Clone LD21177 Report

Search the DGRC for LD21177

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:77
Vector:pOT2
Associated Gene/TranscriptAats-cys-RA
Protein status:LD21177.pep: gold
Preliminary Size:2426
Sequenced Size:2448

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8431 2000-02-14 Blastp of sequenced clone
CG8431 2001-01-01 Release 2 assignment
Aats-cys 2008-04-29 Release 5.5 accounting
Aats-cys 2008-08-15 Release 5.9 accounting
Aats-cys 2008-12-18 5.12 accounting

Clone Sequence Records

LD21177.complete Sequence

2448 bp (2448 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132160

> LD21177.complete
ATTTGCAAGTGCAGAAGCGACTGGCTGTTTATACGTGCGCATATTATAGA
ACGGATAGATAATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTCCCGAG
GCGGTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGACAGAA
GGAGGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAGCTGCG
GACCCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTTACATT
TCCTTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTACAACAT
TCACTATGTGATGAACATTACGGACATCGACGACAAGATCATAAGGCGTG
CGCGGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAAAGCTG
CCACTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGGTTTCA
GGATACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCTCGACA
AGACACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGGCCGTT
GGCAAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTACCTAAA
CGAAGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGGTGCTC
AGATCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGGAAGAC
CAGTTCCACAACGACATGAAATCGCTAAATATTCTCCCGCCAGATGTTTT
AACTCGCGTTTCGGAGTACGTGCCACAAATCGTCACCTTTATTCAAAAGA
TTATCGACAATGGCTTGGCCTATGCAGCCAACAACTCCGTTTATTTCGAT
GTAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTGGTGCC
AGAAGCATATGGCGACACCAAGTCCCTGCAAGAAGGTGAAGGCGATCTGT
CCATCGCAGAGGATCGTCTCTCCGAGAAGCGTTCTGCCAATGACTTTGCC
TTGTGGAAGGCGAGCAAAGCCGGCGAACCCTGGTGGGATAGCCCTTGGGG
CAAGGGCCGTCCAGGCTGGCACATTGAATGCTCGGCCATGGCCTCGGATA
TCTTTGGGCCCACGTTTGATATACACACTGGCGGTGTGGACTTAAAGTTC
CCTCATCACGACAACGAGCTTGCCCAATCGGAGGCCGCTTTTAATGAGTC
GGAGTGGGTTAAGTACTTCCTGCACACGGGTCACCTCACCATAGCTGGCT
GCAAGATGTCCAAGTCGCTGAAGAACTTTGTCACCATCCAGGAAGCTCTT
AAAAAGCATTCCGCCACCCAGCTGCGACTGGCGTTCCTGCTACACTCGTG
GAAGGATACTCTTGACTACTCAGAAAACACCATGGAAATGGCCACCCAAT
ACGAAAAGTTCCTCAATGAGTTCTTCCTGAATGTCAAGGATCTGACGCGG
CATGTGCTCTCCGAAGAGCCCCGCCGGCAGTTTGATGCCTGGACAGAAGT
TGAGGCGGCTTTGCAGAAGAAATTCTCAAATGCTCAGGTCCAAGTACACG
CCAGCTTGTGTGACAACATTGATACTCGCAGCGCCCTTGACGCCATTCGA
GAGCTGGTATCCGTGTCCAATGTCTACATTCGCGACAATAAGACTAGACT
CAACAGTCTGCTGCTCCGAAACGTAGCCACATATATCACCGATCTGTTGC
ACGTGTTTGGCGCAATATCTGGTCCTCGCGGTGGCATTGGCTTCCCCGTT
AGTGGTGGCTCGGGAGCACAAGCTGCCGGCGCGGATTTAGAAACTACGGT
TTTGCCTTACGTTCAATCGCTGGCTGAATTCCGCTACTTGGTGCGGGAGC
AAGCCAAAACTCTGAAGGCCTTCGACATCCTGAAGCTCTGCGATGATCTA
CGCGACAATGTGCTGCCCAATTTGGGCGTGCGACTGGAGGACAAGGATAT
TGGAAAGTATGCCGTAAAGCTAGTCGACCGCGACTCACTTTTACGAGAAC
GGGAGGCAAAGCTGGCCGCCGAAGCGGAGAAGGCAGCAGAAAAGGAGCGC
AAGAAGCAGGCGGCTGCGGAGGCTGCAGCTGCGAAAGAAGCCCAGCGACG
TGTGAATCCCAAGGAAATGTTCCTGGCCGAAACCGAAAAGTACTCAGCGT
TCGACGAAAATGGCCTTCCCACTCACGACAAGGAGGGCAAAGAAGTCAGT
AAAGGACAGATCAAGAAGCTGCAGAAACTCCAACAGCAGCAGGAACAGCG
TTACAATGAGTATTTGGCATCAATTGAGAAAGCCTGAGACCTAAGATCAG
AGCCACCATGTTAATGATATTAGCATTTATCCGATTTAAAATCCTGAAAA
CGTACCATTTAGTTAATGCAAGAGATTTCAGTTCCCAGCTTGAAGCAATC
CATCTAATAAAATAATTTTTCTATGAAAAAAAAAAAAAAAAAAAAAAA

