Clone LD21120 Report

Search the DGRC for LD21120

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:20
Vector:pOT2
Associated Gene/TranscriptPrp18-RA
Protein status:LD21120.pep: gold
Preliminary Size:1300
Sequenced Size:1304

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6011 2001-01-01 Release 2 assignment
CG6011 2002-05-31 Blastp of sequenced clone
CG6011 2003-01-01 Sim4 clustering to Release 3
Prp18 2008-04-29 Release 5.5 accounting
Prp18 2008-08-15 Release 5.9 accounting
Prp18 2008-12-18 5.12 accounting

Clone Sequence Records

LD21120.complete Sequence

1304 bp (1304 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118327

> LD21120.complete
CTAAGGCATTTGTTTTGGTTACTCCACATTGTTATTAACTACAAATAACA
ATCACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGCGCAAGCTGCTG
GAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTCAGACGCGGTGA
CCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGTGGGCTACATAA
AGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAGGCGCGTACAGT
TTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAGGTCATTCGGAG
GCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGAGACGGAGCCCG
AGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGCCAGAGGCAAAT
CGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAGGTGGACGCCGC
CTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAAGGAAGACAAGA
AGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGGAGAGCATACAG
ACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGACATGGATGTGAT
CATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGACCAGATCGCCA
ACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAATGACCCGCGTC
ATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTTCGCAAGTTAAA
GCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCGAGACATCTGCA
AGCACCTGCTCAACCGCAACTATATCACAGCAAGCGATGCCTACCTAGAA
ATGGCCATCGGAAACGCGCCTTGGCCCATTGGTGTCACTATGGTGGGTAT
CCACGCTCGTACGGGTCGCGAAAAGATTTTCTCCAAAAACGTAGCCCACG
TAATGAACGATGAAACACAACGGAAGTACATCCAGGGTCTCAAACGACTG
ATGACCAAGTGCCAAGAGTACTTTCCCACCGATCCCTCCAAGTGCGTGGA
GTACGTCAGCAAGAAGGATCGGGAATAAACTTGAGCTTTATGTTAGTCAT
TATTGTAATAACAATATCAAGCGTTTAACTATATGTATGTGTAGAGAGCA
AGGGGATGTTCCGGGGGATTACATTTTCACTTCTTTCCCAGTTCAGCAGA
GCGCTGTGACGACTTTTCCACGGCGTTTATTAAAGTAGACCTGAAAGCAC
GAAAGAAAGCAATAAAAAAACAGTGTAATGTAAAAAAAAAAAAAAAAAAA
AAAA

LD21120.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-RA 1284 Prp18-RA 4..1284 1..1281 6405 100 Plus
P5cr-RA 1227 P5cr-RA 1040..1227 1244..1057 940 100 Minus
P5cr.a 1125 P5cr.a 950..1125 1244..1069 880 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14853951..14855231 1281..1 6330 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19029967..19031248 1282..1 6410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18770798..18772079 1282..1 6410 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:04:31 has no hits.

LD21120.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:05:15 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14853951..14855231 1..1281 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:26 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 56..1078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:16 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 56..1078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:24:21 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 56..1078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:52 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 56..1078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:19 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 56..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:25 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 4..1284 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:16 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 4..1284 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:24:21 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 4..1284 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:52 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 4..1284 1..1281 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:19 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 24..1304 1..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:15 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19029968..19031248 1..1281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:15 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19029968..19031248 1..1281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:15 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19029968..19031248 1..1281 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:24:21 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14855690..14856970 1..1281 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:16 Download gff for LD21120.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18770799..18772079 1..1281 100   Minus

LD21120.hyp Sequence

Translation from 55 to 1077

> LD21120.hyp
MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQ
ESVEAQGQTTEGAYSFVADGQNILPRTEVIRRLRERGEPILIFGETEPEA
FDRLRQCEISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS
DFAELDESVSWESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANY
SKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKH
LLNRNYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVM
NDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVSKKDRE*

LD21120.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-PA 340 CG6011-PA 1..340 1..340 1760 100 Plus

LD21120.pep Sequence

Translation from 55 to 1077

> LD21120.pep
MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQ
ESVEAQGQTTEGAYSFVADGQNILPRTEVIRRLRERGEPILIFGETEPEA
FDRLRQCEISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS
DFAELDESVSWESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANY
SKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKH
LLNRNYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVM
NDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVSKKDRE*

LD21120.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16419-PA 340 GF16419-PA 1..340 1..340 1760 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16208-PA 340 GG16208-PA 1..340 1..340 1795 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22411-PA 338 GH22411-PA 1..338 1..340 1681 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-PA 340 CG6011-PA 1..340 1..340 1760 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24151-PA 338 GI24151-PA 1..338 1..340 1696 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13914-PA 340 GL13914-PA 1..340 1..340 1752 95.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19293-PA 340 GA19293-PA 1..340 1..340 1752 95.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23352-PA 340 GM23352-PA 1..340 1..340 1823 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20137-PA 340 GD20137-PA 1..340 1..340 1821 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23455-PA 338 GJ23455-PA 1..338 1..340 1673 91.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13717-PA 340 GK13717-PA 1..340 1..340 1733 92.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25155-PA 340 GE25155-PA 1..340 1..340 1810 98.5 Plus