Clone LD20987 Report

Search the DGRC for LD20987

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:87
Vector:pBS SK-
Associated Gene/TranscriptTraf4-RA
Protein status:LD20987.pep: gold
Preliminary Size:2314
Sequenced Size:2360

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3048 2001-01-01 Release 2 assignment
CG3048 2002-03-19 Blastp of sequenced clone
CG3048 2003-01-01 Sim4 clustering to Release 3
Traf1 2008-04-29 Release 5.5 accounting
Traf4 2008-08-15 Release 5.9 accounting
Traf4 2008-12-18 5.12 accounting

Clone Sequence Records

LD20987.complete Sequence

2360 bp (2360 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094792

> LD20987.complete
GCAAGCGGTTCGTATTCGTGAAGTTCGCATCTGTATCTGAAACTGAGCCT
GAACGGAAAACACAAGACAAACGATGCGCGTGCGCCGTGTGAATTTCGCC
AAGTTTTGAAATAGCCAAGATCTTTTCTGAGTGATGTGCCAATAAACTAA
GTGCAATTGCCCAAGCAAAGCAATCAAAGACCCCCAAAAAACTTGCCAAT
TGAAACACTTTTGGATTAGTTTCACGACAAGAAAATAAACAAAAAACAAA
AACATTAACAATATGGTTCGAAGTTTGGCCCAGTGGACGAAGACGCTGAG
CTTCCCCTCGCGTCTCTCGCCCAATCGCAACTCCAAGGACTGCTCCACTC
TGGCCAGTCCCGTACCGCCACCAACTCCCCCCCGGAACAAGACGACCTCC
GGCAGTGGAAACTGCGCCACATCGCGCTCCTCCTCGTCGACGGTGTCCTC
ATCGCACTCGTCCTCACACAGTTCACCCACTCCTGGGAACAACAACAACA
ACATGCCCATCACGGAACTGGAACAGATTATCTATCCCGGTCCCGATCCA
AAACACATTATGGGCTCCTTGGTCTTTTGCATTCATCACAAACAGGGCTG
CAAGTGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAACGCCTGTA
AGCACGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGATTCCCCGC
ATCATGATGACCGATCATCTCCAGTACACCTGCACGATGAGGCGTACCCG
CTGCGAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAGGAGCACA
ACGGAAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTGCGGCCAG
CGGATACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACTGTGCCAA
GCGACTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCTGACACAC
TGCCCTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTGCCCGCAG
AGATGCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGCATTTGCG
TGATGAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAGGCGGGAT
GCCGCTTCAAGGGTCCACGCCAGATGCTGGAGGCCCATCTGGAGAGCAAC
GCCGCCGCTCATCTCTCGCTGATGGTGGCCCTCAGCTCGCGCCAGGGTCA
GCAGATCCAGATGCTCAAGTCGGCGGTGTCCAAGCTGTCCATCAACTACA
CAGGCACTCTGTTGTGGAAGATCACCGACTGGTCGGCTAAGATGGCCGAA
GCGAGGGGCAAGGATGGCCTGGAGCTAGTCTCACCCCCGTTCTACACCTC
CCAGTATGGATACAAGCTGCAGGCGTCGATGTTCCTCAATGGCAATGGAC
CTGGGGAAAACACGCACGTCTCCGTCTACATAAAGGTCCTGCCGGGAGAG
TACGATGCTCTGCTCAAGTGGCCATTCTCGCACTCCATCACCTTCACACT
GTTCGAACAGGGCGCCCAAAGTGGCCAGGGAGGCGTGGCGGAATCCTTCG
TCCCCGATCCCACCTGGGAGAACTTCCAGAGGCCGTCCAACGAACCAGAT
CAGCTAGGATTCGGCTTCCCACGCTTCATCTCCCACGAACTGCTGCACAG
CCGACCCTTCATCAAGGGCGATACCGTGTTTCTGCGCGTGAAAGTGGATC
CCAGCAAGATAGTGGCCGTCTAAGGAGGACCATTAGTACCGTAGACATTT
ACTCGACTTGTGTAAATACTGTGTATTTAAATTTATGAGTAAATCCCCTC
TAGCCTAGCGTAGTCTAGCCTGTTCAGTCTCAGCGGCAGCTTCGGGCGAT
GTTGGCCGGCAGGCGCTAACTGGCCTTGGAATGCCGTCCGCTGGGCCACT
GCGTCATAGTCATATTCGATTTGTTTAGGTTTTTGCAGTGCTGGAATTAA
ACCAAAGCATAATTACGCATAGAAATACATTGAGAGCTCATACAATTCAT
CCATTAAAGTACGCCTAAGTTTGTGTCTTAAGTCTTTTGTTTAGAGATTT
GTATTATTGCGCGCGATGCGATCACTTTCAAAAGATCTTCAAACTAGACC
ATACGCTCAAAATCACTTAGACCATAAGTTGCATGTAAATAGTGTTAAAT
TCGGAGCAGCCGCAGCGACCGCAAACCTAGTTTAAGTTGTAGCACGTAGT
TAGTTGCCTAAGCGAACGCATAAGTCATTAGTACCATGAACGCGAACATA
AACATGAGAATCCAACTTTCAACATAGTCAAATAAGTTTATGTTTAAAAG
CTAAGAAGTCAAACATACAATAAATGAAGTAACAAAATACAAAAAAAAAA
AAAAAAAAAA

LD20987.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Traf4-RA 2429 Traf4-RA 62..2404 1..2343 11715 100 Plus
Traf4-RC 2538 Traf4-RC 471..2532 282..2343 10310 100 Plus
Traf4.b 1889 Traf4.b 70..1883 530..2343 9070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4378046..4379856 530..2340 8950 99.6 Plus
chr2L 23010047 chr2L 4371151..4371679 1..529 2630 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4378906..4380719 530..2343 9070 100 Plus
2L 23513712 2L 4372011..4372539 1..529 2645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4378906..4380719 530..2343 9070 100 Plus
2L 23513712 2L 4372011..4372539 1..529 2645 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:29:21 has no hits.

