Clone LD21091 Report

Search the DGRC for LD21091

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:210
Well:91
Vector:pBS SK-
Associated Gene/TranscriptAbp1-RA
Protein status:LD21091.pep: gold
Sequenced Size:2528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10083 2003-01-01 Sim4 clustering to Release 3
CG10083 2004-12-02 Blastp of sequenced clone
CG10083 2008-04-29 Release 5.5 accounting
CG10083 2008-08-15 Release 5.9 accounting
CG10083 2008-12-18 5.12 accounting

Clone Sequence Records

LD21091.complete Sequence

2528 bp (2528 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021389

> LD21091.complete
CCCAGCTCTAGTTTGTTGTTGCAAAAAAAGTGTGTGGGTCGCCGCCAGCG
ATCGAATATTTTAAAATTCCAATCAAATTGGTTAATTGGGGAGTTGCAAT
TGCTTGAGCGTTAAGTTAAACCTATTTCTGCACGCATAACTCGAAGGATT
AAGGTGGAAAAGTGGAATTTGGAAAGCCGCTGGAAATTCGCACATACTGG
AAAATCAATCACCCACTATCCCATTGTTCTGCTTGTGTTTGTGTACGTCT
GTGTGCCTTTGTGAGGCGGCTGCACTTAATTAAAATTTAAGACAAGACAA
CCCAAGCAAATTTGGAGTCTTCGCGAGGCGTTGGCTTTCACTTGACGAAG
AGGGCACCCCGATAAGGCGACCCAGTGAAAGCTGGCCAAGATCTCGCTGC
TCAAGGTCGTTGTCAGTCTGGAATTATGGCCGTCAGCTTCGAGAAGAATC
GGGCGCAAATAGTGGCCGCCTGGAAGGATGTGCTGGACGATAAGAGCGAC
ACGAACTGGTCCCTCTTTGGCTACGAGGGTCAGACCAACGAGCTGAAGGT
GGTGGCCACCGGCGATGGCGGCGTGGATGAGCTAAACGAAGACCTAAATA
GCGGCAAGATTATGTACGCCTTCGTCCGAATCGAAGACCCCAAAACGGGC
CTCAACAAGTACTTGCTCATCAACTGGCAGGGCGAGGGCGCACCTGTTCT
ACGCAAGGGTACCTGCGCCAACCACATACGTGATGTGAGTAATTTGCTGT
CCGGCGCTCACCTTACCATCAATGCCCGGAACGAGGACGATATTGACTTG
GATCGGCTTCTCAAGAAGCTGAGCACCGTGAGCTCAGCCTACAGCTTTAA
GGAACCTCGAGGCGCCATGGAGGAGCAGAAGGCGCCGGTGGGAACCAACT
ATACTCGGGTCATTCCCACCAAGGAGTTAAACGCCAGCGTTATGCAGGAC
TTCTGGAAAAAGGAGGAGGCCGAGGAGAAATTGCGACAGGAGGCAGAGAA
GGAATCCAAGCGGCTTGAGCTTCAAAAGTTGGAGCAGGAGCAACGTAGTC
GCGAGGAGAAGGAGCACAAGGAGCGGGAGAAGTTGGTCATAAGCACCACC
AAGCTCCAGCCGGCCCACGTACCCATCAAAACGTCACCGCAACCTTTGAG
CCCTGAGAAAACTGCACCAGGATTTGCCAACAATCTGACCGATGCGGAGC
GCATGCGTCAGGCGAGGAACCAGGAGGCCCGCGAATTGATTGGCTCTCGT
GTGGGTGCTGCCAAGGCCATGTTTACAAAGCACACGAGCGAGGGACAACT
TCAGTCTAAACTAAATACGCAACCGCCGGCCAAACCAGCTCGCAACTCGA
TTGCCCAGCGCATCAACGTTTTCAACCAAAACCAGCCTCAAGATGCACCT
GTGCCTTCACCACCACGCGCTGCGTCCCCTGCCAAACCGTTGCCTGTAGA
GGCTCCCGAACCAGTAGTCCCCGCTCCAGCTATAGCTCCTGCTGCTCCCG
TGGCTGCCGAGGTTGTTTCCACAATAGCGGAGGTGGAGGAGTCGCAACCG
GTAGACGATTTGCCACTGGCCCATGAGAGCGAACAGTTCTCGACTATCAA
