BDGP Sequence Production Resources |
Search the DGRC for LD21129
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 211 |
Well: | 29 |
Vector: | pOT2 |
Associated Gene/Transcript | Nup93-1-RA |
Protein status: | LD21129.pep: gold |
Preliminary Size: | 2779 |
Sequenced Size: | 2756 |
Gene | Date | Evidence |
---|---|---|
CG11092 | 2000-02-14 | Blastp of sequenced clone |
CG11092 | 2001-01-01 | Release 2 assignment |
CG11092 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11092 | 2008-04-29 | Release 5.5 accounting |
CG11092 | 2008-08-15 | Release 5.9 accounting |
CG11092 | 2008-12-18 | 5.12 accounting |
2756 bp (2756 high quality bases) assembled on 2000-02-14
GenBank Submission: AF132159
> LD21129.complete GAAATATCATTTTATTGGCACCGGCTTTTCCATCCCAATATCACGACATG GATCTGATGGAACTGCTGAAGCAGGCCCAGCGCCTGACGAACGAGACCAA TACGGACACGGAGGTGCCGGGCGTGGAACGGACCATGTCCCAGGTTCTGC AGGCAACCAAGGAGTTTCACTCGCGTGTCACCCAAATGGGCACCAATGAT CTGCAGGCCCACATACTGCTCGGCTCTAAGGGCGTGGACCTGCCCAAGCT TACACAGAAGCTGGAGTCGCTCAGCGCCCGCCAAACCTTCGAGCCGATTG ATCCGGTGACGGAGACCAATGTGCAGGCCTATCTGAAGAACGAGCGGGAG AACGCCATACTCTCAGTTATCGATGAGACGAATCGCAGTATATTTAAATC TGTGGAGCGACAGAAGTGGCGTTGCATCTACTCGGAGTGGGGCGAGGAGA AGGAAGCGCTGCTAAACGCTCTGGTCGGACCAAACCAACAGGACTTCCCC GACGTCCAGTTTCAGATAGTGCCCACGGCCATGGCTGATGAGCCCACTCC GTACTCCCAACTGAATGGCCATGAGCAGATGTACGCTGAACAGATCGCCA TCCACAACCAGTCGATCATCCTGGGCAGACGCCCTAACTTGCTGTCGACC CTTGCCCACGTGGTCCAAGACTCCTTCAACGATGAGTCCGTAGCCGAGAT GTGGAATGTATTGCAGTTTATGACCGCGTTGCCGCCAGTCTCGAGCACCA TCGATCCAATCAAGAATCGTCAGACATCACCGCAATTCGTTGAGCAGGCC CGCACGTACTTGGAGCGCAGATATAGGACGTATATGAGAAAGTTTATCGT CGCGAATTTGGCCAAAGCGCGGCGGGGAGGAATCCCCAGCGTGTACCATA TGGTCCGCTCCTATGTGGGCGTTACTCTCCAGGGGCAGCGAGCCCTCTAC GGGCTGCATGACGTGAACAATGGCCAGCCATTGTGGCCACATGTTTACTA TAGCTTGCGGAGTGGCGATATGGACGCGGCTGCGTTGTATCTCAAGGAAT CGGGAACCTGCCCCGACCTGCTTACGCTATTGACGTTGCGAAAGAACGGC GATAGGGACAACTTGATGGTAAAGCTTGAGGGTCAGCTAAAGTTGGAGTA CAACAGTAGACTGCGCGCCTGTACGGATCCCTACAAAAAGGCGGTATACG TCGTATTGTTGGCGTGTGATCCGCACTTCACTCACGTAGAACTAATGCGC AGCATCGACGACTTCCTGTGGATGCAACTGTCCATTCTGCGCAGGTCGGA CCAAAGCGACAGCAACACGGAGCAGCTAACGTTCAGCGGCCTGCAATCGC TCATTTTAGAAAAGTACGGCGAGAACTACTTCAATGCGCGCGAGAAGGCG GCGCTATACTTCCAGGTGCTGACGCTTACCGGCCAATTTGAGGCCGCCAT TGAATTCCTCGCCCGCACCGAGAAAAATCGAACGCACGCTATCCACATGG CCATTGCCCTAAACGAGATATCCATGCTGGGAACACCACGTTCCGTGGAA CAATCCCTTCTGAGCTCCGACCCTGACGACCCAAAACCAATGAAACGACT CAATCTTGTGCGTCTGATCGTCATGTACACCAAGTGCTTTGAGAGAACGG ACACCACGCAGGCGCTGCATTACTATTACCTGTTGCGCAACTTTAAATCC GAGAACGGACGCGGCAACGTGATGCTCACCTGCGTCTGCGATCTGCTAGT TGAGAAATGCGACGACGAAATGCTAGAGCTGATTTTCGGGACGGAGGATA AGAAAAACGGCTTGCGCTATGGCGGCATATATGCGGAATTTCAAATTCAT GAATGCGATAAGTACTCTCTGGCCGAAATGGTGGGCGATGAGTTGTCGAA ACGCGGCGACTACGAATTGGCCATCGAGCTCTACTTTATTGGTGGCCAGC TGGACAAGGCACTGCGTTTGGTGAACTCGCTACTGGCACAGGTGGTCCAC CAACCAACGCAGAATGGAAGCGTGCGTAACCGGCTGGGCGATATTATCAA