LD21177.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-RA 2598 Aats-cys-RA 170..2595 1..2426 12130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12031346..12032033 731..1418 3290 98.5 Plus
chr2R 21145070 chr2R 12032298..12032898 1562..2162 2885 98.7 Plus
chr2R 21145070 chr2R 12030799..12031290 239..730 2385 99 Plus
chr2R 21145070 chr2R 12032962..12033225 2162..2425 1320 100 Plus
chr2R 21145070 chr2R 12030494..12030733 1..240 1170 99.2 Plus
chr2R 21145070 chr2R 12032092..12032236 1418..1562 710 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16144027..16144714 731..1418 3440 100 Plus
2R 25286936 2R 16144979..16145579 1562..2162 3005 100 Plus
2R 25286936 2R 16143480..16143971 239..730 2460 100 Plus
2R 25286936 2R 16145643..16145907 2162..2426 1325 100 Plus
2R 25286936 2R 16143175..16143414 1..240 1200 100 Plus
2R 25286936 2R 16144773..16144917 1418..1562 725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16145226..16145913 731..1418 3440 100 Plus
2R 25260384 2R 16146178..16146778 1562..2162 3005 100 Plus
2R 25260384 2R 16144679..16145170 239..730 2460 100 Plus
2R 25260384 2R 16146842..16147106 2162..2426 1325 100 Plus
2R 25260384 2R 16144374..16144613 1..240 1200 100 Plus
2R 25260384 2R 16145972..16146116 1418..1562 725 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:15:23 has no hits.

LD21177.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:16:41 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12030494..12030733 1..240 99 -> Plus
chr2R 12030801..12031290 241..730 98 -> Plus
chr2R 12031346..12032032 731..1417 98 -> Plus
chr2R 12032092..12032236 1418..1562 99 -> Plus
chr2R 12032299..12032897 1563..2161 98 -> Plus
chr2R 12032962..12033225 2162..2425 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:30 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1..2226 62..2287 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:26 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1..2226 62..2287 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:58:06 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1..2226 62..2287 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:17 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1..2226 62..2287 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:21 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1..2226 62..2287 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:19 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 26..2450 1..2425 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:26 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 26..2450 1..2425 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:58:06 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 29..2453 1..2425 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:17 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 26..2450 1..2425 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:21 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 29..2453 1..2425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:41 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16143175..16143414 1..240 100 -> Plus
2R 16143482..16143971 241..730 100 -> Plus
2R 16144027..16144713 731..1417 100 -> Plus
2R 16144773..16144917 1418..1562 100 -> Plus
2R 16144980..16145578 1563..2161 100 -> Plus
2R 16145643..16145906 2162..2425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:41 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16143175..16143414 1..240 100 -> Plus
2R 16143482..16143971 241..730 100 -> Plus
2R 16144027..16144713 731..1417 100 -> Plus
2R 16144773..16144917 1418..1562 100 -> Plus
2R 16144980..16145578 1563..2161 100 -> Plus
2R 16145643..16145906 2162..2425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:41 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16143175..16143414 1..240 100 -> Plus
2R 16143482..16143971 241..730 100 -> Plus
2R 16144027..16144713 731..1417 100 -> Plus
2R 16144773..16144917 1418..1562 100 -> Plus
2R 16144980..16145578 1563..2161 100 -> Plus
2R 16145643..16145906 2162..2425 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:58:06 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12030680..12030919 1..240 100 -> Plus
arm_2R 12030987..12031476 241..730 100 -> Plus
arm_2R 12031532..12032218 731..1417 100 -> Plus
arm_2R 12032278..12032422 1418..1562 100 -> Plus
arm_2R 12032485..12033083 1563..2161 100 -> Plus
arm_2R 12033148..12033411 2162..2425 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:43 Download gff for LD21177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16144374..16144613 1..240 100 -> Plus
2R 16144681..16145170 241..730 100 -> Plus
2R 16145226..16145912 731..1417 100 -> Plus
2R 16145972..16146116 1418..1562 100 -> Plus
2R 16146179..16146777 1563..2161 100 -> Plus
2R 16146842..16147105 2162..2425 100   Plus

LD21177.pep Sequence

Translation from 61 to 2286

> LD21177.pep
MSKRGQPAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTV
YDASHMGHARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQN
HLFDEYAAEAQKLPLDELLGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQ
RMNDAVEALTKAVGKGDEREISEKRLLYLNEAKDPISDWLDSLKGAQIND
NAVFEALPRYWEDQFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDN
GLAYAANNSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSIAE
DRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASDIFGP
TFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMS
KSLKNFVTIQEALKKHSATQLRLAFLLHSWKDTLDYSENTMEMATQYEKF
LNEFFLNVKDLTRHVLSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLC
DNIDTRSALDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFG
AISGPRGGIGFPVSGGSGAQAAGADLETTVLPYVQSLAEFRYLVREQAKT
LKAFDILKLCDDLRDNVLPNLGVRLEDKDIGKYAVKLVDRDSLLREREAK
LAAEAEKAAEKERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDEN
GLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIEKA*

