Clone LD21074 Report

Search the DGRC for LD21074

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:210
Well:74
Vector:pBS SK-
Associated Gene/TranscriptPdcd4-RA
Protein status:LD21074.pep: gold
Sequenced Size:2365

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10990 2003-01-01 Sim4 clustering to Release 3
CG10990 2008-04-29 Release 5.5 accounting
CG10990 2008-08-15 Release 5.9 accounting
CG10990 2008-12-18 5.12 accounting

Clone Sequence Records

LD21074.complete Sequence

2365 bp (2365 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023835

> LD21074.complete
TTTTCACGGCGTGAACAACAGTGTGCGTTATTGGTTCCTTATTCTGCGGT
TCTTCAATCCTTTTTGTTCCAATCCTACTGAAAAAGAAATCAAAAGTTCA
CATCGTTAAGCGGCAAAAACAACAAAAGCGAAGGTGAATAAGGCATAAAA
AACAGCACACGCAACTGAATAGTTGTGGGTGTGCGAGTGTGTGTATGCGC
GTGTGAAGGAGCCTTTTAGTAAACACTCACACACTTGTGTATTTTTTTTC
TGTGAGACACAAGATATTTGAGTGCATTTTTTGCCATTTGCCTTGCCAAC
CCCTCTCCCCCGCACGCATATAAGAAGAGAAAGAGAGGCAGGGAAAAAAT
AAAGGAGCCCACGAAGAAAAGCAACAACTATTAAACAGGCTCCTCATCGT
ATAAAAGCAGCGCAGCCGCCGTCAACGTCAACTGCAGTGGGCCAACGTCG
TTGCAGTCGTGTCGTTAGTTTTTGTTCTTGTTGCAGCAGCAGCATCAAAG
ACAGAAGTAGAGAGAGCGAGCGAAACAGCCGGAGAGACAAAACAAAAAGC
ACTTAGAAAAGAAAAGAAGCCACGCACCTGGTGCCAGAGTACAAAACCCA
AACATCTACAATATCCGAGCTGTGCATTCCAAGGAGATAACGAGGAACGT
ATATATCGAAGAGTTTGAGAACATCGTCAGGATGGAAGTGGAATCGAATA
ACAAACGCGCCACCAACGGCGGCCGTCACTTCACTCCACCGTCGGACTCC
GATTCCAAGGAGAGTTCCGTCGAGCGGGAGCTGAACGAAGAGATCGAGGC
GGTGGAGCTAAATGGGAGTGGTGGTGGCGGCCACTCGAACGGCCATGTTA
AGAAGCTGATGGCTGTCGAGGATGGCAGGATTAAGCGTAAGGCCAAGCGG
