Clone LD21269 Report

Search the DGRC for LD21269

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:212
Well:69
Vector:pOT2
Associated Gene/TranscriptCG7182-RA
Protein status:LD21269.pep: gold
Preliminary Size:2200
Sequenced Size:1792

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7182 2001-01-01 Release 2 assignment
CG7182 2001-09-19 Blastp of sequenced clone
CG7182 2003-01-01 Sim4 clustering to Release 3
CG7182 2008-04-29 Release 5.5 accounting
CG7182 2008-08-15 Release 5.9 accounting
CG7182 2008-12-18 5.12 accounting

Clone Sequence Records

LD21269.complete Sequence

1792 bp (1792 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058504

> LD21269.complete
CTACACAACACTACCGCGCGTGCTGGAAAAAAACGTGCGCGTTTATTCGT
TGCATTTTGTTAAGATAATTCCTTAAGTCCGGGTACTTCTGACTCCGATT
CCGACTCCCAAAAGATGTGGCCGCGATTTGGCATTAAGATTGGCAACAGC
ACGCTTTGCATCGCCCATGTGCGCGCGGATGGCAAGGCGGAGGTGATCGC
CAACAAACAGGGCGACCGAGTGTCCCAAGCGTGCCTTCTCTGGGACGGAG
CCTCGGAGATCGAATGTGGCCTCACGGCCAAGCAGAAGATGGCCAACCGT
CCGCGCCAGGCGGTGGCGCACAGCTTTCAGTTGCTTCAGCCCAAGGAAGA
GCTCACGGAGGAGAAACTGTCCAGTGCGCTGCGTGAAATACCCTGCGACT
TTGACAAGGAGGAGCTGGTGTTCCGGATGGAGCACACTGTACCCTCCGAC
AGGGAGGACCAAGACGATAGAGTTGTGACCAAGGACCTCAGCGCCTATCA
GGTGACGGTGGAGCTGCTGCGCGCTGAGCTGGAGCTGGCCCATCAATATC
ACACGGACGGGGAGCAGGCGCCCATTGCCGTGCTATCCATACCCAGCTAC
TATCCCGCCTCGGCCTACAAACTGCTAGCAGATGCCGCTCAAACCGCTGG
CTTCCATGTGGCCCAGATTATAACCGAACCCACGGCCGCCGTTCTAGGCT
ATAGCATCGGCGAGGAGCAGACGGAACAGCGCCGCCATGTGCTGACAATC
AAATGCGGTGGCTTATATAGCGACATCGCATTCTACTCCGTCCAAAATGG
CCTGTTCGTTCAGCTGGCCACTTTCGGACCCTTCCCCATCGGTGGCCGGC
AATTCACCGAGGCCTTGGTGCAGTTTATTTGCGAGGAGTTCCGTCGCAAG
TACAAGCTAGATCCGCATGAGTCTCGCCGCTCAGTGGCCAAAATACGCAC
TGCCGCCGCCAATTGCAAACACATCCTGACCACGATGCCTTCCACGCAAC
TTTATATCGACTCCCTGATGGACGGCGTTGATTACAATGCCCAGATGTCG
CGTGCTCGCTTCGAGAGCCTCATACAGCCAGTGATCAATAACCTCATCCA
GCAGCTAGGCGAGTGTGTGGAGCAGGCGCAAAAGGAGCATCCCGGGTTGA
GTAAAATAGATGACATCGTTCTACTAGGCGCCACAATGCAAATCCCCAAG
CTTCAGGCGGCAGTGGGAGCCCGCTTCCCGGATGCCAAGCTCCACAACAG
CCATTCGGCGGACGAGGTTGTGGCCATCGGCTGCGCGCGCCAAGCTGTGT
GCCTGATTGACCCCCTCGAACAGCAGCTTCACAAGGAGGAGGATTGCGTG
GTGGCTGAGGATGACCTCTTCATTTGGCACGGTAATGACGAATCCAACGC
CAAATTGGTCCTGGGCAGGGGGAGCGTTCTGCCTGCCAAAATACGGATAT
CACTGCCCCAATCAGAGGAGGGAAAGGGTGACGACGTAAGCAAAGCAGCT
GCTTCGTTTAAGCTGCGCACCGGGGAGAGCGAGATCCTGGCCCGTCTGCC
CGACAGCACGATACCGGAGGATGGGCTTTACCAGCTAGAGGTTGAGGTAG
ATGTGGACGATAAGGACGGCAACGTGGTGCCGCTGGTGCGACTGCGCTGC
ATGTGAGAGCCGGATTGTGAACCGGAACCGGTGCGATGTCGCCTAGACTA
TTTATTGTTGCTAGCCTAATGATTACAATACAAAAACTTAATAAAGATAA
ATACGCAAGCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21269.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7182-RA 1913 CG7182-RA 148..1913 1..1766 8830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8336453..8338215 1763..1 8635 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8344418..8346183 1766..1 8830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8337518..8339283 1766..1 8830 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:00:12 has no hits.