LD21177.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11862-PA 741 GF11862-PA 1..741 1..741 3455 92.6 Plus
Dana\GF12902-PA 559 GF12902-PA 136..538 207..631 589 35.8 Plus
Dana\GF12902-PA 559 GF12902-PA 39..126 9..97 234 48.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20575-PA 741 GG20575-PA 1..741 1..741 3883 96.8 Plus
Dere\GG22443-PA 560 GG22443-PA 132..539 204..631 559 34.3 Plus
Dere\GG22443-PA 560 GG22443-PA 38..126 9..98 245 47.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21680-PA 743 GH21680-PA 1..743 1..741 3106 80.9 Plus
Dgri\GH23122-PA 533 GH23122-PA 120..518 214..631 524 32.9 Plus
Dgri\GH23122-PA 533 GH23122-PA 16..105 9..99 264 50.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CysRS-PA 741 CG8431-PA 1..741 1..741 3854 100 Plus
CysRS-m-PB 558 CG8257-PB 132..558 204..654 538 33.6 Plus
CysRS-m-PA 558 CG8257-PA 132..558 204..654 538 33.6 Plus
CysRS-m-PB 558 CG8257-PB 48..126 20..98 237 53.2 Plus
CysRS-m-PA 558 CG8257-PA 48..126 20..98 237 53.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18835-PA 740 GI18835-PA 1..740 1..741 3167 83.5 Plus
Dmoj\GI18944-PA 537 GI18944-PA 111..522 204..631 529 34.9 Plus
Dmoj\GI18944-PA 537 GI18944-PA 16..106 8..99 252 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10698-PA 741 GL10698-PA 1..741 1..741 3358 90.6 Plus
Dper\GL10829-PA 556 GL10829-PA 122..540 179..631 557 33.1 Plus
Dper\GL10829-PA 556 GL10829-PA 38..126 9..98 254 47.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21073-PA 741 GA21073-PA 1..741 1..741 3368 90.7 Plus
Dpse\GA20936-PA 556 GA20936-PA 122..540 179..631 560 33.1 Plus
Dpse\GA20936-PA 556 GA20936-PA 38..126 9..98 253 47.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21666-PA 741 GM21666-PA 1..741 1..741 3939 98.8 Plus
Dsec\GM15123-PA 256 GM15123-PA 1..254 247..500 1374 98.8 Plus
Dsec\GM20229-PA 558 GM20229-PA 132..537 204..631 551 34.2 Plus
Dsec\GM20229-PA 558 GM20229-PA 38..126 9..98 249 48.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11166-PA 741 GD11166-PA 1..741 1..741 3951 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21863-PA 741 GJ21863-PA 1..741 1..741 3141 82.2 Plus
Dvir\GJ21318-PA 566 GJ21318-PA 147..550 207..631 522 34.1 Plus
Dvir\GJ21318-PA 566 GJ21318-PA 49..139 8..99 258 48.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15775-PA 741 GK15775-PA 1..741 1..741 3344 88.9 Plus
Dwil\GK22127-PA 491 GK22127-PA 55..475 179..631 555 34.5 Plus
Dwil\GK22127-PA 491 GK22127-PA 2..61 41..100 237 63.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11760-PA 741 GE11760-PA 1..741 1..741 3874 97.2 Plus
Dyak\GE12334-PA 560 GE12334-PA 132..539 204..631 546 33.8 Plus
Dyak\GE12334-PA 560 GE12334-PA 38..126 9..98 249 48.9 Plus

LD21177.hyp Sequence

Translation from 61 to 2286

> LD21177.hyp
MSKRGQPAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTV
YDASHMGHARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQN
HLFDEYAAEAQKLPLDELLGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQ
RMNDAVEALTKAVGKGDEREISEKRLLYLNEAKDPISDWLDSLKGAQIND
NAVFEALPRYWEDQFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDN
GLAYAANNSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSIAE
DRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASDIFGP
TFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMS
KSLKNFVTIQEALKKHSATQLRLAFLLHSWKDTLDYSENTMEMATQYEKF
LNEFFLNVKDLTRHVLSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLC
DNIDTRSALDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFG
AISGPRGGIGFPVSGGSGAQAAGADLETTVLPYVQSLAEFRYLVREQAKT
LKAFDILKLCDDLRDNVLPNLGVRLEDKDIGKYAVKLVDRDSLLREREAK
LAAEAEKAAEKERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDEN
GLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIEKA*

LD21177.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-PA 741 CG8431-PA 1..741 1..741 3854 100 Plus
CG8257-PB 558 CG8257-PB 132..558 204..654 538 33.6 Plus
CG8257-PA 558 CG8257-PA 132..558 204..654 538 33.6 Plus
CG8257-PB 558 CG8257-PB 48..126 20..98 237 53.2 Plus
CG8257-PA 558 CG8257-PA 48..126 20..98 237 53.2 Plus