Clone LD21116 Report

Search the DGRC for LD21116

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:16
Vector:pOT2
Associated Gene/TranscriptAats-tyr-RA
Protein status:LD21116.pep: gold
Preliminary Size:2200
Sequenced Size:1785

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4561 2001-01-01 Release 2 assignment
CG4561 2001-07-04 Blastp of sequenced clone
CG4561 2003-01-01 Sim4 clustering to Release 3
Aats-tyr 2008-04-29 Release 5.5 accounting
Aats-tyr 2008-08-15 Release 5.9 accounting
Aats-tyr 2008-12-18 5.12 accounting

Clone Sequence Records

LD21116.complete Sequence

1785 bp (1785 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051662

> LD21116.complete
ACTTTTTGTGATTTCGCAGCGCACGCGAAAATCTGATAAATTCCCTAAAA
AAATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGCTGATAACGCGCAAT
CTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAGATCCTGGCGGAGCG
CGATCTAAAGATCTACTGGGGAACGGCGACGACGGGCAAGCCACATGTCG
CCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCCTGAAGGCAGGATGC
GAAGTGACCATCCTGTTCGCCGATCTCCACGCCTATCTGGACAACATGAA
GGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTACTACGAACAGGTCA
TCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGGAGAAACTGAAGTTC
GTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTACACCCTGGATGTATA
CAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAAGAAGGCGGGCGCAG
AGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCGGTTTGCTTTATCCT
GGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTGGACGCACAATTCGG
TGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGAGAAGTATCTGCCGC
AGTTGGGCTACGAAAAGCGCATTCACTTCATGAATCCCATGGTTCCCGGC
TTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGACTCAAAGATCGATCT
TCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAAGAAGGCTTTCTGTG
AGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCTTCGTGAAGCACGTC
CTGTTCTCGCTGTTCAAGGAAGGCGAAGGCTTCGAGGTTAACCGCGAGGC
GGAGCATGGCGGCGATGTTACCTTCCTGAAATACGAGGATCTGGAGAAGT
ACTACGCGGAGGACAAACTGCACCCGGGTGACCTGAAGGCCACCGTGGAG
AAGTACATCAACCGACTGCTAGATCCCATTCGAAAGGCCTTTGAAAACCC
AGAACTGCAAAAACTGAGTGCTGCTGCTTATCCACCGCCTGCCAAGGTGA
AGGCAGGAGCTGCTCCCGCTGCTGGAGCTGACGAAGATGCACCCCATCGC
CTGGATATCCGCGTGGGCAAGGTCGTCGAGGTGGCCCGTCATCCAGATGC
CGATACTCTATATGTGCTGAAGATAGACTTGGCTGAGGCGCAACCCAGAA
CGATTATTAGTGGCCTGGTGAAGTTTGTCACCGAGGAGGAGCTGAACCAG
CGATTGGTGGCGGTTCTTTGCAACCTGAAGCCGTCCAAGATGCGCGGCAT
CTTGTCCGAGGGCATGGTTCTGTGCACCTCCAACGCTGACCACACGGTGG
TGGAGCCTATTGTGCTGCCAGCCACTGCTACTGCTGGCAGTCGCCTCTCC
TTCGAGGGATTCAGTGGCACGCCCGATGAGCAGCTTAATCCCAAGAAGAA
GGTGTGGGAGAAACTCTCCGCCGACTTCAAGACGAACAGCGATGGACTGG
CCGTGTGGAAGGACAACTTCCTGCTGACGCCCGAGGGCGAAAAGCTTTCC
AGCAAGCTGGCCAACTGCTCCATTAAATAAAACTTTCAACGCCAACCTAC
CTGAGCCGTGTAATACTTACAACTAAGCCGAATGTTCACAAAACAGAAAT
TGCTGCTAATTTATTGATTCCTCTTCGTAAAGAAAATGCATTTTTTAATA
AAGCGCTCAAAAATAAAAAAAAAAAAAAAAAAAAA

LD21116.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1935 Aats-tyr-RA 158..1923 1..1766 8830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16408389..16409080 692..1 3400 99.4 Minus
chr3L 24539361 chr3L 16407134..16407521 1764..1377 1925 99.7 Minus
chr3L 24539361 chr3L 16407960..16408327 1059..692 1840 100 Minus
chr3L 24539361 chr3L 16407574..16407897 1383..1060 1605 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16418604..16419295 692..1 3460 100 Minus
3L 28110227 3L 16417347..16417736 1766..1377 1935 99.7 Minus
3L 28110227 3L 16418175..16418542 1059..692 1840 100 Minus
3L 28110227 3L 16417789..16418112 1383..1060 1620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16411704..16412395 692..1 3460 100 Minus
3L 28103327 3L 16410447..16410836 1766..1377 1935 99.7 Minus
3L 28103327 3L 16411275..16411642 1059..692 1840 100 Minus
3L 28103327 3L 16410889..16411212 1383..1060 1620 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:52:29 has no hits.