TCGACTAGATGCGGCGCTGGTCGTGCGTAAATCGGACGTAGAGGTTCAAG TTGTTGTCACATATACGGTGCTGACAAAGGTCATGAAGTTCTTTGACCAC TATCACGAAGGCGCATTGCGTTCGGCATTAGAAATCCTGACCAACAATCA TCTGATACCCGCCAGCTCATTGGAAGTGGACGAGTGTGTGACGAACATAA AGCGGATGGGTCCCGAGGTCATTAAAGTGCTGCCCGATATCCTGCTGGCG TCCATGGACATTGTATACCAGGAGTATGTGAAGCTAATGGACTCGAATGA AACAGCTTCCGGTTTCTTTGATGAAAGCAAGTGCGTCAATAAGGAGCCCG CCGTGAAACATTTGCGAGACAGGGCCAAGGCATTCACCAACATGGCTGCC AGCGTTCCATACCGAATGCCATCGACCACCAACCAGCGGCTCGTCCAGCT GGAGATCCTTATGCACTAACATTAGCCAGATTAATACCTAGTTATCGTTT ATATGCATTTCATTCAGTTCGTTTAAAATTTTATTGATGATTATATTTTT TTCTTTCCAATAATTTTATTGGAATTTTTCTGTTAAGCGCAACGCATTTA AAGCATTAAGCATTCGAAAAATTTAAAAGAAAATATTTTGTATGTATGTG TTATAAGAAAACTAAACAAAATTCAAAATGTCAAAAAAAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13715713..13716623 | 1822..2732 | 4540 | 99.9 | Plus |
chrX | 22417052 | chrX | 13714124..13714929 | 390..1195 | 4030 | 100 | Plus |
chrX | 22417052 | chrX | 13715000..13715629 | 1193..1822 | 3150 | 100 | Plus |
chrX | 22417052 | chrX | 13713593..13713800 | 1..208 | 1040 | 100 | Plus |
chrX | 22417052 | chrX | 13713864..13714044 | 209..389 | 905 | 100 | Plus |
chr3R | 27901430 | chr3R | 10722542..10722714 | 382..210 | 310 | 78.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13825000..13825911 | 1822..2733 | 4560 | 100 | Plus |
X | 23542271 | X | 13823411..13824216 | 390..1195 | 4030 | 100 | Plus |
X | 23542271 | X | 13824287..13824916 | 1193..1822 | 3150 | 100 | Plus |
X | 23542271 | X | 13822880..13823087 | 1..208 | 1040 | 100 | Plus |
X | 23542271 | X | 13823151..13823331 | 209..389 | 905 | 100 | Plus |
3R | 32079331 | 3R | 14897895..14898067 | 382..210 | 310 | 78.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13833098..13834009 | 1822..2733 | 4560 | 100 | Plus |
X | 23527363 | X | 13831509..13832314 | 390..1195 | 4030 | 100 | Plus |
X | 23527363 | X | 13832385..13833014 | 1193..1822 | 3150 | 100 | Plus |
X | 23527363 | X | 13830978..13831185 | 1..208 | 1040 | 100 | Plus |
X | 23527363 | X | 13831249..13831429 | 209..389 | 905 | 100 | Plus |
3R | 31820162 | 3R | 14638812..14638898 | 296..210 | 285 | 88.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13713593..13713800 | 1..208 | 100 | -> | Plus |
chrX | 13715714..13716623 | 1823..2732 | 99 | Plus | |
chrX | 13713864..13714044 | 209..389 | 100 | -> | Plus |
chrX | 13714124..13714927 | 390..1193 | 100 | -> | Plus |
chrX | 13715001..13715629 | 1194..1822 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 1..2472 | 48..2519 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 1..2472 | 48..2519 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-1-RA | 1..2472 | 48..2519 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 1..2472 | 48..2519 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-1-RA | 1..2472 | 48..2519 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 78..2809 | 1..