BDGP Sequence Production Resources |
Search the DGRC for LD21304
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 213 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | pen-RA |
Protein status: | LD21304.pep: gold |
Preliminary Size: | 2525 |
Sequenced Size: | 2368 |
Gene | Date | Evidence |
---|---|---|
CG1685 | 2000-02-14 | Blastp of sequenced clone |
CG1704 | 2001-01-01 | Release 2 assignment |
CG1696 | 2001-01-01 | Release 2 assignment |
CG1801 | 2001-01-01 | Release 2 assignment |
CG1693 | 2001-01-01 | Release 2 assignment |
CG1718 | 2001-01-01 | Release 2 assignment |
CG1685 | 2003-01-01 | Sim4 clustering to Release 3 |
pen | 2008-04-29 | Release 5.5 accounting |
pen | 2008-08-15 | Release 5.9 accounting |
pen | 2008-12-18 | 5.12 accounting |
2368 bp (2368 high quality bases) assembled on 2000-02-14
GenBank Submission: AF132165
> LD21304.complete AGCACGTGTAGTTCGCTTTTTTGGCAAAAACATTTGCTGTTATTTAGTTG TAGTGTCCAAGAAAACGCAGCAAAGATGGTTAGCTCGGAGCCGAAAGGAC CTGCTAACGTGGCCAACACGGCCTCGCCCCTCAAGGCCCATGAATCGTCC GGCAAGCGCGCCAACGGACAGAAGTTTAAGCCCGGTGGAGCAGGAGGCGC CAGGAAGTTCGACAAATTCGGCGGAGGAGCAGGCAAGTCGTTTGTAAAGC CAGGCGCTGGTGGTGCCAAGAAGTTCGACAAGTCTGGGCCCGGTGGCTTC AAGAAGTTTGACAAATCCGGAGCCACCGGCGACAAGAGGCTTGGTGGCAA CAAGTTCCGCGGAAAACCACAAACACAGCCACAGGCGCCGGCGGAGGGCG AGAAACAGGACTGGAACAAGTTCAAGAAGGAGAAGAAGGACCTCAAGCTG AAGCGCAAGAGTGCCAAGGACACCTACGAGATCAGCAAGGAGGCCAACCA GATCCACGAGAAGTTGCGATGCCGCCGAACGGAGAACAAGGACAAGCTGG TGGAGCAGATATACAAGGTGCTCAACGTGGGCGACACTATTTCAAAGGTG GTGAAGGCCCACGACACCGCCCGCGTGATCCAGAGCATGCTAAAGTACGC GTCGCCAGCTCTGCGGGCCGAGATCTCTGAGAAGCTGCTTCCCTTCACCG TGGAGATGTGCCAGTCGAAATACGCCCAGTTCTGCGTGCAACGGATGCTC AAGTACGGTGCGCCAGCCACCAAAGCCAAGCTGGTGGACAGCCTGTACGG ACATATAGTGCGTTTGGCCGGACACAGCATCGGCAGTGGGCTGCTGGATT CGATGTATCAGAGCGCCACACCCAATCAGCGCATCTATATGCGCCAGGAG TTCTACGGCGATCTGTACCGGAAGGCCAAGGATTCGAATGTGAAGACTCT GAGCGACACCTATAAGGAGGCCACGAACATGAAGGCCTCCATTTTGGGGT CGGTTAAAGCAAACCTGGATCATGTGGCCAACAAGCAGCTGGTGGACAGT GCGCTGGTGCACGCCGTGATGCTGGAGTACCTGCGCGCCTGCGACGAAGA TGAGGAGAAGCTGGAGGAGACGGTCACTGCGTTTGCGGCTCTAGTGCCTC ACATGCTGTCCACCAAGGAGGGCAGCGAGGCGGCTGTTATATGCTTCTAC AAGTCGACGCCCAAGAATCGCAGAGCCATTATCAAGAATATCAAGGAGCA CCTGCTAAAGATCGCCAACCATGAGCACGGCCACGTGTTCCTCATCTCGC TGCTAAACGCACTGGACGACACTAAGGCGACCAAGAAGGCAATTTACGAT CACCTACACGGAGATCTAAAGGCGCTAATGAGCAGCCCGTACGGCCGACG AGTGATTCAATGGCTGGTGGCTCCGGGTGATACGACATGCTTCCATCCAG AGTTCATTCGCACGGTGGAGGAGGGTCTAGCCTTTGGAAAAAAGGAGAAG GAGCTGCGTCGCAAGGAGATCCTTGAGCAGATAGAGGCGCCGATTGCACA GTCCATCGCCGAGGATGCCGCCTTTTGGCTGTCCAACAGCCACATCGGCC TGGTCACCGGCGATATTCTTAATCACATTCAAGGCGAGTCCTATGAGAAG GCTGCTTCGGCCCTTGCCCAAGTCGTCGTCCAACCGGAGTGGCGCATTTC AGCAGACGCCGCCGGTCCGCAGCCGCAGGATAAGAAGAAGCCTCACAATG ACGTGGAGGCCATTATAGCCCAGGCCACCAAACAGCGCAGAAAACTGCTT TATGTCGAGAGCAGCAGCGACGACGAAGATGAAGATGAAGATGAAGATGA GGAGAGCGACGATGAAGGAGACGAGAAGGAGCAGAAGGAGGCGGCCGCAG ATGATGCCGAACCCAAGGTGAAGAAAGCCAAAAAGGAGCCCAAAAAGCCA AAGGCAAAGGAGGAGGAGCCGGCGGCTCCGTTGGTCTCCGGAATCGAGGA GGCCGGCATGCACATTGTATTGAAGAAGATACTCAAGAACGATGGCAAGC GAGAGGGCACCCCGTTCAGCCAACAGCTACTCCAAAACTTGTCCTCCGAT GTGCTGAAAGCCTGGCTGGGCGTCAACCGGGCCTGTTTTGTCCTGCTCAA GCTGGTGGAGGAGTGTCCCGCACTGCTGGACGACTGCAAGAAAGCCATCG CGGCGGAGAGGAGCCTTAGCCAGATACTCGCGGACCGTAAGACGCCCGGA GCCAAGCTACTGGCCGCCAAACTGGACATTGGCAAATGAGAAACGCTTCT AGCCTAGACAAGACCTAACATTTTAAAATACAATAAATAATTCTATATTG AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21213159..21213863 | 1225..521 | 3525 | 100 | Minus |