TTAATCCAAAGACAGAATAGTGGTTCTGGCGGCAGTGCCAATCAAACTAA
TGGCAATGGAGCTGCTGGCGCTGGTGGAGCACATGGAGCAAGTGTAATGC
CGCTGGGAATCAACAGAATTATGCCGTCGCCCGGTGGCTATGTGGTGCCA
CATCGACGCTGGAAGAATAGCCGGCGTTCGCGAACCATCAATCGTGGTCG
AGGACTGCCCAAAAAGGGTGGTGGCGGCGGCAAGGGCGTCTGGGGATTGC
CCGGTTCCGAGGCTCTGGCCGAGGTCTATGAGGACGAGAATGATCCTAAC
TACGATAGTGAGTGCAACGATCGTAATGTGGAGCTGCGCGAGGTGATCAC
TGAGATAACACGCGAGGAGTTCTTTAAGCTGGCGGAGCCCATTGTCTTGG
AGTACTACGAGCACGGGGATCCGCATGAGGTGGCACTGAGCTTTGATGAG
ATACTGCAGGCACCGATGCGCGAGCACGTCACCAGCATTCTCGTGGAGAT
CGCCATGGATCACAAGGATTCGCAGCGCGAGATGACCTCGGTGCTGATCT
CCGATCTCTACGGACGCGTTATTACCGGCAAGGATATTGAGAAGGGATTC
AATATGCTGTTGGCCAATCTGCCGGATCTCGTCCTGGACACTCCAGAGGC
GCCAATCATGCTCGGCAATTTTATGGCCCGCGCCGTGGCCGATGACTGCA
TTCCGCCCAAGTTTGTGGCCAAGTCGGGGGAGGAGCTAAGACATTTGGGA
CTGGGCGAACATGCCGAACAGGCCCTTCGCCGTGCTGACTCGCTTATCTA
CAAGCATGTGTGGGCCCATTTGGACAATGTCTGGGGCATGGGTGGGCCAC
TGCGTCCAGTGAAGACAATCACCATGCAGATGGAGCTGCTGCTCAAGGAG
TACTTATCATCGCGTGACGTAGCCGAGGCACAGCGCTGTCTGCGTGCCCT
CGAGGTGCCACACTATCATCACGAGCTTGTCTACGAGGCGATTGTCATGA
CACTGGAGTCACTTAGCCAGACCACCGAGGAGGCCATGTGCGAGCTGCTC
AAGCAGCTAGATCTCACCTGCCTGGTGCTGCCCGCGGGCATGGAGCAGGG
TTTCTTGCGCGCCTTCGACGACATGGCCGACATCGTTTTGGATGTGCCCC
TGGCCTATATAATACTCGATCGCTTCGTCGAGCGCTGCAATCGCGCCGGA
TTCCTAACCGACAAGATTATAAACAATGTGCCATCGCGCGGACGCAAGCG
TTTCGTTTCGGAGGGCGACGGCGGCCACGTGAAGCCGACTACCTTCACCA
TGCGTGATTAAATCATAGGGACAACGGGGACGTTATATGCTGCACATGCT
TATATGACCACTGCCCCCAGCCACCCAATGACAACTAGAGGAGCAACAAG
AGAGAAGCAAACATTAAACAAAAACAAAAAAAAAAACACCAAATTACAAA
AAAAAAAAAAAAAAA