GCGATCACCCCATAGTAAATCGAACTCGCTGCAGTCTCAGTCGCCCGACG
AGACCACCTCTTCCAATGAAACAGACACCGCTGTTTCCCAGGAACAGGAA
GAGGAGGTCCGCACCAAGGTGTCAGTCACCGTGCAGCAGTCGCAATCGGT
CAAGTCGAGCGGCATGAGCACACTCGAAAGGAATGCATTAACGGATTTGG
TAAACGAGGACGATTTTATCTGCCAGGAGACCTTAGGCGATCTGGGACAA
CGGGCACGAGCTCTATACGATTACCAGGCAGCCGACGAGACAGAGATCAC
TTTCGATCCAGGCGATGTCATTACGCATATCGATCAAATCGACGAGGGAT
GGTGGCAGGGACTGGGCCCTGATGGAACCTATGGACTGTTTCCGGCAAAC
TATGTCGAGATCATCAACTAGGGAAACCCAAGTGCCAAGCAGCTGGGACG
CCCTTTTGCTAAATATCTACACCAATGCAGCTAGCAACTATATTTTGGAT
CCGGACTATAGCTACTTAAACACTTTACCCCATAATCTTGAACAATAATG
CGATACACCTAGAAGAGATTCAACGATGACTAAATGCGACTATAAGATTT
TTATCGTACATCACGCGTCTGTTTTTTATCTACATACATATTATTATATA
ACGTATAATCCATGCCACATATGCAACCCTATCATACGTTGTTCCCATTT
GTATACATATTATATCATTGTTTGGCCTCGATTGCCGAAGCCGTGTTGCG
TCCTTTTAAAATGTTCTTAGGATACATACAAAGTAACCACTTAGTCAGTA
TTTAAGGCCCGCTCCATTCCCGATCCAGGGTTCTTTTGTATATGTATTAT
TGATCGAGATTTATAACCTTTTCGATAATAAACTTTGATAATTGTGCAAC
CGAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21091.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10083-RA 2550 CG10083-RA 20..2523 1..2504 12520 100 Plus
stv-RB 2577 stv-RB 2526..2577 2504..2453 260 100 Minus
stv-RC 2655 stv-RC 2604..2655 2504..2453 260 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13473748..13474461 2502..1789 3540 99.7 Minus
chr3L 24539361 chr3L 13475817..13476497 681..1 3315 99.1 Minus
chr3L 24539361 chr3L 13474525..13475003 1788..1310 2380 99.8 Minus
chr3L 24539361 chr3L 13475302..13475758 1134..678 2270 99.8 Minus
chr3L 24539361 chr3L 13475066..13475242 1309..1133 885 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13483531..13484246 2504..1789 3580 100 Minus
3L 28110227 3L 13485602..13486282 681..1 3405 100 Minus
3L 28110227 3L 13484310..13484788 1788..1310 2395 100 Minus
3L 28110227 3L 13485087..13485543 1134..678 2285 100 Minus
3L 28110227 3L 13484851..13485027 1309..1133 885 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13476631..13477346 2504..1789 3580 100 Minus
3L 28103327 3L 13478702..13479382 681..1 3405 100 Minus
3L 28103327 3L 13477410..13477888 1788..1310 2395 100 Minus
3L 28103327 3L 13478187..13478643 1134..678 2285 100 Minus
3L 28103327 3L 13477951..13478127 1309..1133 885 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:33:25 has no hits.

