Clone LD21129 Report

Search the DGRC for LD21129

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:29
Vector:pOT2
Associated Gene/TranscriptNup93-1-RA
Protein status:LD21129.pep: gold
Preliminary Size:2779
Sequenced Size:2756

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11092 2000-02-14 Blastp of sequenced clone
CG11092 2001-01-01 Release 2 assignment
CG11092 2003-01-01 Sim4 clustering to Release 3
CG11092 2008-04-29 Release 5.5 accounting
CG11092 2008-08-15 Release 5.9 accounting
CG11092 2008-12-18 5.12 accounting

Clone Sequence Records

LD21129.complete Sequence

2756 bp (2756 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132159

> LD21129.complete
GAAATATCATTTTATTGGCACCGGCTTTTCCATCCCAATATCACGACATG
GATCTGATGGAACTGCTGAAGCAGGCCCAGCGCCTGACGAACGAGACCAA
TACGGACACGGAGGTGCCGGGCGTGGAACGGACCATGTCCCAGGTTCTGC
AGGCAACCAAGGAGTTTCACTCGCGTGTCACCCAAATGGGCACCAATGAT
CTGCAGGCCCACATACTGCTCGGCTCTAAGGGCGTGGACCTGCCCAAGCT
TACACAGAAGCTGGAGTCGCTCAGCGCCCGCCAAACCTTCGAGCCGATTG
ATCCGGTGACGGAGACCAATGTGCAGGCCTATCTGAAGAACGAGCGGGAG
AACGCCATACTCTCAGTTATCGATGAGACGAATCGCAGTATATTTAAATC
TGTGGAGCGACAGAAGTGGCGTTGCATCTACTCGGAGTGGGGCGAGGAGA
AGGAAGCGCTGCTAAACGCTCTGGTCGGACCAAACCAACAGGACTTCCCC
GACGTCCAGTTTCAGATAGTGCCCACGGCCATGGCTGATGAGCCCACTCC
GTACTCCCAACTGAATGGCCATGAGCAGATGTACGCTGAACAGATCGCCA
TCCACAACCAGTCGATCATCCTGGGCAGACGCCCTAACTTGCTGTCGACC
CTTGCCCACGTGGTCCAAGACTCCTTCAACGATGAGTCCGTAGCCGAGAT
GTGGAATGTATTGCAGTTTATGACCGCGTTGCCGCCAGTCTCGAGCACCA
TCGATCCAATCAAGAATCGTCAGACATCACCGCAATTCGTTGAGCAGGCC
CGCACGTACTTGGAGCGCAGATATAGGACGTATATGAGAAAGTTTATCGT
CGCGAATTTGGCCAAAGCGCGGCGGGGAGGAATCCCCAGCGTGTACCATA
TGGTCCGCTCCTATGTGGGCGTTACTCTCCAGGGGCAGCGAGCCCTCTAC
GGGCTGCATGACGTGAACAATGGCCAGCCATTGTGGCCACATGTTTACTA
TAGCTTGCGGAGTGGCGATATGGACGCGGCTGCGTTGTATCTCAAGGAAT
CGGGAACCTGCCCCGACCTGCTTACGCTATTGACGTTGCGAAAGAACGGC
GATAGGGACAACTTGATGGTAAAGCTTGAGGGTCAGCTAAAGTTGGAGTA
CAACAGTAGACTGCGCGCCTGTACGGATCCCTACAAAAAGGCGGTATACG
TCGTATTGTTGGCGTGTGATCCGCACTTCACTCACGTAGAACTAATGCGC
AGCATCGACGACTTCCTGTGGATGCAACTGTCCATTCTGCGCAGGTCGGA
CCAAAGCGACAGCAACACGGAGCAGCTAACGTTCAGCGGCCTGCAATCGC
TCATTTTAGAAAAGTACGGCGAGAACTACTTCAATGCGCGCGAGAAGGCG
GCGCTATACTTCCAGGTGCTGACGCTTACCGGCCAATTTGAGGCCGCCAT
TGAATTCCTCGCCCGCACCGAGAAAAATCGAACGCACGCTATCCACATGG
CCATTGCCCTAAACGAGATATCCATGCTGGGAACACCACGTTCCGTGGAA
CAATCCCTTCTGAGCTCCGACCCTGACGACCCAAAACCAATGAAACGACT
CAATCTTGTGCGTCTGATCGTCATGTACACCAAGTGCTTTGAGAGAACGG
ACACCACGCAGGCGCTGCATTACTATTACCTGTTGCGCAACTTTAAATCC
GAGAACGGACGCGGCAACGTGATGCTCACCTGCGTCTGCGATCTGCTAGT
TGAGAAATGCGACGACGAAATGCTAGAGCTGATTTTCGGGACGGAGGATA
AGAAAAACGGCTTGCGCTATGGCGGCATATATGCGGAATTTCAAATTCAT
GAATGCGATAAGTACTCTCTGGCCGAAATGGTGGGCGATGAGTTGTCGAA
ACGCGGCGACTACGAATTGGCCATCGAGCTCTACTTTATTGGTGGCCAGC
TGGACAAGGCACTGCGTTTGGTGAACTCGCTACTGGCACAGGTGGTCCAC
CAACCAACGCAGAATGGAAGCGTGCGTAACCGGCTGGGCGATATTATCAA
TCGACTAGATGCGGCGCTGGTCGTGCGTAAATCGGACGTAGAGGTTCAAG
TTGTTGTCACATATACGGTGCTGACAAAGGTCATGAAGTTCTTTGACCAC
TATCACGAAGGCGCATTGCGTTCGGCATTAGAAATCCTGACCAACAATCA
TCTGATACCCGCCAGCTCATTGGAAGTGGACGAGTGTGTGACGAACATAA
AGCGGATGGGTCCCGAGGTCATTAAAGTGCTGCCCGATATCCTGCTGGCG
TCCATGGACATTGTATACCAGGAGTATGTGAAGCTAATGGACTCGAATGA
AACAGCTTCCGGTTTCTTTGATGAAAGCAAGTGCGTCAATAAGGAGCCCG
CCGTGAAACATTTGCGAGACAGGGCCAAGGCATTCACCAACATGGCTGCC
AGCGTTCCATACCGAATGCCATCGACCACCAACCAGCGGCTCGTCCAGCT
GGAGATCCTTATGCACTAACATTAGCCAGATTAATACCTAGTTATCGTTT
ATATGCATTTCATTCAGTTCGTTTAAAATTTTATTGATGATTATATTTTT
TTCTTTCCAATAATTTTATTGGAATTTTTCTGTTAAGCGCAACGCATTTA
AAGCATTAAGCATTCGAAAAATTTAAAAGAAAATATTTTGTATGTATGTG
TTATAAGAAAACTAAACAAAATTCAAAATGTCAAAAAAAAAAAAAAAAAA
AAAAAA

