Clone LD21194 Report

Search the DGRC for LD21194

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:211
Well:94
Vector:pOT2
Associated Gene/TranscriptMob4-RA
Protein status:LD21194.pep: gold
Preliminary Size:1300
Sequenced Size:1380

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3403 2001-01-01 Release 2 assignment
CG3403 2003-01-01 Sim4 clustering to Release 3
CG3403 2003-02-24 Blastp of sequenced clone
CG3403 2008-04-29 Release 5.5 accounting
Mob4 2008-08-15 Release 5.9 accounting
Mob4 2008-12-18 5.12 accounting

Clone Sequence Records

LD21194.complete Sequence

1380 bp (1380 high quality bases) assembled on 2003-02-24

GenBank Submission: AY070538

> LD21194.complete
TGTTTTGGAGGATAAACGCCAATTAATTGTCAAGCGATGTGCCAGCTCCT
GTAGAATACACTCAGCATACTACGGTGCAGGGATCCCACATCCGGAGACT
CCCGCGGGGCAGGGACCAGGCTAGCATTCAGTTTCTGCCAGTGATTTTCT
CATCAAGGCGTAGGCACAGACGTTGTGGATCATCGCGTCTTCGAGCGGGT
GAAACATGAAGATGGCTGACGGCTCGACCATATTGCGTAGGAACCGGCCA
GGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAGCCCCTGGAGGA
GATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCAGCTGATTAAGC
GCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCGAAGCCCAGGAT
GAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGCATGGAGCTGAA
CGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTCGACGTGCACCC
AGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCGCGCACAAGACG
CCCAAGGAATGTCCGGCCATTGACTACACACGCCACACGCTGGACGGTGC
CGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAGGGTGTCCATCA
AGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGCGGGTGTATCGC
ATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTCGACGAATTCGA
GGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGTCACAAAATATA
ATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACGTGGGTGAAAAC
GCGGCCCCTGGCGAAAGCGAGGCTTAGGAGCCCGCCCAGATTAGTCAGAC
TCGCATGAAACACTCATTCAACATACATCTATTTATATTTACCAATAGCT
TGCAAGTTGGGTTGGCTCACCCTGACAGGGAAACGATTCCACGCGGACCC
GACTCTAATGCAGATCTTGTATGTAGTTTAGATGTCAGATACACATAGAG
CTACATAACGATAACTAAGTAACAAGGGCAGACCCCCTCAAACCCGCTCG
CCCCATCTGATCCTAAGTCAGCAATTATTTCGCAAGTTATATTACGATTA
TGTTTAACTCCTTATTTTAATAAATTATATGTAGGCACACGACCTTCTCG
TGGCTGATTCCACGTCAAATCCCCGTAAACTAAACTAAATTCCCTTGACT
ACTGGCAGCCAAAACACCAACACAGCTGTACGTGACTAAAACGTGAACTT
TACTATACAAAATTACTATATACACAACAGAAATTGCAATAAAAGAAGTA
CATACATAAAAAAAAAAAAAAAAAAAAAAA

LD21194.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1497 Mob4-RA 85..1444 1..1360 6800 100 Plus
Mob4.a 1387 Mob4.a 85..922 1..838 4190 100 Plus
Mob4.b 1401 Mob4.b 681..1401 637..1357 3605 100 Plus
Mob4.b 1401 Mob4.b 33..671 1..639 3195 100 Plus
Mob4.a 1387 Mob4.a 923..1334 949..1360 2060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2582312..2583048 1357..637 3410 97.8 Minus
chr2R 21145070 chr2R 2583105..2583481 640..264 1885 100 Minus
chr2R 21145070 chr2R 2583553..2583818 266..1 1330 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695111..6695834 1360..637 3620 100 Minus
2R 25286936 2R 6695891..6696267 640..264 1885 100 Minus
2R 25286936 2R 6696339..6696604 266..1 1330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6696310..6697033 1360..637 3620 100 Minus
2R 25260384 2R 6697090..6697466 640..264 1885 100 Minus
2R 25260384 2R 6697538..6697803 266..1 1330 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:15:26 has no hits.

