Clone LD21042 Report

Search the DGRC for LD21042

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:210
Well:42
Vector:pBS SK-
Associated Gene/Transcriptmr-RA
Protein status:LD21042.pep: gold
Sequenced Size:2598

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3060 2007-09-25 DGC5 pick
mr 2008-04-29 Release 5.5 accounting
mr 2008-04-29 Picked prior to 5.5
mr 2008-08-15 Release 5.9 accounting
mr 2008-12-18 5.12 accounting

Clone Sequence Records

LD21042.complete Sequence

2598 bp assembled on 2007-12-04

GenBank Submission: BT031326

> LD21042.complete
TTTCAAGCAATGTTTTGCACTGTTTAAAATAATTACACACAAGCGATGTG
CGACTTTGACGCTTTGTGGGCGGATGTACTGAGAATCTTTCCGGTTTTGG
GTGGAGCGAACGCTGTATCCAATGATCCGGTTGAGGAGAATGTATTCCAA
AATGTTCGCCAGCACCTGATGGTGTTGGGCAGCATAGACACCTTCGCGGC
GGTTGTGGACCTGGAAATCCAGTCGACTATTCGGAATGTCCTGGTGCCCA
AGTTCTGGAAGCACATCCACGACGGCTTGGTCTCGTCTAAATTGCAGGGC
TGGATTAACGACCAAGCTCTGGCCATAGAAGCACTGCCCGATAAGAACGG
ACTGTTCACCCAGTTCATCGACGCCATCAATGAGCTGCATGACAGCTTTC
AGAGCCTGATGCAGGTGAAGCCCAGGCTGATCCAGCTAGTTGGAGCTGAG
ACAAAGCCCACCGCAAAGACGGTGAAGCTCATGCAGGAGGAAGGCATTAA
GAACTGCTTAAGGGACTGCTTGCTGGCTCAACTGCCACCCAATTTCAGTG
TGGTCGTTGGGGCCTTCTACTGGGTGCACTTTAAGCTCTTCACCAAGGCC
TCAAATCTCGCATTGACCACAGTTGACTCTGATGTTTTCGATGAGCTCCT
CTGCGTTGGCTGCAACTTCGAAGCAGAGCAATGCTGCTGCCAAAGGCTGA
CGGATATGGTTAACAAGACAAACATGAAGCTCTTCGAGATGAACCTCATT
GACCGTCTAACTGGGAGTGCTTTAACCGCTCTCATCAAGCTTAAAATCAA
GGAGCACATCAGCGATACATGCATGGGAATCTTCGACAGAAGTCATCTTA
AGCAACTGGAAACTTGGCTATCGGATGTCATCATGTCCTGGCTCACAAAC
ATATTCACGGAATGGAAGTCTAAGGATAGCATAAGCGATATCGAAGTTCC
CGAGTCTGTAAAATCCTTCAAAGTCAAACTGACTTACTTTATGTACGAAA
CGTTTGCCCAAAGCGTTATTGGTCAGTTCTTCAGCATTATAATTGACTAT
CCCGATTCCATTCCGGCTATAGATGACTTAAAGATTTGCATGGAGAAAAT
AGATATGCGAGTCTACCTCACTGAATCCCTTAGGAACTCGCTAGAGGCAA
GGATTCTGCATCCTGGAGTCAACACCATGGACATATTAACGGGTTACGTG
GCAGCCATCAAAGCTATTCGCCATCTGGATAGTACCGGAGTCATCTTAGA
GATGGTAACTGCTCCAATCAAAGATTACCTGCGGAAACGAAACGACACAG
TGCGACGCGTAGTCACTGGGTTGACTGAAGAGGGGCCCACGGACTTATCC
GAGGAACTCGCCAAGGGAGAAACAATTAAGGAATGCAAGGACTCGGGTAC
CGATGAGTTCAGCAACTGGGAAAATTGGCAACCCGATCCGTTTGGTATAG
ATGCCAGCATTATGCAGTACAACAGCTCGCGGAAGATGAGATCGGCCGAC
ATTATATCGATGGTTGTAGACATATACGGCAGTAAGGAGTTGTTTATGAC
AGAGTATCGCAATCTAATGGCGGACAGACTGCTGGCCCAGTTAGATTTTA
ATTCCGAAAAAGAAATTCGAAATCTGGAACTGCTGAAAATCCGCTTTGGC
GAATCGCTGCTGCACAGCTGCGAGGTGATGTTGAAAGACGTAACCGACTC
CAAGCGAATTAACGCGCACATCCACAGCGATGGCGACCGAACTGAAAATC
AGTTGTTCGACATCTCCTCGCTGATTGTTTCTGCTCAGTTTTGGCCGTCC
TTCAATAAAGAAAGCCTCCAACTTCCTGAGGAGATTGAGAATGAGTTCAA
