BDGP Sequence Production Resources |
Search the DGRC for LD21074
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 210 |
Well: | 74 |
Vector: | pBS SK- |
Associated Gene/Transcript | Pdcd4-RA |
Protein status: | LD21074.pep: gold |
Sequenced Size: | 2365 |
Gene | Date | Evidence |
---|---|---|
CG10990 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10990 | 2008-04-29 | Release 5.5 accounting |
CG10990 | 2008-08-15 | Release 5.9 accounting |
CG10990 | 2008-12-18 | 5.12 accounting |
2365 bp (2365 high quality bases) assembled on 2005-08-09
GenBank Submission: BT023835
> LD21074.complete TTTTCACGGCGTGAACAACAGTGTGCGTTATTGGTTCCTTATTCTGCGGT TCTTCAATCCTTTTTGTTCCAATCCTACTGAAAAAGAAATCAAAAGTTCA CATCGTTAAGCGGCAAAAACAACAAAAGCGAAGGTGAATAAGGCATAAAA AACAGCACACGCAACTGAATAGTTGTGGGTGTGCGAGTGTGTGTATGCGC GTGTGAAGGAGCCTTTTAGTAAACACTCACACACTTGTGTATTTTTTTTC TGTGAGACACAAGATATTTGAGTGCATTTTTTGCCATTTGCCTTGCCAAC CCCTCTCCCCCGCACGCATATAAGAAGAGAAAGAGAGGCAGGGAAAAAAT AAAGGAGCCCACGAAGAAAAGCAACAACTATTAAACAGGCTCCTCATCGT ATAAAAGCAGCGCAGCCGCCGTCAACGTCAACTGCAGTGGGCCAACGTCG TTGCAGTCGTGTCGTTAGTTTTTGTTCTTGTTGCAGCAGCAGCATCAAAG ACAGAAGTAGAGAGAGCGAGCGAAACAGCCGGAGAGACAAAACAAAAAGC ACTTAGAAAAGAAAAGAAGCCACGCACCTGGTGCCAGAGTACAAAACCCA AACATCTACAATATCCGAGCTGTGCATTCCAAGGAGATAACGAGGAACGT ATATATCGAAGAGTTTGAGAACATCGTCAGGATGGAAGTGGAATCGAATA ACAAACGCGCCACCAACGGCGGCCGTCACTTCACTCCACCGTCGGACTCC GATTCCAAGGAGAGTTCCGTCGAGCGGGAGCTGAACGAAGAGATCGAGGC GGTGGAGCTAAATGGGAGTGGTGGTGGCGGCCACTCGAACGGCCATGTTA AGAAGCTGATGGCTGTCGAGGATGGCAGGATTAAGCGTAAGGCCAAGCGG TTAATCCAAAGACAGAATAGTGGTTCTGGCGGCAGTGCCAATCAAACTAA TGGCAATGGAGCTGCTGGCGCTGGTGGAGCACATGGAGCAAGTGTAATGC CGCTGGGAATCAACAGAATTATGCCGTCGCCCGGTGGCTATGTGGTGCCA CATCGACGCTGGAAGAATAGCCGGCGTTCGCGAACCATCAATCGTGGTCG AGGACTGCCCAAAAAGGGTGGTGGCGGCGGCAAGGGCGTCTGGGGATTGC CCGGTTCCGAGGCTCTGGCCGAGGTCTATGAGGACGAGAATGATCCTAAC TACGATAGTGAGTGCAACGATCGTAATGTGGAGCTGCGCGAGGTGATCAC TGAGATAACACGCGAGGAGTTCTTTAAGCTGGCGGAGCCCATTGTCTTGG AGTACTACGAGCACGGGGATCCGCATGAGGTGGCACTGAGCTTTGATGAG ATACTGCAGGCACCGATGCGCGAGCACGTCACCAGCATTCTCGTGGAGAT CGCCATGGATCACAAGGATTCGCAGCGCGAGATGACCTCGGTGCTGATCT CCGATCTCTACGGACGCGTTATTACCGGCAAGGATATTGAGAAGGGATTC AATATGCTGTTGGCCAATCTGCCGGATCTCGTCCTGGACACTCCAGAGGC GCCAATCATGCTCGGCAATTTTATGGCCCGCGCCGTGGCCGATGACTGCA TTCCGCCCAAGTTTGTGGCCAAGTCGGGGGAGGAGCTAAGACATTTGGGA CTGGGCGAACATGCCGAACAGGCCCTTCGCCGTGCTGACTCGCTTATCTA CAAGCATGTGTGGGCCCATTTGGACAATGTCTGGGGCATGGGTGGGCCAC TGCGTCCAGTGAAGACAATCACCATGCAGATGGAGCTGCTGCTCAAGGAG TACTTATCATCGCGTGACGTAGCCGAGGCACAGCGCTGTCTGCGTGCCCT CGAGGTGCCACACTATCATCACGAGCTTGTCTACGAGGCGATTGTCATGA CACTGGAGTCACTTAGCCAGACCACCGAGGAGGCCATGTGCGAGCTGCTC AAGCAGCTAGATCTCACCTGCCTGGTGCTGCCCGCGGGCATGGAGCAGGG TTTCTTGCGCGCCTTCGACGACATGGCCGACATCGTTTTGGATGTGCCCC TGGCCTATATAATACTCGATCGCTTCGTCGAGCGCTGCAATCGCGCCGGA TTCCTAACCGACAAGATTATAAACAATGTGCCATCGCGCGGACGCAAGCG TTTCGTTTCGGAGGGCGACGGCGGCCACGTGAAGCCGACTACCTTCACCA TGCGTGATTAAATCATAGGGACAACGGGGACGTTATATGCTGCACATGCT TATATGACCACTGCCCCCAGCCACCCAATGACAACTAGAGGAGCAACAAG AGAGAAGCAAACATTAAACAAAAACAAAAAAAAAAACACCAAATTACAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13641315..13642761 | 1999..553 | 7235 | 100 | Minus |
chrX | 22417052 | chrX | 13645560..13646115 | 556..1 | 2780 | 100 | Minus |
