Clone LD21294 Report

Search the DGRC for LD21294

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:212
Well:94
Vector:pOT2
Associated Gene/Transcriptdob-RA
Protein status:LD21294.pep: gold
Preliminary Size:2200
Sequenced Size:1845

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5560 2001-01-01 Release 2 assignment
CG5560 2001-11-29 Blastp of sequenced clone
CG5560 2003-01-01 Sim4 clustering to Release 3
dob 2008-04-29 Release 5.5 accounting
dob 2008-08-15 Release 5.9 accounting
dob 2008-12-18 5.12 accounting

Clone Sequence Records

LD21294.complete Sequence

1845 bp (1845 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069470

> LD21294.complete
TAGAAGAAAAAACGTCAACAAAAAATCAGAAAACCCAGGCGAAAAAGAGA
CAGGCATACCGGATTATATGTCAGTTTTAGCTGATCACGTGAAGAGCTTA
TTTGCCACGACTAGGTTAAATTCGCAAAGATGAAGATCCGAACCAGGAGG
AGTCTTTCCTTTTCCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGT
GGCCGTCTGCCTACGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTG
CCGGTGCATCCGCCGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTT
CCGCTGGAATGCATGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACA
ACGGCATTCGTTGGGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCC
TTCTCGAGGGCATGCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCC
AGCGGACGACTTCATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGT
GGTAATGTCGGAGTTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGT
GCTCCTGCTTCATTCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGA
GGAGTTCGCTATATGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGA
CGAGCACACCGTCACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCC
CACGGGATCAGAACCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAAC
ACTTGCATCCGATTGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTT
GGTGCCGGGCAGGGCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACG
ATGATACGCTCCAATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTC
AAGATCCAGGAGAAGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAG
GGAGAAGGAGCTGCGGGAGACCCCAAGGGATCTTGAGAAGGTGCACACAA
ATCGCATGACTACAAACAATGTGCAGCACAAGAAGCGAAGGAATCGAAAA
CAGAGGACTCAAAGACAAACTCTGCAGAGGACCAAGAAAAACCAGCAGGA
AAAGATCAGGAACGGAAGGAGTTTAGAAATGGAGATCAGAAATCAGGAGA
AGAACCACCAAGAAAGCACCAACAGCAGCGTTGAGAATCTGACACCGATC
GCAGAGAAACGTCTGGAGAATAGGCCACCAGAGGAGCACAATCACTATGG
CAGCTCACTCATGGGCTCCACTTGGTCGCTCCTTCGTCGGGTTATGTTCG
CTCCGCCGCTGGCCAGGCACATGGTCCAAGTGATCGCCCGCCATCTCAGC
CAGAGTCTCACGCTCTGCGATCAGCCGCACTTTGATCTCGCTCTGATGCA
GGCACCTGCCGCCTGCCATCCCTCGACCACCTCCTGCCCCCCATCCACGC
CACTGGGTGATAGCGATAACGACAAAGTCAAGGCCCAATGTGTGTGCGAG
GCCAGCCAAATTGAATCGGAAGATCAGGTGGCTGAGGTGGCTGAAGTAGA
GGGGACATCCGGTGTTCATTAGGCGCCATTAGCTTTATCAGCGATCGTCC
CATCGATCGGTTTCCAATTGATTTTTATGCCTGTTCGCGCAATTACTTTT
ATTCAATGGACAAACTTCAAACTTTTCCGCGTTTTGTTTATCTCAAACCT
CGTATTTTTAAATGTTATTTTTTTTATGTACTGACTGCTGTGAACAAAAT
AAATTTGATCAAATATAATTGTAATTTATGTATAGCAACAAATTATAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21294.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
dob-RA 1859 dob-RA 62..1856 1..1795 8975 100 Plus
dob.a 2135 dob.a 62..1856 1..1795 8975 100 Plus
dob.b 2257 dob.b 62..1856 1..1795 8975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14958039..14959242 592..1795 5885 99.3 Plus
chrX 22417052 chrX 14957218..14957813 1..596 2980 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15067885..15069088 592..1795 6020 100 Plus
X 23542271 X 15067064..15067659 1..596 2980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15075983..15077186 592..1795 6020 100 Plus
X 23527363 X 15075162..15075757 1..596 2980 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:05:24 has no hits.