LD21116.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:53:07 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16407134..16407514 1384..1764 100 <- Minus
chr3L 16407574..16407897 1060..1383 99 <- Minus
chr3L 16407960..16408326 693..1059 100 <- Minus
chr3L 16408389..16409080 1..692 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:25 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 53..1630 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:50 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 53..1630 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:46 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 53..1630 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:31 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 53..1630 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:19 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 53..1630 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:15 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1764 1..1764 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:49 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1764 1..1764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:46 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 8..1771 1..1764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:31 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1764 1..1764 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:19 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 8..1771 1..1764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:53:07 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16417349..16417729 1384..1764 100 <- Minus
3L 16417789..16418112 1060..1383 100 <- Minus
3L 16418175..16418541 693..1059 100 <- Minus
3L 16418604..16419295 1..692 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:53:07 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16417349..16417729 1384..1764 100 <- Minus
3L 16417789..16418112 1060..1383 100 <- Minus
3L 16418175..16418541 693..1059 100 <- Minus
3L 16418604..16419295 1..692 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:53:07 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16417349..16417729 1384..1764 100 <- Minus
3L 16417789..16418112 1060..1383 100 <- Minus
3L 16418175..16418541 693..1059 100 <- Minus
3L 16418604..16419295 1..692 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:46 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16410449..16410829 1384..1764 100 <- Minus
arm_3L 16410889..16411212 1060..1383 100 <- Minus
arm_3L 16411275..16411641 693..1059 100 <- Minus
arm_3L 16411704..16412395 1..692 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:15 Download gff for LD21116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16410449..16410829 1384..1764 100 <- Minus
3L 16410889..16411212 1060..1383 100 <- Minus
3L 16411275..16411641 693..1059 100 <- Minus
3L 16411704..16412395 1..692 100   Minus

LD21116.hyp Sequence

Translation from 0 to 1629

> LD21116.hyp
LFVISQRTRKSDKFPKKMVGITPAEKKALITRNLQETLGDDKLTKILAER
DLKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMK
APWSLLELRTKYYEQVIKAMLSSIGVPLEKLKFVKGSDYQLSKEYTLDVY
KLSSVVTQHDAKKAGAEVVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFG
GVDQRKIFTFSEKYLPQLGYEKRIHFMNPMVPGLAGGKMSSSEEDSKIDL
LDSPANVKKKLKKAFCEPGNIADNGLLSFVKHVLFSLFKEGEGFEVNREA
EHGGDVTFLKYEDLEKYYAEDKLHPGDLKATVEKYINRLLDPIRKAFENP
ELQKLSAAAYPPPAKVKAGAAPAAGADEDAPHRLDIRVGKVVEVARHPDA
DTLYVLKIDLAEAQPRTIISGLVKFVTEEELNQRLVAVLCNLKPSKMRGI
LSEGMVLCTSNADHTVVEPIVLPATATAGSRLSFEGFSGTPDEQLNPKKK
VWEKLSADFKTNSDGLAVWKDNFLLTPEGEKLSSKLANCSIK*

LD21116.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-PA 525 CG4561-PA 1..525 18..542 2695 100 Plus
CG8235-PA 323 CG8235-PA 148..323 363..542 426 50.8 Plus

LD21116.pep Sequence

Translation from 52 to 1629

> LD21116.pep
MVGITPAEKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVA
YFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWSLLELRTKYYEQVI
KAMLSSIGVPLEKLKFVKGSDYQLSKEYTLDVYKLSSVVTQHDAKKAGAE
VVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFSEKYLPQ
LGYEKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKKAFCE
PGNIADNGLLSFVKHVLFSLFKEGEGFEVNREAEHGGDVTFLKYEDLEKY
YAEDKLHPGDLKATVEKYINRLLDPIRKAFENPELQKLSAAAYPPPAKVK
AGAAPAAGADEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRT
IISGLVKFVTEEELNQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHTVV
EPIVLPATATAGSRLSFEGFSGTPDEQLNPKKKVWEKLSADFKTNSDGLA
VWKDNFLLTPEGEKLSSKLANCSIK*

LD21116.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10209-PA 525 GF10209-PA 1..525 1..525 2579 96.2 Plus
Dana\GF12729-PA 292 GF12729-PA 134..292 366..525 423 52.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13450-PA 525 GG13450-PA 1..525 1..525 2714 97.7 Plus
Dere\GG10606-PA 320 GG10606-PA 51..320 282..525 432 39.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15893-PA 529 GH15893-PA 1..529 1..525 2443 89 Plus
Dgri\GH22683-PA 296 GH22683-PA 138..296 366..525 427 52.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
TyrRS-PA 525 CG4561-PA 1..525 1..525 2695 100 Plus
AIMP1-PA 323 CG8235-PA 148..323 346..525 426 50.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16545-PA 528 GI16545-PA 1..528 1..525 2468 89.6 Plus
Dmoj\GI20611-PA 291 GI20611-PA 133..291 366..525 427 52.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17993-PA 525 GL17993-PA 1..525 1..525 2545 94.7 Plus
Dper\GL10404-PA 295 GL10404-PA 137..295 366..525 441 52.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18259-PA 525 GA18259-PA 1..525 1..525 2548 94.9 Plus
Dpse\GA20918-PA 295 GA20918-PA 137..295 366..525 437 51.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24400-PA 498 GM24400-PA 1..498 1..525 2549 93.1 Plus
Dsec\GM20651-PA 320 GM20651-PA 149..320 350..525 435 50.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12469-PA 525 GD12469-PA 1..525 1..525 2738 98.5 Plus
Dsim\GD15265-PA 313 GD15265-PA 152..313 353..525 373 47.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Aats-tyr-PA 528 GJ12797-PA 1..528 1..525 2470 90 Plus
Dvir\GJ21051-PA 289 GJ21051-PA 131..289 366..525 414 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17487-PA 529 GK17487-PA 1..529 1..525 2439 89 Plus
Dwil\GK10745-PA 290 GK10745-PA 132..290 366..525 414 49.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22552-PA 525 GE22552-PA 1..525 1..525 2726 98.1 Plus
Dyak\GE22999-PA 525 GE22999-PA 1..525 1..525 2723 97.9 Plus
Dyak\GE22699-PA 111 GE22699-PA 1..111 414..525 233 43.4 Plus