GAAGTACACCAAGGCCTACGAGGCATACAAGGGCAACCGTACGCTCAACT
GGCGTACAGTGACTGGCCGTGTAAATATTGAAATCGAGATCGGTGACCGG
ACCATGGAAATGGTTGTGAGCCCCATTTTGGCGGTTATTATATACCACTT
TCAAACTAAGAATGAATGGACTATCGAGGATCTTAGTTCCATTACGAAAG
TTCCAGCGTCTGCACTGCGGCGTCGTCTGAGTTTTTGGCAAAACCACGGA
TTGATCTCGGAAACGACACCCGGAATATTCACGCTGCTGGAAAAGGAATC
GGAGAAGTCTCAGTACGAGGACATGAGTCTGGCAGAAGCTGACGAAGAGG
ATTTGGAATCCGCAATGGCTTCTGCCAGCGATCAAAGGGAAGAAGAACTC
CAAGTTTTTTGGTCCTATATTGTTGGAATGCTCACGAATCTTGACTCCAT
GCCAATTGACCGAATCCACCAGATGCTGAAGCTGTTCGCCTCCCACAGCG
GCGGAGTGGAGTTTACTCAGGATGAGCTGAAACACTTTCTCCAGCGAAAA
GTCAGGGAGCACAAGCTAATATTCTCGGGTGGAGTTTACCAATTGGCCAA
ATAAGTTTCGGAGATCCAAAACCAAGTTGCAAACGACTGAAGGAATCATG
AAATAAATAATGAATTAACGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
mr-RA 2752 mr-RA 42..2564 1..2523 12600 99.9 Plus
mr.a 2711 mr.a 1076..2527 1072..2523 7260 100 Plus
mr.a 2711 mr.a 32..1077 1..1046 5215 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19859840..19860549 1045..1754 3460 99.2 Plus
chr2R 21145070 chr2R 19858713..19859230 108..625 2575 99.8 Plus
chr2R 21145070 chr2R 19861220..19861488 2254..2522 1315 99.3 Plus
chr2R 21145070 chr2R 19860594..19860857 1748..2011 1290 99.2 Plus
chr2R 21145070 chr2R 19860922..19861165 2012..2255 1220 100 Plus
chr2R 21145070 chr2R 19859286..19859525 625..864 1155 98.8 Plus
chr2R 21145070 chr2R 19859601..19859781 865..1045 875 98.9 Plus
chr2R 21145070 chr2R 19858545..19858652 1..108 540 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23973759..23974468 1045..1754 3520 99.7 Plus
2R 25286936 2R 23972632..23973149 108..625 2590 100 Plus
2R 25286936 2R 23975140..23975409 2254..2523 1350 100 Plus
2R 25286936 2R 23974513..23974776 1748..2011 1320 100 Plus
2R 25286936 2R 23974842..23975085 2012..2255 1220 100 Plus
2R 25286936 2R 23973205..23973444 625..864 1200 100 Plus
2R 25286936 2R 23973520..23973700 865..1045 890 99.4 Plus
2R 25286936 2R 23972464..23972571 1..108 540 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23974958..23975667 1045..1754 3520 99.7 Plus
2R 25260384 2R 23973831..23974348 108..625 2590 100 Plus
2R 25260384 2R 23976339..23976608 2254..2523 1350 100 Plus
2R 25260384 2R 23975712..23975975 1748..2011 1320 100 Plus
2R 25260384 2R 23976041..23976284 2012..2255 1220 100 Plus
2R 25260384 2R 23974404..23974643 625..864 1200 100 Plus
2R 25260384 2R 23974719..23974899 865..1045 890 99.4 Plus
2R 25260384 2R 23973663..23973770 1..108 540 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:12:39 has no hits.