LD21269.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:01:08 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8336453..8338215 1..1763 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:40 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 1..1542 115..1656 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:09 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 1..1542 115..1656 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:15 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 1..1542 115..1656 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:47 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 1..1542 115..1656 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:30 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 1..1542 115..1656 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:53:03 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 148..1910 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:09 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 148..1910 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:15 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 24..1786 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:47 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 148..1910 1..1763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:30 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
CG7182-RA 24..1786 1..1763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:08 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8344421..8346183 1..1763 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:08 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8344421..8346183 1..1763 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:01:08 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8344421..8346183 1..1763 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:15 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8337521..8339283 1..1763 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:42 Download gff for LD21269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8337521..8339283 1..1763 100   Minus

LD21269.pep Sequence

Translation from 114 to 1655

> LD21269.pep
MWPRFGIKIGNSTLCIAHVRADGKAEVIANKQGDRVSQACLLWDGASEIE
CGLTAKQKMANRPRQAVAHSFQLLQPKEELTEEKLSSALREIPCDFDKEE
LVFRMEHTVPSDREDQDDRVVTKDLSAYQVTVELLRAELELAHQYHTDGE
QAPIAVLSIPSYYPASAYKLLADAAQTAGFHVAQIITEPTAAVLGYSIGE
EQTEQRRHVLTIKCGGLYSDIAFYSVQNGLFVQLATFGPFPIGGRQFTEA
LVQFICEEFRRKYKLDPHESRRSVAKIRTAAANCKHILTTMPSTQLYIDS
LMDGVDYNAQMSRARFESLIQPVINNLIQQLGECVEQAQKEHPGLSKIDD
IVLLGATMQIPKLQAAVGARFPDAKLHNSHSADEVVAIGCARQAVCLIDP
LEQQLHKEEDCVVAEDDLFIWHGNDESNAKLVLGRGSVLPAKIRISLPQS
EEGKGDDVSKAAASFKLRTGESEILARLPDSTIPEDGLYQLEVEVDVDDK
DGNVVPLVRLRCM*