LD20987.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:29 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4371151..4371679 1..529 99 -> Plus
chr2L 4378046..4379856 530..2340 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:13 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 1..1461 263..1723 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:27:57 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 1..1461 263..1723 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:13:56 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 1..1461 263..1723 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:36 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 1..1461 263..1723 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:16 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 1..1461 263..1723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:54:30 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 22..2361 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:27:57 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 22..2361 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:13:56 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 22..2361 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:36 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 22..2361 1..2340 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:16 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
Traf4-RA 22..2361 1..2340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:29 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4372011..4372539 1..529 100 -> Plus
2L 4378906..4380716 530..2340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:29 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4372011..4372539 1..529 100 -> Plus
2L 4378906..4380716 530..2340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:29 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4372011..4372539 1..529 100 -> Plus
2L 4378906..4380716 530..2340 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:13:56 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4372011..4372539 1..529 100 -> Plus
arm_2L 4378906..4380716 530..2340 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:35:57 Download gff for LD20987.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4372011..4372539 1..529 100 -> Plus
2L 4378906..4380716 530..2340 100   Plus

LD20987.pep Sequence

Translation from 262 to 1722

> LD20987.pep
MVRSLAQWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGN
CATSRSSSSTVSSSHSSSHSSPTPGNNNNNMPITELEQIIYPGPDPKHIM
GSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMT
DHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILR
GRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDA
GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH
LSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARGK
DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDAL
LKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGF
GFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*

LD20987.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21137-PA 488 GF21137-PA 1..488 1..486 2566 97.7 Plus
Dana\GF19567-PA 465 GF19567-PA 301..463 304..478 187 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24997-PA 486 GG24997-PA 1..486 1..486 2615 99.6 Plus
Dere\GG17964-PA 474 GG17964-PA 331..472 328..478 193 30.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13208-PA 490 GH13208-PA 1..490 1..486 2270 92.9 Plus
Dgri\GH12698-PA 462 GH12698-PA 320..460 328..478 199 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Traf4-PA 486 CG3048-PA 1..486 1..486 2627 100 Plus
Traf4-PE 477 CG3048-PE 2..477 33..486 2174 86.6 Plus
Traf-like-PE 395 CG4394-PE 252..393 328..478 164 29.8 Plus
Traf-like-PD 395 CG4394-PD 252..393 328..478 164 29.8 Plus
Traf-like-PG 395 CG4394-PG 252..393 328..478 164 29.8 Plus
Traf-like-PF 395 CG4394-PF 252..393 328..478 164 29.8 Plus
Traf-like-PB 395 CG4394-PB 252..393 328..478 164 29.8 Plus
Traf-like-PC 452 CG4394-PC 309..450 328..478 164 29.8 Plus
Traf-like-PA 474 CG4394-PA 331..472 328..478 164 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22040-PA 489 GI22040-PA 1..489 1..486 2346 95.1 Plus
Dmoj\GI14463-PA 467 GI14463-PA 324..465 328..478 195 31.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15107-PA 453 GL15107-PA 1..453 1..486 1977 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15869-PA 493 GA15869-PA 1..493 1..486 2519 95.4 Plus
Dpse\GA18154-PA 480 GA18154-PA 337..478 328..478 179 30.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18466-PA 520 GM18466-PA 1..520 1..486 2579 93.3 Plus
Dsec\GM13439-PA 460 GM13439-PA 317..458 328..478 190 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23279-PA 483 GD23279-PA 81..483 90..486 2111 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16121-PA 493 GJ16121-PA 1..493 1..486 2293 93.9 Plus
Dvir\GJ18797-PA 467 GJ18797-PA 324..465 328..478 196 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24337-PA 489 GK24337-PA 1..489 1..486 2319 93 Plus
Dwil\GK25213-PA 476 GK25213-PA 333..474 328..478 190 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Traf1-PA 506 GE18283-PA 1..506 1..486 2596 95.8 Plus
Dyak\Traf3-PA 468 GE17272-PA 325..466 328..478 191 30.7 Plus

LD20987.hyp Sequence

Translation from 262 to 1722

> LD20987.hyp
MVRSLAQWTKTLSFPSRLSPNRNSKDCSTLASPVPPPTPPRNKTTSGSGN
CATSRSSSSTVSSSHSSSHSSPTPGNNNNNMPITELEQIIYPGPDPKHIM
GSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMMT
DHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRILR
GRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCDA
GPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH
LSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARGK
DGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDAL
LKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLGF
GFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*

LD20987.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Traf4-PA 486 CG3048-PA 1..486 1..486 2627 100 Plus
Traf4-PE 477 CG3048-PE 2..477 33..486 2174 86.6 Plus
Traf-like-PE 395 CG4394-PE 252..393 328..478 164 29.8 Plus
Traf-like-PD 395 CG4394-PD 252..393 328..478 164 29.8 Plus
Traf-like-PG 395 CG4394-PG 252..393 328..478 164 29.8 Plus