Clone LD21304 Report

Search the DGRC for LD21304

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:213
Well:4
Vector:pOT2
Associated Gene/Transcriptpen-RA
Protein status:LD21304.pep: gold
Preliminary Size:2525
Sequenced Size:2368

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1685 2000-02-14 Blastp of sequenced clone
CG1704 2001-01-01 Release 2 assignment
CG1696 2001-01-01 Release 2 assignment
CG1801 2001-01-01 Release 2 assignment
CG1693 2001-01-01 Release 2 assignment
CG1718 2001-01-01 Release 2 assignment
CG1685 2003-01-01 Sim4 clustering to Release 3
pen 2008-04-29 Release 5.5 accounting
pen 2008-08-15 Release 5.9 accounting
pen 2008-12-18 5.12 accounting

Clone Sequence Records

LD21304.complete Sequence

2368 bp (2368 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132165

> LD21304.complete
AGCACGTGTAGTTCGCTTTTTTGGCAAAAACATTTGCTGTTATTTAGTTG
TAGTGTCCAAGAAAACGCAGCAAAGATGGTTAGCTCGGAGCCGAAAGGAC
CTGCTAACGTGGCCAACACGGCCTCGCCCCTCAAGGCCCATGAATCGTCC
GGCAAGCGCGCCAACGGACAGAAGTTTAAGCCCGGTGGAGCAGGAGGCGC
CAGGAAGTTCGACAAATTCGGCGGAGGAGCAGGCAAGTCGTTTGTAAAGC
CAGGCGCTGGTGGTGCCAAGAAGTTCGACAAGTCTGGGCCCGGTGGCTTC
AAGAAGTTTGACAAATCCGGAGCCACCGGCGACAAGAGGCTTGGTGGCAA
CAAGTTCCGCGGAAAACCACAAACACAGCCACAGGCGCCGGCGGAGGGCG
AGAAACAGGACTGGAACAAGTTCAAGAAGGAGAAGAAGGACCTCAAGCTG
AAGCGCAAGAGTGCCAAGGACACCTACGAGATCAGCAAGGAGGCCAACCA
GATCCACGAGAAGTTGCGATGCCGCCGAACGGAGAACAAGGACAAGCTGG
TGGAGCAGATATACAAGGTGCTCAACGTGGGCGACACTATTTCAAAGGTG
GTGAAGGCCCACGACACCGCCCGCGTGATCCAGAGCATGCTAAAGTACGC
GTCGCCAGCTCTGCGGGCCGAGATCTCTGAGAAGCTGCTTCCCTTCACCG
TGGAGATGTGCCAGTCGAAATACGCCCAGTTCTGCGTGCAACGGATGCTC
AAGTACGGTGCGCCAGCCACCAAAGCCAAGCTGGTGGACAGCCTGTACGG
ACATATAGTGCGTTTGGCCGGACACAGCATCGGCAGTGGGCTGCTGGATT
CGATGTATCAGAGCGCCACACCCAATCAGCGCATCTATATGCGCCAGGAG
TTCTACGGCGATCTGTACCGGAAGGCCAAGGATTCGAATGTGAAGACTCT
GAGCGACACCTATAAGGAGGCCACGAACATGAAGGCCTCCATTTTGGGGT
CGGTTAAAGCAAACCTGGATCATGTGGCCAACAAGCAGCTGGTGGACAGT
GCGCTGGTGCACGCCGTGATGCTGGAGTACCTGCGCGCCTGCGACGAAGA
TGAGGAGAAGCTGGAGGAGACGGTCACTGCGTTTGCGGCTCTAGTGCCTC
ACATGCTGTCCACCAAGGAGGGCAGCGAGGCGGCTGTTATATGCTTCTAC
AAGTCGACGCCCAAGAATCGCAGAGCCATTATCAAGAATATCAAGGAGCA
CCTGCTAAAGATCGCCAACCATGAGCACGGCCACGTGTTCCTCATCTCGC
TGCTAAACGCACTGGACGACACTAAGGCGACCAAGAAGGCAATTTACGAT
CACCTACACGGAGATCTAAAGGCGCTAATGAGCAGCCCGTACGGCCGACG
AGTGATTCAATGGCTGGTGGCTCCGGGTGATACGACATGCTTCCATCCAG
AGTTCATTCGCACGGTGGAGGAGGGTCTAGCCTTTGGAAAAAAGGAGAAG
GAGCTGCGTCGCAAGGAGATCCTTGAGCAGATAGAGGCGCCGATTGCACA
GTCCATCGCCGAGGATGCCGCCTTTTGGCTGTCCAACAGCCACATCGGCC
TGGTCACCGGCGATATTCTTAATCACATTCAAGGCGAGTCCTATGAGAAG
GCTGCTTCGGCCCTTGCCCAAGTCGTCGTCCAACCGGAGTGGCGCATTTC
AGCAGACGCCGCCGGTCCGCAGCCGCAGGATAAGAAGAAGCCTCACAATG
ACGTGGAGGCCATTATAGCCCAGGCCACCAAACAGCGCAGAAAACTGCTT
TATGTCGAGAGCAGCAGCGACGACGAAGATGAAGATGAAGATGAAGATGA
GGAGAGCGACGATGAAGGAGACGAGAAGGAGCAGAAGGAGGCGGCCGCAG
ATGATGCCGAACCCAAGGTGAAGAAAGCCAAAAAGGAGCCCAAAAAGCCA
AAGGCAAAGGAGGAGGAGCCGGCGGCTCCGTTGGTCTCCGGAATCGAGGA
GGCCGGCATGCACATTGTATTGAAGAAGATACTCAAGAACGATGGCAAGC
GAGAGGGCACCCCGTTCAGCCAACAGCTACTCCAAAACTTGTCCTCCGAT
GTGCTGAAAGCCTGGCTGGGCGTCAACCGGGCCTGTTTTGTCCTGCTCAA
GCTGGTGGAGGAGTGTCCCGCACTGCTGGACGACTGCAAGAAAGCCATCG
CGGCGGAGAGGAGCCTTAGCCAGATACTCGCGGACCGTAAGACGCCCGGA
GCCAAGCTACTGGCCGCCAAACTGGACATTGGCAAATGAGAAACGCTTCT
AGCCTAGACAAGACCTAACATTTTAAAATACAATAAATAATTCTATATTG
AAAAAAAAAAAAAAAAAA