LD21269.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24191-PA 513 GF24191-PA 1..513 1..513 2504 90.1 Plus
Dana\GF16629-PA 644 GF16629-PA 2..378 3..397 439 31.1 Plus
Dana\GF16630-PA 644 GF16630-PA 2..378 3..397 439 31.1 Plus
Dana\GF16631-PA 644 GF16631-PA 2..378 3..397 439 31.1 Plus
Dana\GF18385-PA 644 GF18385-PA 2..378 3..397 439 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15089-PA 513 GG15089-PA 1..513 1..513 2695 97.9 Plus
Dere\GG19049-PA 643 GG19049-PA 2..378 3..397 442 31.1 Plus
Dere\GG19027-PA 643 GG19027-PA 2..378 3..397 442 31.1 Plus
Dere\GG17119-PA 643 GG17119-PA 2..378 3..397 442 31.1 Plus
Dere\GG19004-PA 643 GG19004-PA 2..378 3..397 442 31.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16414-PA 515 GH16414-PA 1..515 1..513 2160 78.1 Plus
Dgri\GH18848-PA 652 GH18848-PA 5..481 3..498 433 26.9 Plus
Dgri\GH19098-PA 631 GH19098-PA 2..378 3..397 429 30.3 Plus
Dgri\GH14643-PA 645 GH14643-PA 5..481 3..498 429 27.6 Plus
Dgri\GH18489-PA 631 GH18489-PA 2..378 3..397 427 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7182-PB 513 CG7182-PB 1..513 1..513 2634 100 Plus
CG7182-PA 513 CG7182-PA 1..513 1..513 2634 100 Plus
Hsp70Bbb-PA 641 CG5834-PA 2..378 3..397 442 30.6 Plus
Hsp70Ba-PA 641 CG31449-PA 2..378 3..397 440 30.6 Plus
Hsp70Bc-PA 641 CG6489-PA 2..378 3..397 440 30.6 Plus
Hsp70Bb-PA 641 CG31359-PA 2..378 3..397 440 30.6 Plus
Hsp70Aa-PA 642 CG31366-PA 2..378 3..397 436 30.3 Plus
Hsp70Ab-PA 642 CG18743-PA 2..378 3..397 436 30.3 Plus
Hsc70-4-PG 651 CG4264-PG 5..481 3..498 435 26.5 Plus
Hsc70-4-PB 651 CG4264-PB 5..481 3..498 435 26.5 Plus
Hsc70-4-PD 651 CG4264-PD 5..481 3..498 435 26.5 Plus
Hsc70-4-PC 651 CG4264-PC 5..481 3..498 435 26.5 Plus
Hsc70-4-PA 651 CG4264-PA 5..481 3..498 435 26.5 Plus
Hsc70-4-PF 651 CG4264-PF 5..481 3..498 435 26.5 Plus
Hsc70-4-PE 651 CG4264-PE 5..481 3..498 435 26.5 Plus
Hsp68-PA 635 CG5436-PA 2..378 3..397 427 30.3 Plus
Hsc70-1-PA 641 CG8937-PA 5..380 3..397 425 29.9 Plus
Hsc70-2-PA 633 CG7756-PA 5..381 3..397 416 30.3 Plus
Hsc70-1-PD 555 CG8937-PD 56..294 155..397 372 34.2 Plus
Hsc70-1-PC 555 CG8937-PC 56..294 155..397 372 34.2 Plus
Hsc70-3-PE 656 CG4147-PE 33..504 6..498 366 23.5 Plus
Hsc70-3-PC 656 CG4147-PC 33..504 6..498 366 23.5 Plus
Hsc70-3-PD 656 CG4147-PD 33..504 6..498 366 23.5 Plus
Hsc70-3-PA 656 CG4147-PA 33..504 6..498 366 23.5 Plus
Hsc70-3-PB 656 CG4147-PB 33..504 6..498 366 23.5 Plus
Hsc70-5-PB 686 CG8542-PB 56..424 6..393 291 27 Plus
Hsc70-5-PA 686 CG8542-PA 56..424 6..393 291 27 Plus
Hsc70Cb-PI 804 CG6603-PI 5..380 6..397 213 22.6 Plus
Hsc70Cb-PF 804 CG6603-PF 5..380 6..397 213 22.6 Plus
Hsc70Cb-PE 804 CG6603-PE 5..380 6..397 213 22.6 Plus
Hsc70Cb-PC 804 CG6603-PC 5..380 6..397 213 22.6 Plus
Hsc70Cb-PB 804 CG6603-PB 5..380 6..397 213 22.6 Plus
Hsc70Cb-PA 804 CG6603-PA 5..380 6..397 213 22.6 Plus
Hsc70Cb-PH 836 CG6603-PH 5..380 6..397 213 22.6 Plus
Hsc70Cb-PG 836 CG6603-PG 5..380 6..397 213 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12494-PA 516 GI12494-PA 1..516 1..513 2227 79.2 Plus
Dmoj\GI11627-PA 644 GI11627-PA 5..481 3..498 434 27 Plus
Dmoj\GI24163-PA 640 GI24163-PA 2..378 3..397 428 30.8 Plus
Dmoj\GI22919-PA 651 GI22919-PA 5..481 3..498 428 26.9 Plus
Dmoj\GI22499-PA 641 GI22499-PA 2..378 3..397 425 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24579-PA 484 GL24579-PA 1..484 1..513 2172 77.8 Plus
Dper\GL24150-PA 642 GL24150-PA 2..378 3..397 453 31.3 Plus
Dper\GL23398-PA 643 GL23398-PA 2..379 3..397 448 31.1 Plus
Dper\GL27169-PA 641 GL27169-PA 2..378 3..397 440 30.8 Plus
Dper\GL12534-PA 652 GL12534-PA 5..481 3..498 438 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20162-PA 511 GA20162-PA 1..511 1..513 2276 81.1 Plus
Dpse\GA18881-PA 642 GA18881-PA 2..378 3..397 453 31.3 Plus
Dpse\GA19632-PA 641 GA19632-PA 2..378 3..397 440 30.8 Plus
Dpse\GA18066-PA 652 GA18066-PA 5..481 3..498 438 27.1 Plus
Dpse\GA20564-PA 634 GA20564-PA 5..381 3..397 431 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24947-PA 513 GM24947-PA 1..513 1..513 2694 97.5 Plus
Dsec\GM26002-PA 593 GM26002-PA 2..378 3..397 445 31.1 Plus
Dsec\GM26058-PA 644 GM26058-PA 2..378 3..397 442 31.1 Plus
Dsec\GM23988-PA 644 GM23988-PA 2..378 3..397 442 31.1 Plus
Dsec\Hsp68-PA 635 GM23516-PA 2..378 3..397 439 31.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12999-PA 513 GD12999-PA 1..513 1..513 2704 97.9 Plus
Dsim\Hsp70Ba-PA 643 GD20560-PA 2..378 3..397 445 31.1 Plus
Dsim\Hsp70Aa-PA 644 GD20621-PA 2..378 3..397 442 31.1 Plus
Dsim\GD14466-PA 641 GD14466-PA 5..380 3..397 437 29.9 Plus
Dsim\Hsc70-4-PA 651 GD18998-PA 5..481 3..498 430 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12398-PA 515 GJ12398-PA 1..515 1..513 2268 80.3 Plus
Dvir\GJ11309-PA 639 GJ11309-PA 5..380 3..397 433 29.4 Plus
Dvir\GJ23202-PA 652 GJ23202-PA 5..481 3..498 428 26.9 Plus
Dvir\Hsp70f-PA 593 GJ11062-PA 2..378 3..397 422 29.8 Plus
Dvir\Hsp70a-PA 483 GJ10099-PA 1..378 2..397 421 29.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18039-PA 513 GK18039-PA 1..513 1..513 2283 81.2 Plus
Dwil\GK10980-PA 655 GK10980-PA 2..378 3..397 454 31.1 Plus
Dwil\GK13736-PA 642 GK13736-PA 2..378 3..397 440 30.6 Plus
Dwil\GK13555-PA 638 GK13555-PA 2..378 3..397 438 30.6 Plus
Dwil\GK12230-PA 635 GK12230-PA 5..381 3..397 431 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21314-PA 513 GE21314-PA 1..513 1..513 2679 97.3 Plus
Dyak\Hsp68-PA 635 GE10832-PA 2..378 3..397 439 30.8 Plus
Dyak\GE21989-PA 641 GE21989-PA 5..380 3..397 437 29.9 Plus
Dyak\Hsc70-4-PA 651 GE24282-PA 5..481 3..498 430 26.7 Plus
Dyak\GE26242-PA 638 GE26242-PA 5..381 3..397 425 29.8 Plus

