CG4394-PE | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PD | 395 | CG4394-PD | 252..393 | 328..478 | 164 | 29.8 | Plus |
Traf-like-PG | 395 | CG4394-PG | 252..393 | 328..478 | 164 | 29.8 | Plus |