LD21304.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
penguin-RA 2442 penguin-RA 71..2423 1..2353 11765 100 Plus
dod-RA 1113 dod-RA 749..999 2353..2103 1255 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21213159..21213863 1225..521 3525 100 Minus
chrX 22417052 chrX 21214464..21214984 521..1 2605 100 Minus
chrX 22417052 chrX 21212115..21212590 2103..1628 2380 100 Minus
chrX 22417052 chrX 21212689..21213091 1627..1225 2015 100 Minus
chrX 22417052 chrX 21211661..21211908 2350..2103 1240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21348001..21348705 1225..521 3525 100 Minus
X 23542271 X 21349306..21349826 521..1 2605 100 Minus
X 23542271 X 21346957..21347432 2103..1628 2380 100 Minus
X 23542271 X 21347531..21347933 1627..1225 2015 100 Minus
X 23542271 X 21346500..21346750 2353..2103 1255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21333093..21333797 1225..521 3525 100 Minus
X 23527363 X 21334398..21334918 521..1 2605 100 Minus
X 23527363 X 21332049..21332524 2103..1628 2380 100 Minus
X 23527363 X 21332623..21333025 1627..1225 2015 100 Minus
X 23527363 X 21331592..21331842 2353..2103 1255 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:46:53 has no hits.