LD21194.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:16:42 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2583554..2583818 1..265 100   Minus
chr2R 2582312..2582587 1081..1357 99 <- Minus
chr2R 2582605..2583045 640..1080 100 <- Minus
chr2R 2583106..2583479 266..639 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:32 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 206..877 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:25 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 206..877 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:58:08 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 206..877 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:48 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 206..877 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:25 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 206..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:44 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 22..1378 1..1357 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:25 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 22..1378 1..1357 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:58:08 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 58..1414 1..1357 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:49 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 22..1378 1..1357 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:25 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 58..1414 1..1357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:42 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6695114..6695831 640..1357 100 <- Minus
2R 6695892..6696265 266..639 100 <- Minus
2R 6696340..6696604 1..265 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:42 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6695114..6695831 640..1357 100 <- Minus
2R 6695892..6696265 266..639 100 <- Minus
2R 6696340..6696604 1..265 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:42 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6695114..6695831 640..1357 100 <- Minus
2R 6695892..6696265 266..639 100 <- Minus
2R 6696340..6696604 1..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:58:08 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2582619..2583336 640..1357 100 <- Minus
arm_2R 2583397..2583770 266..639 100 <- Minus
arm_2R 2583845..2584109 1..265 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:10 Download gff for LD21194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6696313..6697030 640..1357 100 <- Minus
2R 6697091..6697464 266..639 100 <- Minus
2R 6697539..6697803 1..265 100   Minus

LD21194.pep Sequence

Translation from 205 to 876

> LD21194.pep
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEA*

LD21194.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13799-PA 223 GF13799-PA 1..223 1..223 1214 99.1 Plus
Dana\GF15759-PA 220 GF15759-PA 44..205 53..206 145 23.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10811-PA 223 GG10811-PA 1..223 1..223 1218 100 Plus
Dere\GG10099-PA 220 GG10099-PA 44..205 53..206 146 23.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20146-PA 223 GH20146-PA 1..223 1..223 1199 98.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-PA 223 CG3403-PA 1..223 1..223 1198 100 Plus
Mob4-PB 227 CG3403-PB 1..227 1..223 1183 98.2 Plus
Mob3-PA 220 CG4946-PA 44..205 53..206 149 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20237-PA 223 GI20237-PA 1..223 1..223 1199 98.2 Plus
Dmoj\GI18135-PA 221 GI18135-PA 44..205 53..206 149 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10986-PA 223 GL10986-PA 1..223 1..223 1193 97.8 Plus
Dper\GL18994-PA 220 GL18994-PA 44..205 53..206 160 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17429-PA 223 GA17429-PA 1..223 1..223 1193 97.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20860-PA 223 GM20860-PA 1..223 1..223 1218 100 Plus
Dsec\GM18081-PA 220 GM18081-PA 44..205 53..206 147 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10311-PA 223 GD10311-PA 1..223 1..223 1212 99.6 Plus
Dsim\GD23671-PA 220 GD23671-PA 44..205 53..206 150 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20189-PA 223 GJ20189-PA 1..223 1..223 1196 97.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23144-PA 224 GK23144-PA 1..224 1..223 1169 95.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24587-PA 223 GE24587-PA 1..223 1..223 1215 99.6 Plus
Dyak\GE18913-PA 220 GE18913-PA 44..205 53..206 146 23.2 Plus

LD21194.hyp Sequence

Translation from 205 to 876

> LD21194.hyp
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEA*

LD21194.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-PA 223 CG3403-PA 1..223 1..223 1198 100 Plus
Mob4-PB 227 CG3403-PB 1..227 1..223 1183 98.2 Plus
Mob3-PA 220 CG4946-PA 44..205 53..206 149 23.5 Plus