chrX | 22417052 | chrX | 13637369..13637579 | 2347..2138 | 1005 | 99.5 | Minus |
chrX | 22417052 | chrX | 13641046..13641187 | 2138..1997 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13750585..13752031 | 1999..553 | 7235 | 100 | Minus |
X | 23542271 | X | 13754830..13755385 | 556..1 | 2780 | 100 | Minus |
X | 23542271 | X | 13746628..13746849 | 2359..2138 | 1110 | 100 | Minus |
X | 23542271 | X | 13750316..13750457 | 2138..1997 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13758683..13760129 | 1999..553 | 7235 | 100 | Minus |
X | 23527363 | X | 13762928..13763483 | 556..1 | 2780 | 100 | Minus |
X | 23527363 | X | 13754726..13754947 | 2359..2138 | 1110 | 100 | Minus |
X | 23527363 | X | 13758414..13758555 | 2138..1997 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2434 | 483..565 | 129 | 63.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13637404..13637578 | 2139..2313 | 100 | <- | Minus |
chrX | 13641046..13641185 | 1999..2138 | 100 | <- | Minus |
chrX | 13641316..13642757 | 557..1998 | 100 | <- | Minus |
chrX | 13645560..13646115 | 1..556 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RB | 1..1530 | 682..2211 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RB | 1..1530 | 682..2211 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdcd4-RB | 1..1530 | 682..2211 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RB | 1..1530 | 682..2211 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdcd4-RB | 1..1530 | 682..2211 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RA | 4..2350 | 1..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RA | 4..2350 | 1..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdcd4-RA | 22..2368 | 1..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10990-RA | 4..2350 | 1..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdcd4-RA | 22..2368 | 1..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13746640..13746848 | 2139..2347 | 100 | <- | Minus |
X | 13750316..13750455 | 1999..2138 | 100 | <- | Minus |
X | 13750586..13752027 | 557..1998 | 100 | <- | Minus |
X | 13754830..13755385 | 1..556 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13746640..13746848 | 2139..2347 | 100 | <- | Minus |
X | 13750316..13750455 | 1999..2138 | 100 | <- | Minus |
X | 13750586..13752027 | 557..1998 | 100 | <- | Minus |
X | 13754830..13755385 | 1..556 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13746640..13746848 | 2139..2347 | 100 | <- | Minus |
X | 13750316..13750455 | 1999..2138 | 100 | <- | Minus |
X | 13750586..13752027 | 557..1998 | 100 | <- | Minus |
X | 13754830..13755385 | 1..556 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13640673..13640881 | 2139..2347 | 100 | <- | Minus |
arm_X | 13644349..13644488 | 1999..2138 | 100 | <- | Minus |
arm_X | 13644619..13646060 | 557..1998 | 100 | <- | Minus |
arm_X | 13648863..13649418 | 1..556 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13754738..13754946 | 2139..2347 | 100 | <- | Minus |
X | 13758414..13758553 | 1999..2138 | 100 | <- | Minus |
X | 13758684..13760125 | 557..1998 | 100 | <- | Minus |
X | 13762928..13763483 | 1..556 | 100 | Minus |
Translation from 681 to 2210