LD21269.hyp Sequence

Translation from 114 to 1655

> LD21269.hyp
MWPRFGIKIGNSTLCIAHVRADGKAEVIANKQGDRVSQACLLWDGASEIE
CGLTAKQKMANRPRQAVAHSFQLLQPKEELTEEKLSSALREIPCDFDKEE
LVFRMEHTVPSDREDQDDRVVTKDLSAYQVTVELLRAELELAHQYHTDGE
QAPIAVLSIPSYYPASAYKLLADAAQTAGFHVAQIITEPTAAVLGYSIGE
EQTEQRRHVLTIKCGGLYSDIAFYSVQNGLFVQLATFGPFPIGGRQFTEA
LVQFICEEFRRKYKLDPHESRRSVAKIRTAAANCKHILTTMPSTQLYIDS
LMDGVDYNAQMSRARFESLIQPVINNLIQQLGECVEQAQKEHPGLSKIDD
IVLLGATMQIPKLQAAVGARFPDAKLHNSHSADEVVAIGCARQAVCLIDP
LEQQLHKEEDCVVAEDDLFIWHGNDESNAKLVLGRGSVLPAKIRISLPQS
EEGKGDDVSKAAASFKLRTGESEILARLPDSTIPEDGLYQLEVEVDVDDK
DGNVVPLVRLRCM*

LD21269.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7182-PB 513 CG7182-PB 1..513 1..513 2634 100 Plus
CG7182-PA 513 CG7182-PA 1..513 1..513 2634 100 Plus
Hsp70Bbb-PA 641 CG5834-PA 2..378 3..397 442 30.6 Plus
Hsp70Bc-PA 641 CG6489-PA 2..378 3..397 440 30.6 Plus
Hsp70Bb-PA 641 CG31359-PA 2..378 3..397 440 30.6 Plus