LD21091.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:23 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13473748..13474461 1789..2502 99 <- Minus
chr3L 13474525..13475003 1310..1788 99 <- Minus
chr3L 13475066..13475242 1133..1309 100 <- Minus
chr3L 13475304..13475755 681..1132 99 <- Minus
chr3L 13475818..13476497 1..680 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:22 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 1..1596 426..2021 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:23:10 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 1..1596 426..2021 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:27 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
Abp1-RA 1..1596 426..2021 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:07:01 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 1..1596 426..2021 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:20 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
Abp1-RA 1..1596 426..2021 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:24:50 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 17..2518 1..2502 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:23:10 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 17..2518 1..2502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:27 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
Abp1-RA 1..2500 3..2502 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:07:01 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
CG10083-RA 17..2518 1..2502 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:20 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
Abp1-RA 1..2500 3..2502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:23 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13483533..13484246 1789..2502 100 <- Minus
3L 13484310..13484788 1310..1788 100 <- Minus
3L 13484851..13485027 1133..1309 100 <- Minus
3L 13485089..13485540 681..1132 100 <- Minus
3L 13485603..13486282 1..680 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:23 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13483533..13484246 1789..2502 100 <- Minus
3L 13484310..13484788 1310..1788 100 <- Minus
3L 13484851..13485027 1133..1309 100 <- Minus
3L 13485089..13485540 681..1132 100 <- Minus
3L 13485603..13486282 1..680 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:23 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13483533..13484246 1789..2502 100 <- Minus
3L 13484310..13484788 1310..1788 100 <- Minus
3L 13484851..13485027 1133..1309 100 <- Minus
3L 13485089..13485540 681..1132 100 <- Minus
3L 13485603..13486282 1..680 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:27 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13476633..13477346 1789..2502 100 <- Minus
arm_3L 13477410..13477888 1310..1788 100 <- Minus
arm_3L 13477951..13478127 1133..1309 100 <- Minus
arm_3L 13478189..13478640 681..1132 100 <- Minus
arm_3L 13478703..13479382 1..680 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:43:33 Download gff for LD21091.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13476633..13477346 1789..2502 100 <- Minus
3L 13477410..13477888 1310..1788 100 <- Minus
3L 13477951..13478127 1133..1309 100 <- Minus
3L 13478189..13478640 681..1132 100 <- Minus
3L 13478703..13479382 1..680 100   Minus

LD21091.pep Sequence

Translation from 425 to 2020

> LD21091.pep
MAVSFEKNRAQIVAAWKDVLDDKSDTNWSLFGYEGQTNELKVVATGDGGV
DELNEDLNSGKIMYAFVRIEDPKTGLNKYLLINWQGEGAPVLRKGTCANH
IRDVSNLLSGAHLTINARNEDDIDLDRLLKKLSTVSSAYSFKEPRGAMEE
QKAPVGTNYTRVIPTKELNASVMQDFWKKEEAEEKLRQEAEKESKRLELQ
KLEQEQRSREEKEHKEREKLVISTTKLQPAHVPIKTSPQPLSPEKTAPGF
ANNLTDAERMRQARNQEARELIGSRVGAAKAMFTKHTSEGQLQSKLNTQP
PAKPARNSIAQRINVFNQNQPQDAPVPSPPRAASPAKPLPVEAPEPVVPA
PAIAPAAPVAAEVVSTIAEVEESQPVDDLPLAHESEQFSTIKRSPHSKSN
SLQSQSPDETTSSNETDTAVSQEQEEEVRTKVSVTVQQSQSVKSSGMSTL
ERNALTDLVNEDDFICQETLGDLGQRARALYDYQAADETEITFDPGDVIT
HIDQIDEGWWQGLGPDGTYGLFPANYVEIIN*

