BDGP Sequence Production Resources |
Search the DGRC for LD21294
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 212 |
Well: | 94 |
Vector: | pOT2 |
Associated Gene/Transcript | dob-RA |
Protein status: | LD21294.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 1845 |
Gene | Date | Evidence |
---|---|---|
CG5560 | 2001-01-01 | Release 2 assignment |
CG5560 | 2001-11-29 | Blastp of sequenced clone |
CG5560 | 2003-01-01 | Sim4 clustering to Release 3 |
dob | 2008-04-29 | Release 5.5 accounting |
dob | 2008-08-15 | Release 5.9 accounting |
dob | 2008-12-18 | 5.12 accounting |
1845 bp (1845 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069470
> LD21294.complete TAGAAGAAAAAACGTCAACAAAAAATCAGAAAACCCAGGCGAAAAAGAGA CAGGCATACCGGATTATATGTCAGTTTTAGCTGATCACGTGAAGAGCTTA TTTGCCACGACTAGGTTAAATTCGCAAAGATGAAGATCCGAACCAGGAGG AGTCTTTCCTTTTCCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGT GGCCGTCTGCCTACGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTG CCGGTGCATCCGCCGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTT CCGCTGGAATGCATGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACA ACGGCATTCGTTGGGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCC TTCTCGAGGGCATGCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCC AGCGGACGACTTCATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGT GGTAATGTCGGAGTTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGT GCTCCTGCTTCATTCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGA GGAGTTCGCTATATGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGA CGAGCACACCGTCACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCC CACGGGATCAGAACCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAAC ACTTGCATCCGATTGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTT GGTGCCGGGCAGGGCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACG ATGATACGCTCCAATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTC AAGATCCAGGAGAAGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAG GGAGAAGGAGCTGCGGGAGACCCCAAGGGATCTTGAGAAGGTGCACACAA ATCGCATGACTACAAACAATGTGCAGCACAAGAAGCGAAGGAATCGAAAA CAGAGGACTCAAAGACAAACTCTGCAGAGGACCAAGAAAAACCAGCAGGA AAAGATCAGGAACGGAAGGAGTTTAGAAATGGAGATCAGAAATCAGGAGA AGAACCACCAAGAAAGCACCAACAGCAGCGTTGAGAATCTGACACCGATC GCAGAGAAACGTCTGGAGAATAGGCCACCAGAGGAGCACAATCACTATGG CAGCTCACTCATGGGCTCCACTTGGTCGCTCCTTCGTCGGGTTATGTTCG CTCCGCCGCTGGCCAGGCACATGGTCCAAGTGATCGCCCGCCATCTCAGC CAGAGTCTCACGCTCTGCGATCAGCCGCACTTTGATCTCGCTCTGATGCA GGCACCTGCCGCCTGCCATCCCTCGACCACCTCCTGCCCCCCATCCACGC CACTGGGTGATAGCGATAACGACAAAGTCAAGGCCCAATGTGTGTGCGAG GCCAGCCAAATTGAATCGGAAGATCAGGTGGCTGAGGTGGCTGAAGTAGA GGGGACATCCGGTGTTCATTAGGCGCCATTAGCTTTATCAGCGATCGTCC CATCGATCGGTTTCCAATTGATTTTTATGCCTGTTCGCGCAATTACTTTT ATTCAATGGACAAACTTCAAACTTTTCCGCGTTTTGTTTATCTCAAACCT CGTATTTTTAAATGTTATTTTTTTTATGTACTGACTGCTGTGAACAAAAT AAATTTGATCAAATATAATTGTAATTTATGTATAGCAACAAATTATAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 14957218..14957811 | 1..594 | 100 | -> | Plus |
chrX | 14958042..14959242 | 595..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 1..1443 | 130..1572 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 1..1443 | 130..1572 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 1..1443 | 130..1572 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 1..1443 | 130..1572 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 1..1443 | 130..1572 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 62..1856 | 1..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 62..1856 | 1..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 58..1852 | 1..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 62..1856 | 1..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dob-RA | 58..1852 | 1..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15067064..15067657 | 1..594 | 100 | -> | Plus |
X | 15067888..15069088 | 595..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15067064..15067657 | 1..594 | 100 | -> | Plus |
X | 15067888..15069088 | 595..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15067064..15067657 | 1..594 | 100 | -> | Plus |
X | 15067888..15069088 | 595..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 14961097..14961690 | 1..594 | 100 | -> | Plus |
arm_X | 14961921..14963121 | 595..1796 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15075162..15075755 | 1..594 | 100 | -> | Plus |
X | 15075986..15077186 | 595..1796 | 99 | Plus |
Translation from 129 to 1571
> LD21294.hyp MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV KAQCVCEASQIESEDQVAEVAEVEGTSGVH*
Translation from 129 to 1571
> LD21294.pep MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV KAQCVCEASQIESEDQVAEVAEVEGTSGVH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21217-PA | 434 | GF21217-PA | 1..423 | 3..452 | 1274 | 60 | Plus |
Dana\GF25180-PA | 507 | GF25180-PA | 2..275 | 8..280 | 972 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17860-PA | 448 | GG17860-PA | 1..448 | 1..452 | 1982 | 87 | Plus |
Dere\GG13706-PA | 507 | GG13706-PA | 2..275 | 8..280 | 970 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17183-PA | 499 | GH17183-PA | 2..246 | 8..254 | 976 | 69.6 | Plus |
Dgri\GH11087-PA | 504 | GH11087-PA | 2..246 | 8..254 | 950 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dob-PA | 480 | CG5560-PA | 1..480 | 1..480 | 2530 | 100 | Plus |
bmm-PA | 507 | CG5295-PA | 2..288 | 8..293 | 937 | 61.2 | Plus |
bmm-PB | 553 | CG5295-PB | 2..288 | 8..293 | 937 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13942-PA | 482 | GI13942-PA | 2..447 | 8..474 | 974 | 44.7 | Plus |
Dmoj\GI17604-PA | 504 | GI17604-PA | 2..246 | 8..254 | 960 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15174-PA | 415 | GL15174-PA | 2..248 | 8..254 | 1026 | 80.2 | Plus |
Dper\GL26073-PA | 282 | GL26073-PA | 1..220 | 62..280 | 724 | 60.8 | Plus |
Dper\GL19691-PA | 89 | GL19691-PA | 4..66 | 6..68 | 232 | 82.5 | Plus |
Dper\GL19694-PA | 89 | GL19694-PA | 4..66 | 6..68 | 225 | 81 | Plus |
Dper\GL15291-PA | 89 | GL15291-PA | 4..66 | 6..68 | 224 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18971-PA | 419 | GA18971-PA | 4..252 | 6..254 | 1030 | 79.9 | Plus |
Dpse\GA18792-PA | 507 | GA18792-PA | 2..275 | 8..280 | 970 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24528-PA | 507 | GM24528-PA | 2..275 | 8..280 | 970 | 63.8 | Plus |
Dsec\GM12054-PA | 362 | GM12054-PA | 121..362 | 248..480 | 906 | 75.6 | Plus |
Dsec\GM12054-PA | 362 | GM12054-PA | 1..156 | 1..156 | 784 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17188-PA | 481 | GD17188-PA | 1..481 | 1..480 | 2355 | 93.8 | Plus |
Dsim\GD12598-PA | 507 | GD12598-PA | 2..275 | 8..280 | 970 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13733-PA | 503 | GJ13733-PA | 2..275 | 8..280 | 981 | 64.5 | Plus |
Dvir\GJ17950-PA | 504 | GJ17950-PA | 2..377 | 8..419 | 960 | 47.2 | Plus |