LD21129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11092-RA 2978 CG11092-RA 130..2862 1..2733 13665 100 Plus
CG7262-RA 2559 CG7262-RA 209..364 141..296 375 82.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13715713..13716623 1822..2732 4540 99.9 Plus
chrX 22417052 chrX 13714124..13714929 390..1195 4030 100 Plus
chrX 22417052 chrX 13715000..13715629 1193..1822 3150 100 Plus
chrX 22417052 chrX 13713593..13713800 1..208 1040 100 Plus
chrX 22417052 chrX 13713864..13714044 209..389 905 100 Plus
chr3R 27901430 chr3R 10722542..10722714 382..210 310 78.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13825000..13825911 1822..2733 4560 100 Plus
X 23542271 X 13823411..13824216 390..1195 4030 100 Plus
X 23542271 X 13824287..13824916 1193..1822 3150 100 Plus
X 23542271 X 13822880..13823087 1..208 1040 100 Plus
X 23542271 X 13823151..13823331 209..389 905 100 Plus
3R 32079331 3R 14897895..14898067 382..210 310 78.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13833098..13834009 1822..2733 4560 100 Plus
X 23527363 X 13831509..13832314 390..1195 4030 100 Plus
X 23527363 X 13832385..13833014 1193..1822 3150 100 Plus
X 23527363 X 13830978..13831185 1..208 1040 100 Plus
X 23527363 X 13831249..13831429 209..389 905 100 Plus
3R 31820162 3R 14638812..14638898 296..210 285 88.5 Minus
Blast to na_te.dros performed on 2019-03-16 18:42:00 has no hits.