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 78..2809 | 1..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-1-RA | 78..2809 | 1..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11092-RA | 78..2809 | 1..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup93-1-RA | 55..2786 | 1..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13822880..13823087 | 1..208 | 100 | -> | Plus |
X | 13823151..13823331 | 209..389 | 100 | -> | Plus |
X | 13823411..13824214 | 390..1193 | 100 | -> | Plus |
X | 13824288..13824916 | 1194..1822 | 100 | -> | Plus |
X | 13825001..13825910 | 1823..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13822880..13823087 | 1..208 | 100 | -> | Plus |
X | 13823151..13823331 | 209..389 | 100 | -> | Plus |
X | 13823411..13824214 | 390..1193 | 100 | -> | Plus |
X | 13824288..13824916 | 1194..1822 | 100 | -> | Plus |
X | 13825001..13825910 | 1823..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13822880..13823087 | 1..208 | 100 | -> | Plus |
X | 13823151..13823331 | 209..389 | 100 | -> | Plus |
X | 13823411..13824214 | 390..1193 | 100 | -> | Plus |
X | 13824288..13824916 | 1194..1822 | 100 | -> | Plus |
X | 13825001..13825910 | 1823..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13716913..13717120 | 1..208 | 100 | -> | Plus |
arm_X | 13717184..13717364 | 209..389 | 100 | -> | Plus |
arm_X | 13717444..13718247 | 390..1193 | 100 | -> | Plus |
arm_X | 13718321..13718949 | 1194..1822 | 100 | -> | Plus |
arm_X | 13719034..13719943 | 1823..2732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13830978..13831185 | 1..208 | 100 | -> | Plus |
X | 13831249..13831429 | 209..389 | 100 | -> | Plus |
X | 13831509..13832312 | 390..1193 | 100 | -> | Plus |
X | 13832386..13833014 | 1194..1822 | 100 | -> | Plus |
X | 13833099..13834008 | 1823..2732 | 100 | Plus |
Translation from 2 to 2518
> LD21129.hyp NIILLAPAFPSQYHDMDLMELLKQAQRLTNETNTDTEVPGVERTMSQVLQ ATKEFHSRVTQMGTNDLQAHILLGSKGVDLPKLTQKLESLSARQTFEPID PVTETNVQAYLKNERENAILSVIDETNRSIFKSVERQKWRCIYSEWGEEK EALLNALVGPNQQDFPDVQFQIVPTAMADEPTPYSQLNGHEQMYAEQIAI HNQSIILGRRPNLLSTLAHVVQDSFNDESVAEMWNVLQFMTALPPVSSTI DPIKNRQTSPQFVEQARTYLERRYRTYMRKFIVANLAKARRGGIPSVYHM VRSYVGVTLQGQRALYGLHDVNNGQPLWPHVYYSLRSGDMDAAALYLKES GTCPDLLTLLTLRKNGDRDNLMVKLEGQLKLEYNSRLRACTDPYKKAVYV VLLACDPHFTHVELMRSIDDFLWMQLSILRRSDQSDSNTEQLTFSGLQSL ILEKYGENYFNAREKAALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMA IALNEISMLGTPRSVEQSLLSSDPDDPKPMKRLNLVRLIVMYTKCFERTD TTQALHYYYLLRNFKSENGRGNVMLTCVCDLLVEKCDDEMLELIFGTEDK KNGLRYGGIYAEFQIHECDKYSLAEMVGDELSKRGDYELAIELYFIGGQL DKALRLVNSLLAQVVHQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQV VVTYTVLTKVMKFFDHYHEGALRSALEILTNNHLIPASSLEVDECVTNIK RMGPEVIKVLPDILLASMDIVYQEYVKLMDSNETASGFFDESKCVNKEPA VKHLRDRAKAFTNMAASVPYRMPSTTNQRLVQLEILMH*
Translation from 47 to 2518