chrX | 22417052 | chrX | 21214464..21214984 | 521..1 | 2605 | 100 | Minus |
chrX | 22417052 | chrX | 21212115..21212590 | 2103..1628 | 2380 | 100 | Minus |
chrX | 22417052 | chrX | 21212689..21213091 | 1627..1225 | 2015 | 100 | Minus |
chrX | 22417052 | chrX | 21211661..21211908 | 2350..2103 | 1240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21348001..21348705 | 1225..521 | 3525 | 100 | Minus |
X | 23542271 | X | 21349306..21349826 | 521..1 | 2605 | 100 | Minus |
X | 23542271 | X | 21346957..21347432 | 2103..1628 | 2380 | 100 | Minus |
X | 23542271 | X | 21347531..21347933 | 1627..1225 | 2015 | 100 | Minus |
X | 23542271 | X | 21346500..21346750 | 2353..2103 | 1255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21333093..21333797 | 1225..521 | 3525 | 100 | Minus |
X | 23527363 | X | 21334398..21334918 | 521..1 | 2605 | 100 | Minus |
X | 23527363 | X | 21332049..21332524 | 2103..1628 | 2380 | 100 | Minus |
X | 23527363 | X | 21332623..21333025 | 1627..1225 | 2015 | 100 | Minus |
X | 23527363 | X | 21331592..21331842 | 2353..2103 | 1255 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21211661..21211907 | 2104..2350 | 100 | <- | Minus |
chrX | 21212115..21212590 | 1628..2103 | 100 | <- | Minus |
chrX | 21212689..21213091 | 1225..1627 | 100 | <- | Minus |
chrX | 21213160..21213862 | 522..1224 | 100 | <- | Minus |
chrX | 21214464..21214984 | 1..521 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 1..2214 | 76..2289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 1..2214 | 76..2289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 1..2214 | 76..2289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 1..2214 | 76..2289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 1..2214 | 76..2289 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 14..2363 | 1..2350 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 14..2363 | 1..2350 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 18..2367 | 1..2350 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 14..2363 | 1..2350 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pen-RA | 18..2367 | 1..2350 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21346503..21346749 | 2104..2350 | 100 | <- | Minus |
X | 21346957..21347432 | 1628..2103 | 100 | <- | Minus |
X | 21347531..21347933 | 1225..1627 | 100 | <- | Minus |
X | 21348002..21348704 | 522..1224 | 100 | <- | Minus |
X | 21349306..21349826 | 1..521 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21346503..21346749 | 2104..2350 | 100 | <- | Minus |
X | 21346957..21347432 | 1628..2103 | 100 | <- | Minus |
X | 21347531..21347933 | 1225..1627 | 100 | <- | Minus |
X | 21348002..21348704 | 522..1224 | 100 | <- | Minus |
X | 21349306..21349826 | 1..521 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21346503..21346749 | 2104..2350 | 100 | <- | Minus |
X | 21346957..21347432 | 1628..2103 | 100 | <- | Minus |
X | 21347531..21347933 | 1225..1627 | 100 | <- | Minus |
X | 21348002..21348704 | 522..1224 | 100 | <- | Minus |
X | 21349306..21349826 | 1..521 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21217530..21217776 | 2104..2350 | 100 | <- | Minus |
arm_X | 21217984..21218459 | 1628..2103 | 100 | <- | Minus |
arm_X | 21218558..21218960 | 1225..1627 | 100 | <- | Minus |
arm_X | 21219029..21219731 | 522..1224 | 100 | <- | Minus |
arm_X | 21220333..21220853 | 1..521 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21332049..21332524 | 1628..2103 | 100 | <- | Minus |