LD21042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:13:44 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19858545..19858652 1..108 100 -> Plus
chr2R 19858714..19859230 109..625 99 -> Plus
chr2R 19859287..19859525 626..864 98 -> Plus
chr2R 19859601..19859781 865..1045 98 -> Plus
chr2R 19859841..19860542 1046..1747 99 -> Plus
chr2R 19860594..19860857 1748..2011 99 -> Plus
chr2R 19860922..19861163 2012..2253 100 -> Plus
chr2R 19861220..19861488 2254..2522 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:16 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 1..2409 46..2454 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:19 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 1..2409 46..2454 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:07:02 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 1..2409 46..2454 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:50:23 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 1..2409 46..2454 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:13 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 1..2409 46..2454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:56:01 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 32..2553 1..2522 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:18 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 32..2553 1..2522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:02 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 34..2555 1..2522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:50:24 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 32..2553 1..2522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:13 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
mr-RA 34..2555 1..2522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:44 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23972464..23972571 1..108 100 -> Plus
2R 23972633..23973149 109..625 100 -> Plus
2R 23973206..23973444 626..864 100 -> Plus
2R 23973520..23973700 865..1045 99 -> Plus
2R 23973760..23974461 1046..1747 100 -> Plus
2R 23974513..23974776 1748..2011 100 -> Plus
2R 23974842..23975083 2012..2253 100 -> Plus
2R 23975140..23975408 2254..2522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:44 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23972464..23972571 1..108 100 -> Plus
2R 23972633..23973149 109..625 100 -> Plus
2R 23973206..23973444 626..864 100 -> Plus
2R 23973520..23973700 865..1045 99 -> Plus
2R 23973760..23974461 1046..1747 100 -> Plus
2R 23974513..23974776 1748..2011 100 -> Plus
2R 23974842..23975083 2012..2253 100 -> Plus
2R 23975140..23975408 2254..2522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:44 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23972464..23972571 1..108 100 -> Plus
2R 23972633..23973149 109..625 100 -> Plus
2R 23973206..23973444 626..864 100 -> Plus
2R 23973520..23973700 865..1045 99 -> Plus
2R 23973760..23974461 1046..1747 100 -> Plus
2R 23974513..23974776 1748..2011 100 -> Plus
2R 23974842..23975083 2012..2253 100 -> Plus
2R 23975140..23975408 2254..2522 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:02 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19859987..19860094 1..108 100 -> Plus
arm_2R 19860156..19860672 109..625 100 -> Plus
arm_2R 19860729..19860967 626..864 100 -> Plus
arm_2R 19861043..19861223 865..1045 99 -> Plus
arm_2R 19861283..19861984 1046..1747 100 -> Plus
arm_2R 19862036..19862299 1748..2011 100 -> Plus
arm_2R 19862365..19862606 2012..2253 100 -> Plus
arm_2R 19862663..19862931 2254..2522 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:24 Download gff for LD21042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23973850..23974366 109..625 100 -> Plus
2R 23974423..23974661 626..864 100 -> Plus
2R 23974737..23974917 865..1045 99 -> Plus
2R 23974977..23975678 1046..1747 100 -> Plus
2R 23975730..23975993 1748..2011 100 -> Plus
2R 23976059..23976300 2012..2253 100 -> Plus
2R 23976357..23976625 2254..2522 100   Plus
2R 23973681..23973788 1..108 100 -> Plus

