Clone LD21131 Report

Search the DGRC for LD21131

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:31
Vector:pOT2
Associated Gene/TranscriptGstS1-RA
Protein status:LD21131.pep: gold
Preliminary Size:1300
Sequenced Size:1394

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8938 2001-01-01 Release 2 assignment
CG8938 2002-05-31 Blastp of sequenced clone
GstS1 2008-04-29 Release 5.5 accounting
GstS1 2008-08-15 Release 5.9 accounting
GstS1 2008-12-18 5.12 accounting

Clone Sequence Records

LD21131.complete Sequence

1394 bp (1394 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118328

> LD21131.complete
TCGTGACGATCGGTTCAGTGATAGCTTCCCAGTGGCTGGAGAGAGTGAGA
GTAGAGAGTAACGGAAAGAGAGTGCGAATCGAACCGAACGCTATTCCTTC
GCCCACGATTTAAGTGAACGCTTATTAGCGAATTGAAGACCCGAGAGCCC
CAGTGCCCAGCTGATTTCGTATTCTTTGTTGAGGGAATTGCATTGAGAAA
GCGCAGAGATGGCCGATGAAGCACAAGCACCACCAGCTGAGGGAGCACCA
CCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAGGGTGCCGT
CGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCCCATCAAGC
ACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCGAGCCCCTG
CGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTGCGCGTCAC
CCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGGACAGATGC
CCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTTCGATGGCT
CGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCGTGGGAGGA
TCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCGTCTAAAAA
TTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGAAGAAGTTG
GTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAGCTCGAGCA
GACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCTGACCTGGG
CCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACATGGTCAAG
CGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTGGATGCCGT
CAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCCCGTCACCG
AGGTCTAAGTTCACCGAACAGGACTTGGGAGGATGGGAAAGCATTGCACA
ACCACTCAGACACAACCGCACCGCAGAAATGCACACCACCCACATCTGCA
CACATTTTGTTCCTTTTTGCGGAGGATCCGAGAGGACGGCGGATTTTCGC
ACGGGGTCATAAACGCGTAGGAGTTTAGCACGTATCACTATGGATAAATC
GTATTTGTTCTTAATTTCTTGGTTATAATTCTCTTTGCATGGCGCTATAT
ACATATTTCTATTGGGGTCCGGCAGCGGATCGCCGTTCGTTAGCTTCTTC
TGAAATGATGAAAGATAATACTTATTGCACAGTTTATAATATTTTGGCTT
ACTTTTAGAACATACATTTAGCGCACCTATGCAGACATTTGCTGTACCTA
TATATATATATATATGCATAAAATACAAAAAAAAAAAAAAAAAA

LD21131.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-RB 1919 GstS1-RB 148..1527 1..1380 6900 100 Plus
GstS1.b 2111 GstS1.b 340..1719 1..1380 6900 100 Plus
GstS1-RC 1877 GstS1-RC 148..1527 1..1380 6900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12980850..12981437 1376..789 2940 100 Minus
chr2R 21145070 chr2R 12981972..12982269 479..182 1490 100 Minus
chr2R 21145070 chr2R 12984434..12984617 184..1 905 99.5 Minus
chr2R 21145070 chr2R 12981736..12981903 647..480 840 100 Minus
chr2R 21145070 chr2R 12981523..12981665 790..648 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17093639..17094230 1380..789 2960 100 Minus
2R 25286936 2R 17094765..17095062 479..182 1490 100 Minus
2R 25286936 2R 17097227..17097410 184..1 920 100 Minus
2R 25286936 2R 17094529..17094696 647..480 840 100 Minus
2R 25286936 2R 17094316..17094458 790..648 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17094838..17095429 1380..789 2960 100 Minus
2R 25260384 2R 17095964..17096261 479..182 1490 100 Minus
2R 25260384 2R 17098426..17098609 184..1 920 100 Minus
2R 25260384 2R 17095728..17095895 647..480 840 100 Minus
2R 25260384 2R 17095515..17095657 790..648 715 100 Minus
Blast to na_te.dros performed 2019-03-16 07:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6906..7033 1365..1244 111 58.6 Minus