X | 21331595..21331841 | 2104..2350 | 100 | <- | Minus |
X | 21332623..21333025 | 1225..1627 | 100 | <- | Minus |
X | 21333094..21333796 | 522..1224 | 100 | <- | Minus |
X | 21334398..21334918 | 1..521 | 100 | Minus |
Translation from 0 to 2288
> LD21304.hyp STCSSLFWQKHLLLFSCSVQENAAKMVSSEPKGPANVANTASPLKAHESS GKRANGQKFKPGGAGGARKFDKFGGGAGKSFVKPGAGGAKKFDKSGPGGF KKFDKSGATGDKRLGGNKFRGKPQTQPQAPAEGEKQDWNKFKKEKKDLKL KRKSAKDTYEISKEANQIHEKLRCRRTENKDKLVEQIYKVLNVGDTISKV VKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRML KYGAPATKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQE FYGDLYRKAKDSNVKTLSDTYKEATNMKASILGSVKANLDHVANKQLVDS ALVHAVMLEYLRACDEDEEKLEETVTAFAALVPHMLSTKEGSEAAVICFY KSTPKNRRAIIKNIKEHLLKIANHEHGHVFLISLLNALDDTKATKKAIYD HLHGDLKALMSSPYGRRVIQWLVAPGDTTCFHPEFIRTVEEGLAFGKKEK ELRRKEILEQIEAPIAQSIAEDAAFWLSNSHIGLVTGDILNHIQGESYEK AASALAQVVVQPEWRISADAAGPQPQDKKKPHNDVEAIIAQATKQRRKLL YVESSSDDEDEDEDEDEESDDEGDEKEQKEAAADDAEPKVKKAKKEPKKP KAKEEEPAAPLVSGIEEAGMHIVLKKILKNDGKREGTPFSQQLLQNLSSD VLKAWLGVNRACFVLLKLVEECPALLDDCKKAIAAERSLSQILADRKTPG AKLLAAKLDIGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pen-PA | 737 | CG1685-PA | 1..737 | 26..762 | 3777 | 100 | Plus |
Translation from 75 to 2288
> LD21304.pep MVSSEPKGPANVANTASPLKAHESSGKRANGQKFKPGGAGGARKFDKFGG GAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKRLGGNKFRGKPQT QPQAPAEGEKQDWNKFKKEKKDLKLKRKSAKDTYEISKEANQIHEKLRCR RTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEI SEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGH SIGSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSNVKTLSDTYKEAT NMKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEETV TAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHE HGHVFLISLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAP GDTTCFHPEFIRTVEEGLAFGKKEKELRRKEILEQIEAPIAQSIAEDAAF WLSNSHIGLVTGDILNHIQGESYEKAASALAQVVVQPEWRISADAAGPQP QDKKKPHNDVEAIIAQATKQRRKLLYVESSSDDEDEDEDEDEESDDEGDE KEQKEAAADDAEPKVKKAKKEPKKPKAKEEEPAAPLVSGIEEAGMHIVLK KILKNDGKREGTPFSQQLLQNLSSDVLKAWLGVNRACFVLLKLVEECPAL LDDCKKAIAAERSLSQILADRKTPGAKLLAAKLDIGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22393-PA | 711 | GF22393-PA | 1..708 | 1..737 | 2490 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17542-PA | 728 | GG17542-PA | 1..727 | 1..736 | 3207 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24934-PA | 674 | GH24934-PA | 23..672 | 67..735 | 2186 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
peng-PA | 737 | CG1685-PA | 1..737 | 1..737 | 3777 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14891-PA | 679 | GI14891-PA | 32..677 | 110..733 | 1792 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14987-PA | 683 | GL14987-PA | 16..683 | 54..737 | 2259 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14176-PA | 683 | GA14176-PA | 16..683 | 54..737 | 2417 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22626-PA | 740 | GM22626-PA | 1..740 | 1..737 | 3414 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15499-PA | 739 | GD15499-PA | 1..739 | 1..737 | 3412 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15324-PA | 672 | GJ15324-PA | 40..670 | 75..733 | 2115 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25048-PA | 593 | GK25048-PA | 64..539 | 92..565 | 1980 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15301-PA | 741 | GE15301-PA | 1..741 | 1..737 | 3300 | 92.5 | Plus |