LD21042.pep Sequence

Translation from 45 to 2453

> LD21042.pep
MCDFDALWADVLRIFPVLGGANAVSNDPVEENVFQNVRQHLMVLGSIDTF
AAVVDLEIQSTIRNVLVPKFWKHIHDGLVSSKLQGWINDQALAIEALPDK
NGLFTQFIDAINELHDSFQSLMQVKPRLIQLVGAETKPTAKTVKLMQEEG
IKNCLRDCLLAQLPPNFSVVVGAFYWVHFKLFTKASNLALTTVDSDVFDE
LLCVGCNFEAEQCCCQRLTDMVNKTNMKLFEMNLIDRLTGSALTALIKLK
IKEHISDTCMGIFDRSHLKQLETWLSDVIMSWLTNIFTEWKSKDSISDIE
VPESVKSFKVKLTYFMYETFAQSVIGQFFSIIIDYPDSIPAIDDLKICME
KIDMRVYLTESLRNSLEARILHPGVNTMDILTGYVAAIKAIRHLDSTGVI
LEMVTAPIKDYLRKRNDTVRRVVTGLTEEGPTDLSEELAKGETIKECKDS
GTDEFSNWENWQPDPFGIDASIMQYNSSRKMRSADIISMVVDIYGSKELF
MTEYRNLMADRLLAQLDFNSEKEIRNLELLKIRFGESLLHSCEVMLKDVT
DSKRINAHIHSDGDRTENQLFDISSLIVSAQFWPSFNKESLQLPEEIENE
FKKYTKAYEAYKGNRTLNWRTVTGRVNIEIEIGDRTMEMVVSPILAVIIY
HFQTKNEWTIEDLSSITKVPASALRRRLSFWQNHGLISETTPGIFTLLEK
ESEKSQYEDMSLAEADEEDLESAMASASDQREEELQVFWSYIVGMLTNLD
SMPIDRIHQMLKLFASHSGGVEFTQDELKHFLQRKVREHKLIFSGGVYQL
AK*

LD21042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12886-PA 803 GF12886-PA 1..803 1..802 3801 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22916-PA 802 GG22916-PA 1..802 1..802 4092 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20172-PA 792 GH20172-PA 1..792 1..802 3183 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
mr-PA 802 CG3060-PA 1..802 1..802 4132 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20702-PA 793 GI20702-PA 1..793 1..802 3190 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11645-PA 802 GL11645-PA 1..802 1..802 3682 84.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15898-PA 802 GA15898-PA 1..802 1..802 3681 84.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16075-PA 802 GM16075-PA 1..802 1..802 4233 98 Plus
Dsec\GM11953-PA 258 GM11953-PA 1..258 545..802 1347 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11818-PA 802 GD11818-PA 1..802 1..802 4247 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21890-PA 789 GJ21890-PA 1..789 1..802 3156 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15727-PA 808 GK15727-PA 1..808 1..802 3469 78.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14353-PA 802 GE14353-PA 1..802 1..802 4124 95.5 Plus

LD21042.hyp Sequence

Translation from 45 to 2453

> LD21042.hyp
MCDFDALWADVLRIFPVLGGANAVSNDPVEENVFQNVRQHLMVLGSIDTF
AAVVDLEIQSTIRNVLVPKFWKHIHDGLVSSKLQGWINDQALAIEALPDK
NGLFTQFIDAINELHDSFQSLMQVKPRLIQLVGAETKPTAKTVKLMQEEG
IKNCLRDCLLAQLPPNFSVVVGAFYWVHFKLFTKASNLALTTVDSDVFDE
LLCVGCNFEAEQCCCQRLTDMVNKTNMKLFEMNLIDRLTGSALTALIKLK
IKEHISDTCMGIFDRSHLKQLETWLSDVIMSWLTNIFTEWKSKDSISDIE
VPESVKSFKVKLTYFMYETFAQSVIGQFFSIIIDYPDSIPAIDDLKICME
KIDMRVYLTESLRNSLEARILHPGVNTMDILTGYVAAIKAIRHLDSTGVI
LEMVTAPIKDYLRKRNDTVRRVVTGLTEEGPTDLSEELAKGETIKECKDS
GTDEFSNWENWQPDPFGIDASIMQYNSSRKMRSADIISMVVDIYGSKELF
MTEYRNLMADRLLAQLDFNSEKEIRNLELLKIRFGESLLHSCEVMLKDVT
DSKRINAHIHSDGDRTENQLFDISSLIVSAQFWPSFNKESLQLPEEIENE
FKKYTKAYEAYKGNRTLNWRTVTGRVNIEIEIGDRTMEMVVSPILAVIIY
HFQTKNEWTIEDLSSITKVPASALRRRLSFWQNHGLISETTPGIFTLLEK
ESEKSQYEDMSLAEADEEDLESAMASASDQREEELQVFWSYIVGMLTNLD
SMPIDRIHQMLKLFASHSGGVEFTQDELKHFLQRKVREHKLIFSGGVYQL
AK*

LD21042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
mr-PA 802 CG3060-PA 1..802 1..802 4132 100 Plus