LD21131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:44:13 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12981972..12982267 184..479 100 <- Minus
chr2R 12980850..12981435 791..1376 100 <- Minus
chr2R 12981523..12981665 648..790 100 <- Minus
chr2R 12981736..12981903 480..647 100 <- Minus
chr2R 12984435..12984617 1..183 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:28 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 1..750 209..958 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:17 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 1..750 209..958 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:02:16 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 1..750 209..958 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:53 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 1..750 209..958 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:26 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 1..750 209..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:26 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 21..1396 1..1376 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:17 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 21..1396 1..1376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:02:16 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RB 27..1402 1..1376 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:53 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 21..1396 1..1376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:26 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RB 27..1402 1..1376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:13 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17093643..17094228 791..1376 100 <- Minus
2R 17094316..17094458 648..790 100 <- Minus
2R 17094529..17094696 480..647 100 <- Minus
2R 17094765..17095060 184..479 100 <- Minus
2R 17097228..17097410 1..183 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:13 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17093643..17094228 791..1376 100 <- Minus
2R 17094316..17094458 648..790 100 <- Minus
2R 17094529..17094696 480..647 100 <- Minus
2R 17094765..17095060 184..479 100 <- Minus
2R 17097228..17097410 1..183 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:13 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17093643..17094228 791..1376 100 <- Minus
2R 17094316..17094458 648..790 100 <- Minus
2R 17094529..17094696 480..647 100 <- Minus
2R 17094765..17095060 184..479 100 <- Minus
2R 17097228..17097410 1..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:02:16 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12981148..12981733 791..1376 100 <- Minus
arm_2R 12981821..12981963 648..790 100 <- Minus
arm_2R 12982034..12982201 480..647 100 <- Minus
arm_2R 12982270..12982565 184..479 100 <- Minus
arm_2R 12984733..12984915 1..183 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:18 Download gff for LD21131.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17094842..17095427 791..1376 100 <- Minus
2R 17095515..17095657 648..790 100 <- Minus
2R 17095728..17095895 480..647 100 <- Minus
2R 17095964..17096259 184..479 100 <- Minus
2R 17098427..17098609 1..183 100   Minus

LD21131.hyp Sequence

Translation from 208 to 957

> LD21131.hyp
MADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY
TLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVL
EVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAV
VSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADV
YFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV*

LD21131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-PC 249 CG8938-PC 1..249 1..249 1306 100 Plus
GstS1-PB 249 CG8938-PB 1..249 1..249 1306 100 Plus
GstS1-PA 249 CG8938-PA 1..249 1..249 1306 100 Plus
GstS1-PD 250 CG8938-PD 1..250 1..249 1273 98 Plus

LD21131.pep Sequence

Translation from 208 to 957

> LD21131.pep
MADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY
TLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVL
EVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAV
VSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADV
YFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV*

LD21131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13422-PA 249 GF13422-PA 1..249 1..249 1281 98.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22217-PA 250 GG22217-PA 1..250 1..249 1277 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20881-PA 242 GH20881-PA 1..242 1..249 1201 94.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-PC 249 CG8938-PC 1..249 1..249 1306 100 Plus
GstS1-PB 249 CG8938-PB 1..249 1..249 1306 100 Plus
GstS1-PA 249 CG8938-PA 1..249 1..249 1306 100 Plus
GstS1-PD 250 CG8938-PD 1..250 1..249 1273 98 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21003-PA 248 GI21003-PA 1..248 1..249 1051 89.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17264-PA 254 GL17264-PA 51..254 46..249 1063 98 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21422-PA 254 GA21422-PA 51..254 46..249 1063 98 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20005-PA 249 GM20005-PA 1..249 1..249 1284 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25495-PA 249 GD25495-PA 1..249 1..249 1284 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20716-PA 249 GJ20716-PA 1..249 1..249 1057 94.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17930-PA 250 GK17930-PA 47..250 46..249 1042 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14214-PA 243 GE14214-PA 1..243 1..249 1245 97.2 Plus