> LD21074.pep MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGG HSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGA HGASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGG KGVWGLPGSEALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKL AEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQRE MTSVLISDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMAR AVADDCIPPKFVAKSGEELRHLGLGEHAEQALRRADSLIYKHVWAHLDNV WGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEVPHYHHELV YEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHV KPTTFTMRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22345-PA | 505 | GF22345-PA | 1..505 | 1..509 | 2169 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19488-PA | 506 | GG19488-PA | 1..506 | 1..509 | 2262 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11920-PA | 527 | GH11920-PA | 1..527 | 1..509 | 1985 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdcd4-PD | 509 | CG10990-PD | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PC | 509 | CG10990-PC | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PB | 509 | CG10990-PB | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PA | 509 | CG10990-PA | 1..509 | 1..509 | 2654 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14659-PA | 510 | GI14659-PA | 1..510 | 1..509 | 2054 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19848-PA | 505 | GL19848-PA | 3..505 | 1..509 | 1995 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27356-PA | 505 | GA27356-PA | 3..505 | 1..509 | 2002 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17592-PA | 301 | GM17592-PA | 1..275 | 1..278 | 1183 | 93.2 | Plus |
Dsec\GM17593-PA | 62 | GM17593-PA | 1..62 | 448..509 | 337 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24516-PA | 266 | GD24516-PA | 69..266 | 289..486 | 1055 | 98.5 | Plus |
Dsim\GD24516-PA | 266 | GD24516-PA | 1..69 | 1..69 | 329 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19313-PA | 517 | GJ19313-PA | 1..517 | 1..509 | 1993 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16207-PA | 689 | GK16207-PA | 181..689 | 26..509 | 1915 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16141-PA | 505 | GE16141-PA | 1..505 | 1..509 | 2219 | 92.5 | Plus |
Translation from 681 to 2210
> LD21074.hyp MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGG HSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGA HGASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGG KGVWGLPGSEALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKL AEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQRE MTSVLISDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMAR AVADDCIPPKFVAKSGEELRHLGLGEHAEQALRRADSLIYKHVWAHLDNV WGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEVPHYHHELV YEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHV KPTTFTMRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdcd4-PD | 509 | CG10990-PD | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PC | 509 | CG10990-PC | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PB | 509 | CG10990-PB | 1..509 | 1..509 | 2654 | 100 | Plus |
Pdcd4-PA | 509 | CG10990-PA | 1..509 | 1..509 | 2654 | 100 | Plus |