LD21074.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10990.c 3486 CG10990.c 150..2508 1..2359 11795 100 Plus
CG10990.e 4198 CG10990.e 150..2508 1..2359 11795 100 Plus
CG10990-RA 2800 CG10990-RA 150..2508 1..2359 11795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13641315..13642761 1999..553 7235 100 Minus
chrX 22417052 chrX 13645560..13646115 556..1 2780 100 Minus
chrX 22417052 chrX 13637369..13637579 2347..2138 1005 99.5 Minus
chrX 22417052 chrX 13641046..13641187 2138..1997 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13750585..13752031 1999..553 7235 100 Minus
X 23542271 X 13754830..13755385 556..1 2780 100 Minus
X 23542271 X 13746628..13746849 2359..2138 1110 100 Minus
X 23542271 X 13750316..13750457 2138..1997 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13758683..13760129 1999..553 7235 100 Minus
X 23527363 X 13762928..13763483 556..1 2780 100 Minus
X 23527363 X 13754726..13754947 2359..2138 1110 100 Minus
X 23527363 X 13758414..13758555 2138..1997 710 100 Minus
Blast to na_te.dros performed 2019-03-16 09:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2434 483..565 129 63.1 Plus

LD21074.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:30:28 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13637404..13637578 2139..2313 100 <- Minus
chrX 13641046..13641185 1999..2138 100 <- Minus
chrX 13641316..13642757 557..1998 100 <- Minus
chrX 13645560..13646115 1..556 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:19 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RB 1..1530 682..2211 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:38 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RB 1..1530 682..2211 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:02:03 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
Pdcd4-RB 1..1530 682..2211 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:52 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RB 1..1530 682..2211 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:57 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
Pdcd4-RB 1..1530 682..2211 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:21 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RA 4..2350 1..2347 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:38 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RA 4..2350 1..2347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:02:03 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
Pdcd4-RA 22..2368 1..2347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:52 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
CG10990-RA 4..2350 1..2347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:57 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
Pdcd4-RA 22..2368 1..2347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:28 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
X 13746640..13746848 2139..2347 100 <- Minus
X 13750316..13750455 1999..2138 100 <- Minus
X 13750586..13752027 557..1998 100 <- Minus
X 13754830..13755385 1..556 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:28 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
X 13746640..13746848 2139..2347 100 <- Minus
X 13750316..13750455 1999..2138 100 <- Minus
X 13750586..13752027 557..1998 100 <- Minus
X 13754830..13755385 1..556 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:30:28 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
X 13746640..13746848 2139..2347 100 <- Minus
X 13750316..13750455 1999..2138 100 <- Minus
X 13750586..13752027 557..1998 100 <- Minus
X 13754830..13755385 1..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:02:03 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13640673..13640881 2139..2347 100 <- Minus
arm_X 13644349..13644488 1999..2138 100 <- Minus
arm_X 13644619..13646060 557..1998 100 <- Minus
arm_X 13648863..13649418 1..556 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:54 Download gff for LD21074.complete
Subject Subject Range Query Range Percent Splice Strand
X 13754738..13754946 2139..2347 100 <- Minus
X 13758414..13758553 1999..2138 100 <- Minus
X 13758684..13760125 557..1998 100 <- Minus
X 13762928..13763483 1..556 100   Minus

LD21074.pep Sequence

Translation from 681 to 2210

> LD21074.pep
MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGG
HSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGA
HGASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGG
KGVWGLPGSEALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKL
AEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQRE
MTSVLISDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMAR
AVADDCIPPKFVAKSGEELRHLGLGEHAEQALRRADSLIYKHVWAHLDNV
WGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEVPHYHHELV
YEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD
IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHV
KPTTFTMRD*

LD21074.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22345-PA 505 GF22345-PA 1..505 1..509 2169 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19488-PA 506 GG19488-PA 1..506 1..509 2262 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11920-PA 527 GH11920-PA 1..527 1..509 1985 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pdcd4-PD 509 CG10990-PD 1..509 1..509 2654 100 Plus
Pdcd4-PC 509 CG10990-PC 1..509 1..509 2654 100 Plus
Pdcd4-PB 509 CG10990-PB 1..509 1..509 2654 100 Plus
Pdcd4-PA 509 CG10990-PA 1..509 1..509 2654 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14659-PA 510 GI14659-PA 1..510 1..509 2054 80.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19848-PA 505 GL19848-PA 3..505 1..509 1995 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27356-PA 505 GA27356-PA 3..505 1..509 2002 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17592-PA 301 GM17592-PA 1..275 1..278 1183 93.2 Plus
Dsec\GM17593-PA 62 GM17593-PA 1..62 448..509 337 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24516-PA 266 GD24516-PA 69..266 289..486 1055 98.5 Plus
Dsim\GD24516-PA 266 GD24516-PA 1..69 1..69 329 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19313-PA 517 GJ19313-PA 1..517 1..509 1993 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16207-PA 689 GK16207-PA 181..689 26..509 1915 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16141-PA 505 GE16141-PA 1..505 1..509 2219 92.5 Plus

LD21074.hyp Sequence

Translation from 681 to 2210

> LD21074.hyp
MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGG
HSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGA
HGASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGG
KGVWGLPGSEALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKL
AEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQRE
MTSVLISDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMAR
AVADDCIPPKFVAKSGEELRHLGLGEHAEQALRRADSLIYKHVWAHLDNV
WGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEVPHYHHELV
YEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD
IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHV
KPTTFTMRD*

LD21074.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pdcd4-PD 509 CG10990-PD 1..509 1..509 2654 100 Plus
Pdcd4-PC 509 CG10990-PC 1..509 1..509 2654 100 Plus
Pdcd4-PB 509 CG10990-PB 1..509 1..509 2654 100 Plus
Pdcd4-PA 509 CG10990-PA 1..509 1..509 2654 100 Plus