LD21091.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10969-PA 519 GF10969-PA 1..519 1..531 2339 87 Plus
Dana\GF18522-PA 548 GF18522-PA 485..544 470..530 231 65.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13760-PA 533 GG13760-PA 1..533 1..531 2761 97.7 Plus
Dere\GG14937-PA 555 GG14937-PA 266..552 258..531 239 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16682-PA 532 GH16682-PA 1..532 1..531 2273 83.2 Plus
Dgri\GH24032-PA 212 GH24032-PA 43..212 362..531 809 87.6 Plus
Dgri\GH23174-PA 557 GH23174-PA 492..554 468..531 233 62.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Abp1-PA 531 CG10083-PA 1..531 1..531 2719 100 Plus
Cortactin-PD 559 CG3637-PD 248..555 184..530 293 29.1 Plus
Cortactin-PC 559 CG3637-PC 248..555 184..530 293 29.1 Plus
Cortactin-PB 559 CG3637-PB 248..555 184..530 293 29.1 Plus
Cortactin-PA 559 CG3637-PA 248..555 184..530 293 29.1 Plus
Synd-PD 495 CG33094-PD 320..493 355..528 159 27.8 Plus
Synd-PC 495 CG33094-PC 320..493 355..528 159 27.8 Plus
Synd-PB 494 CG33094-PB 320..492 355..528 158 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11368-PA 526 GI11368-PA 1..526 1..531 2338 83.5 Plus
Dmoj\GI10305-PA 553 GI10305-PA 265..550 258..531 269 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20789-PA 531 GL20789-PA 1..531 1..531 2404 90.4 Plus
Dper\GL12684-PA 563 GL12684-PA 498..559 468..530 223 60.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10060-PA 531 GA10060-PA 1..531 1..531 2404 90.6 Plus
Dpse\GA17577-PA 563 GA17577-PA 498..559 468..530 223 60.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24586-PA 531 GM24586-PA 1..531 1..531 2802 99.1 Plus
Dsec\GM15108-PA 549 GM15108-PA 266..546 258..531 245 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12654-PA 531 GD12654-PA 1..531 1..531 2811 99.4 Plus
Dsim\GD20012-PA 549 GD20012-PA 266..546 258..531 245 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11623-PA 524 GJ11623-PA 1..524 1..531 2312 85.6 Plus
Dvir\GJ10159-PA 549 GJ10159-PA 265..546 258..531 251 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17105-PA 534 GK17105-PA 1..534 1..531 2394 86.8 Plus
Dwil\GK13516-PA 557 GK13516-PA 266..557 258..531 244 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20057-PA 531 GE20057-PA 1..531 1..531 2776 97.9 Plus

LD21091.hyp Sequence

Translation from 425 to 2020

> LD21091.hyp
MAVSFEKNRAQIVAAWKDVLDDKSDTNWSLFGYEGQTNELKVVATGDGGV
DELNEDLNSGKIMYAFVRIEDPKTGLNKYLLINWQGEGAPVLRKGTCANH
IRDVSNLLSGAHLTINARNEDDIDLDRLLKKLSTVSSAYSFKEPRGAMEE
QKAPVGTNYTRVIPTKELNASVMQDFWKKEEAEEKLRQEAEKESKRLELQ
KLEQEQRSREEKEHKEREKLVISTTKLQPAHVPIKTSPQPLSPEKTAPGF
ANNLTDAERMRQARNQEARELIGSRVGAAKAMFTKHTSEGQLQSKLNTQP
PAKPARNSIAQRINVFNQNQPQDAPVPSPPRAASPAKPLPVEAPEPVVPA
PAIAPAAPVAAEVVSTIAEVEESQPVDDLPLAHESEQFSTIKRSPHSKSN
SLQSQSPDETTSSNETDTAVSQEQEEEVRTKVSVTVQQSQSVKSSGMSTL
ERNALTDLVNEDDFICQETLGDLGQRARALYDYQAADETEITFDPGDVIT
HIDQIDEGWWQGLGPDGTYGLFPANYVEIIN*

LD21091.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Abp1-PA 531 CG10083-PA 1..531 1..531 2719 100 Plus
Cortactin-PD 559 CG3637-PD 248..555 184..530 293 29.1 Plus
Cortactin-PC 559 CG3637-PC 248..555 184..530 293 29.1 Plus
Cortactin-PB 559 CG3637-PB 248..555 184..530 293 29.1 Plus
Cortactin-PA 559 CG3637-PA 248..555 184..530 293 29.1 Plus