LD21129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:42:43 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13713593..13713800 1..208 100 -> Plus
chrX 13715714..13716623 1823..2732 99   Plus
chrX 13713864..13714044 209..389 100 -> Plus
chrX 13714124..13714927 390..1193 100 -> Plus
chrX 13715001..13715629 1194..1822 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:27 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 1..2472 48..2519 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:01 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 1..2472 48..2519 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:16 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-1-RA 1..2472 48..2519 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:10:46 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 1..2472 48..2519 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:20 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-1-RA 1..2472 48..2519 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:45 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 78..2809 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:01 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 78..2809 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:16 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-1-RA 78..2809 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:10:46 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11092-RA 78..2809 1..2732 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:20 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
Nup93-1-RA 55..2786 1..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:43 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
X 13822880..13823087 1..208 100 -> Plus
X 13823151..13823331 209..389 100 -> Plus
X 13823411..13824214 390..1193 100 -> Plus
X 13824288..13824916 1194..1822 100 -> Plus
X 13825001..13825910 1823..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:43 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
X 13822880..13823087 1..208 100 -> Plus
X 13823151..13823331 209..389 100 -> Plus
X 13823411..13824214 390..1193 100 -> Plus
X 13824288..13824916 1194..1822 100 -> Plus
X 13825001..13825910 1823..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:43 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
X 13822880..13823087 1..208 100 -> Plus
X 13823151..13823331 209..389 100 -> Plus
X 13823411..13824214 390..1193 100 -> Plus
X 13824288..13824916 1194..1822 100 -> Plus
X 13825001..13825910 1823..2732 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:16 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13716913..13717120 1..208 100 -> Plus
arm_X 13717184..13717364 209..389 100 -> Plus
arm_X 13717444..13718247 390..1193 100 -> Plus
arm_X 13718321..13718949 1194..1822 100 -> Plus
arm_X 13719034..13719943 1823..2732 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:15 Download gff for LD21129.complete
Subject Subject Range Query Range Percent Splice Strand
X 13830978..13831185 1..208 100 -> Plus
X 13831249..13831429 209..389 100 -> Plus
X 13831509..13832312 390..1193 100 -> Plus
X 13832386..13833014 1194..1822 100 -> Plus
X 13833099..13834008 1823..2732 100   Plus

LD21129.hyp Sequence

Translation from 2 to 2518

> LD21129.hyp
NIILLAPAFPSQYHDMDLMELLKQAQRLTNETNTDTEVPGVERTMSQVLQ
ATKEFHSRVTQMGTNDLQAHILLGSKGVDLPKLTQKLESLSARQTFEPID
PVTETNVQAYLKNERENAILSVIDETNRSIFKSVERQKWRCIYSEWGEEK
EALLNALVGPNQQDFPDVQFQIVPTAMADEPTPYSQLNGHEQMYAEQIAI
HNQSIILGRRPNLLSTLAHVVQDSFNDESVAEMWNVLQFMTALPPVSSTI
DPIKNRQTSPQFVEQARTYLERRYRTYMRKFIVANLAKARRGGIPSVYHM
VRSYVGVTLQGQRALYGLHDVNNGQPLWPHVYYSLRSGDMDAAALYLKES
GTCPDLLTLLTLRKNGDRDNLMVKLEGQLKLEYNSRLRACTDPYKKAVYV
VLLACDPHFTHVELMRSIDDFLWMQLSILRRSDQSDSNTEQLTFSGLQSL
ILEKYGENYFNAREKAALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMA
IALNEISMLGTPRSVEQSLLSSDPDDPKPMKRLNLVRLIVMYTKCFERTD
TTQALHYYYLLRNFKSENGRGNVMLTCVCDLLVEKCDDEMLELIFGTEDK
KNGLRYGGIYAEFQIHECDKYSLAEMVGDELSKRGDYELAIELYFIGGQL
DKALRLVNSLLAQVVHQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQV
VVTYTVLTKVMKFFDHYHEGALRSALEILTNNHLIPASSLEVDECVTNIK
RMGPEVIKVLPDILLASMDIVYQEYVKLMDSNETASGFFDESKCVNKEPA
VKHLRDRAKAFTNMAASVPYRMPSTTNQRLVQLEILMH*

LD21129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nup93-1-PA 823 CG11092-PA 1..823 16..838 4228 100 Plus
Nup93-2-PA 796 CG7262-PA 1..796 16..838 1725 44.5 Plus