LD21294.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:06:25 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14957218..14957811 1..594 100 -> Plus
chrX 14958042..14959242 595..1796 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:44 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:00 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:26:10 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:14 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:37 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:39 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 62..1856 1..1796 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:00 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 62..1856 1..1796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:26:10 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 58..1852 1..1796 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:14 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 62..1856 1..1796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:37 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 58..1852 1..1796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:25 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
X 15067064..15067657 1..594 100 -> Plus
X 15067888..15069088 595..1796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:25 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
X 15067064..15067657 1..594 100 -> Plus
X 15067888..15069088 595..1796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:25 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
X 15067064..15067657 1..594 100 -> Plus
X 15067888..15069088 595..1796 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:26:10 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14961097..14961690 1..594 100 -> Plus
arm_X 14961921..14963121 595..1796 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:37 Download gff for LD21294.complete
Subject Subject Range Query Range Percent Splice Strand
X 15075162..15075755 1..594 100 -> Plus
X 15075986..15077186 595..1796 99   Plus

LD21294.hyp Sequence

Translation from 129 to 1571

> LD21294.hyp
MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA
CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP
EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG
LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ
LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN
SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH
KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS
VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ
VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV
KAQCVCEASQIESEDQVAEVAEVEGTSGVH*

LD21294.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
dob-PA 480 CG5560-PA 1..480 1..480 2530 100 Plus
bmm-PA 507 CG5295-PA 2..288 8..293 937 61.2 Plus
bmm-PB 553 CG5295-PB 2..288 8..293 937 61.2 Plus

LD21294.pep Sequence

Translation from 129 to 1571

> LD21294.pep
MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA
CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP
EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG
LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ
LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN
SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH
KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS
VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ
VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV
KAQCVCEASQIESEDQVAEVAEVEGTSGVH*

LD21294.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21217-PA 434 GF21217-PA 1..423 3..452 1274 60 Plus
Dana\GF25180-PA 507 GF25180-PA 2..275 8..280 972 64.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17860-PA 448 GG17860-PA 1..448 1..452 1982 87 Plus
Dere\GG13706-PA 507 GG13706-PA 2..275 8..280 970 63.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17183-PA 499 GH17183-PA 2..246 8..254 976 69.6 Plus
Dgri\GH11087-PA 504 GH11087-PA 2..246 8..254 950 67.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
dob-PA 480 CG5560-PA 1..480 1..480 2530 100 Plus
bmm-PA 507 CG5295-PA 2..288 8..293 937 61.2 Plus
bmm-PB 553 CG5295-PB 2..288 8..293 937 61.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13942-PA 482 GI13942-PA 2..447 8..474 974 44.7 Plus
Dmoj\GI17604-PA 504 GI17604-PA 2..246 8..254 960 68 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15174-PA 415 GL15174-PA 2..248 8..254 1026 80.2 Plus
Dper\GL26073-PA 282 GL26073-PA 1..220 62..280 724 60.8 Plus
Dper\GL19691-PA 89 GL19691-PA 4..66 6..68 232 82.5 Plus
Dper\GL19694-PA 89 GL19694-PA 4..66 6..68 225 81 Plus
Dper\GL15291-PA 89 GL15291-PA 4..66 6..68 224 81 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18971-PA 419 GA18971-PA 4..252 6..254 1030 79.9 Plus
Dpse\GA18792-PA 507 GA18792-PA 2..275 8..280 970 63.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24528-PA 507 GM24528-PA 2..275 8..280 970 63.8 Plus
Dsec\GM12054-PA 362 GM12054-PA 121..362 248..480 906 75.6 Plus
Dsec\GM12054-PA 362 GM12054-PA 1..156 1..156 784 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17188-PA 481 GD17188-PA 1..481 1..480 2355 93.8 Plus
Dsim\GD12598-PA 507 GD12598-PA 2..275 8..280 970 63.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13733-PA 503 GJ13733-PA 2..275 8..280 981 64.5 Plus
Dvir\GJ17950-PA 504 GJ17950-PA 2..377 8..419 960 47.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10534-PA 507 GK10534-PA 2..275 8..280 969 63.8 Plus
Dwil\GK16259-PA 403 GK16259-PA 2..241 8..247 850 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17162-PA 453 GE17162-PA 1..453 1..452 2141 90.1 Plus
Dyak\GE20001-PA 507 GE20001-PA 2..275 8..280 970 63.8 Plus