> LD21129.pep MDLMELLKQAQRLTNETNTDTEVPGVERTMSQVLQATKEFHSRVTQMGTN DLQAHILLGSKGVDLPKLTQKLESLSARQTFEPIDPVTETNVQAYLKNER ENAILSVIDETNRSIFKSVERQKWRCIYSEWGEEKEALLNALVGPNQQDF PDVQFQIVPTAMADEPTPYSQLNGHEQMYAEQIAIHNQSIILGRRPNLLS TLAHVVQDSFNDESVAEMWNVLQFMTALPPVSSTIDPIKNRQTSPQFVEQ ARTYLERRYRTYMRKFIVANLAKARRGGIPSVYHMVRSYVGVTLQGQRAL YGLHDVNNGQPLWPHVYYSLRSGDMDAAALYLKESGTCPDLLTLLTLRKN GDRDNLMVKLEGQLKLEYNSRLRACTDPYKKAVYVVLLACDPHFTHVELM RSIDDFLWMQLSILRRSDQSDSNTEQLTFSGLQSLILEKYGENYFNAREK AALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMAIALNEISMLGTPRSV EQSLLSSDPDDPKPMKRLNLVRLIVMYTKCFERTDTTQALHYYYLLRNFK SENGRGNVMLTCVCDLLVEKCDDEMLELIFGTEDKKNGLRYGGIYAEFQI HECDKYSLAEMVGDELSKRGDYELAIELYFIGGQLDKALRLVNSLLAQVV HQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQVVVTYTVLTKVMKFFD HYHEGALRSALEILTNNHLIPASSLEVDECVTNIKRMGPEVIKVLPDILL ASMDIVYQEYVKLMDSNETASGFFDESKCVNKEPAVKHLRDRAKAFTNMA ASVPYRMPSTTNQRLVQLEILMH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19214-PA | 824 | GF19214-PA | 1..824 | 1..823 | 2861 | 64.5 | Plus |
Dana\GF23143-PA | 796 | GF23143-PA | 1..796 | 1..823 | 1731 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17817-PA | 824 | GG17817-PA | 1..824 | 1..823 | 3492 | 79 | Plus |
Dere\GG21001-PA | 796 | GG21001-PA | 1..796 | 1..823 | 1852 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17674-PA | 845 | GH17674-PA | 1..845 | 1..823 | 2483 | 56.8 | Plus |
Dgri\GH18990-PA | 797 | GH18990-PA | 1..797 | 1..823 | 1721 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup93-1-PA | 823 | CG11092-PA | 1..823 | 1..823 | 4228 | 100 | Plus |
Nup93-2-PA | 796 | CG7262-PA | 1..796 | 1..823 | 1725 | 44.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21492-PA | 842 | GI21492-PA | 3..842 | 1..823 | 2538 | 57.8 | Plus |
Dmoj\GI24492-PA | 799 | GI24492-PA | 1..799 | 1..823 | 1674 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14821-PA | 828 | GL14821-PA | 1..828 | 1..823 | 2626 | 60.5 | Plus |
Dper\GL12381-PA | 798 | GL12381-PA | 1..798 | 1..823 | 1697 | 44.5 | Plus |
Dper\GL12243-PA | 635 | GL12243-PA | 1..563 | 1..581 | 1273 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10753-PA | 828 | GA10753-PA | 1..828 | 1..823 | 2608 | 60.6 | Plus |
Dpse\GA20219-PA | 798 | GA20219-PA | 1..798 | 1..823 | 1720 | 44.9 | Plus |
Dpse\GA27489-PA | 798 | GA27489-PA | 1..798 | 1..823 | 1717 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17645-PA | 822 | GM17645-PA | 1..822 | 1..823 | 3978 | 89.4 | Plus |
Dsec\GM25817-PA | 794 | GM25817-PA | 1..794 | 1..823 | 1794 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20393-PA | 796 | GD20393-PA | 1..796 | 1..823 | 1804 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19033-PA | 838 | GJ19033-PA | 1..838 | 1..823 | 2682 | 60.9 | Plus |
Dvir\GJ24557-PA | 798 | GJ24557-PA | 1..798 | 1..823 | 1799 | 45.4 | Plus |