LD21129.pep Sequence

Translation from 47 to 2518

> LD21129.pep
MDLMELLKQAQRLTNETNTDTEVPGVERTMSQVLQATKEFHSRVTQMGTN
DLQAHILLGSKGVDLPKLTQKLESLSARQTFEPIDPVTETNVQAYLKNER
ENAILSVIDETNRSIFKSVERQKWRCIYSEWGEEKEALLNALVGPNQQDF
PDVQFQIVPTAMADEPTPYSQLNGHEQMYAEQIAIHNQSIILGRRPNLLS
TLAHVVQDSFNDESVAEMWNVLQFMTALPPVSSTIDPIKNRQTSPQFVEQ
ARTYLERRYRTYMRKFIVANLAKARRGGIPSVYHMVRSYVGVTLQGQRAL
YGLHDVNNGQPLWPHVYYSLRSGDMDAAALYLKESGTCPDLLTLLTLRKN
GDRDNLMVKLEGQLKLEYNSRLRACTDPYKKAVYVVLLACDPHFTHVELM
RSIDDFLWMQLSILRRSDQSDSNTEQLTFSGLQSLILEKYGENYFNAREK
AALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMAIALNEISMLGTPRSV
EQSLLSSDPDDPKPMKRLNLVRLIVMYTKCFERTDTTQALHYYYLLRNFK
SENGRGNVMLTCVCDLLVEKCDDEMLELIFGTEDKKNGLRYGGIYAEFQI
HECDKYSLAEMVGDELSKRGDYELAIELYFIGGQLDKALRLVNSLLAQVV
HQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQVVVTYTVLTKVMKFFD
HYHEGALRSALEILTNNHLIPASSLEVDECVTNIKRMGPEVIKVLPDILL
ASMDIVYQEYVKLMDSNETASGFFDESKCVNKEPAVKHLRDRAKAFTNMA
ASVPYRMPSTTNQRLVQLEILMH*

LD21129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19214-PA 824 GF19214-PA 1..824 1..823 2861 64.5 Plus
Dana\GF23143-PA 796 GF23143-PA 1..796 1..823 1731 44.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17817-PA 824 GG17817-PA 1..824 1..823 3492 79 Plus
Dere\GG21001-PA 796 GG21001-PA 1..796 1..823 1852 45.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17674-PA 845 GH17674-PA 1..845 1..823 2483 56.8 Plus
Dgri\GH18990-PA 797 GH18990-PA 1..797 1..823 1721 45.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Nup93-1-PA 823 CG11092-PA 1..823 1..823 4228 100 Plus
Nup93-2-PA 796 CG7262-PA 1..796 1..823 1725 44.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21492-PA 842 GI21492-PA 3..842 1..823 2538 57.8 Plus
Dmoj\GI24492-PA 799 GI24492-PA 1..799 1..823 1674 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14821-PA 828 GL14821-PA 1..828 1..823 2626 60.5 Plus
Dper\GL12381-PA 798 GL12381-PA 1..798 1..823 1697 44.5 Plus
Dper\GL12243-PA 635 GL12243-PA 1..563 1..581 1273 46.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10753-PA 828 GA10753-PA 1..828 1..823 2608 60.6 Plus
Dpse\GA20219-PA 798 GA20219-PA 1..798 1..823 1720 44.9 Plus
Dpse\GA27489-PA 798 GA27489-PA 1..798 1..823 1717 44.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17645-PA 822 GM17645-PA 1..822 1..823 3978 89.4 Plus
Dsec\GM25817-PA 794 GM25817-PA 1..794 1..823 1794 45.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20393-PA 796 GD20393-PA 1..796 1..823 1804 45.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19033-PA 838 GJ19033-PA 1..838 1..823 2682 60.9 Plus
Dvir\GJ24557-PA 798 GJ24557-PA 1..798 1..823 1799 45.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24989-PA 832 GK24989-PA 1..832 1..823 2836 63.8 Plus
Dwil\GK22778-PA 804 GK22778-PA 1..804 1..823 1824 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17112-PA 824 GE17112-PA 1..824 1..823 3455 77.7 Plus
Dyak\GE26422-PA 796 GE26422-PA 1..796 1..823 1833 45.4 Plus