LD21304.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:47:40 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21211661..21211907 2104..2350 100 <- Minus
chrX 21212115..21212590 1628..2103 100 <- Minus
chrX 21212689..21213091 1225..1627 100 <- Minus
chrX 21213160..21213862 522..1224 100 <- Minus
chrX 21214464..21214984 1..521 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:45 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 1..2214 76..2289 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:16 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 1..2214 76..2289 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:50:29 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 1..2214 76..2289 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:14 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 1..2214 76..2289 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:16 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 1..2214 76..2289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:31 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 14..2363 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:15 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 14..2363 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:29 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 18..2367 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:14 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 14..2363 1..2350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:16 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
pen-RA 18..2367 1..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:40 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
X 21346503..21346749 2104..2350 100 <- Minus
X 21346957..21347432 1628..2103 100 <- Minus
X 21347531..21347933 1225..1627 100 <- Minus
X 21348002..21348704 522..1224 100 <- Minus
X 21349306..21349826 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:40 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
X 21346503..21346749 2104..2350 100 <- Minus
X 21346957..21347432 1628..2103 100 <- Minus
X 21347531..21347933 1225..1627 100 <- Minus
X 21348002..21348704 522..1224 100 <- Minus
X 21349306..21349826 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:47:40 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
X 21346503..21346749 2104..2350 100 <- Minus
X 21346957..21347432 1628..2103 100 <- Minus
X 21347531..21347933 1225..1627 100 <- Minus
X 21348002..21348704 522..1224 100 <- Minus
X 21349306..21349826 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:29 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21217530..21217776 2104..2350 100 <- Minus
arm_X 21217984..21218459 1628..2103 100 <- Minus
arm_X 21218558..21218960 1225..1627 100 <- Minus
arm_X 21219029..21219731 522..1224 100 <- Minus
arm_X 21220333..21220853 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:41 Download gff for LD21304.complete
Subject Subject Range Query Range Percent Splice Strand
X 21332049..21332524 1628..2103 100 <- Minus
X 21331595..21331841 2104..2350 100 <- Minus
X 21332623..21333025 1225..1627 100 <- Minus
X 21333094..21333796 522..1224 100 <- Minus
X 21334398..21334918 1..521 100   Minus

LD21304.hyp Sequence

Translation from 0 to 2288

> LD21304.hyp
STCSSLFWQKHLLLFSCSVQENAAKMVSSEPKGPANVANTASPLKAHESS
GKRANGQKFKPGGAGGARKFDKFGGGAGKSFVKPGAGGAKKFDKSGPGGF
KKFDKSGATGDKRLGGNKFRGKPQTQPQAPAEGEKQDWNKFKKEKKDLKL
KRKSAKDTYEISKEANQIHEKLRCRRTENKDKLVEQIYKVLNVGDTISKV
VKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRML
KYGAPATKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQE
FYGDLYRKAKDSNVKTLSDTYKEATNMKASILGSVKANLDHVANKQLVDS
ALVHAVMLEYLRACDEDEEKLEETVTAFAALVPHMLSTKEGSEAAVICFY
KSTPKNRRAIIKNIKEHLLKIANHEHGHVFLISLLNALDDTKATKKAIYD
HLHGDLKALMSSPYGRRVIQWLVAPGDTTCFHPEFIRTVEEGLAFGKKEK
ELRRKEILEQIEAPIAQSIAEDAAFWLSNSHIGLVTGDILNHIQGESYEK
AASALAQVVVQPEWRISADAAGPQPQDKKKPHNDVEAIIAQATKQRRKLL
YVESSSDDEDEDEDEDEESDDEGDEKEQKEAAADDAEPKVKKAKKEPKKP
KAKEEEPAAPLVSGIEEAGMHIVLKKILKNDGKREGTPFSQQLLQNLSSD
VLKAWLGVNRACFVLLKLVEECPALLDDCKKAIAAERSLSQILADRKTPG
AKLLAAKLDIGK*

LD21304.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
pen-PA 737 CG1685-PA 1..737 26..762 3777 100 Plus

LD21304.pep Sequence

Translation from 75 to 2288

> LD21304.pep
MVSSEPKGPANVANTASPLKAHESSGKRANGQKFKPGGAGGARKFDKFGG
GAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKRLGGNKFRGKPQT
QPQAPAEGEKQDWNKFKKEKKDLKLKRKSAKDTYEISKEANQIHEKLRCR
RTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEI
SEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGH
SIGSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSNVKTLSDTYKEAT
NMKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEETV
TAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHE
HGHVFLISLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAP
GDTTCFHPEFIRTVEEGLAFGKKEKELRRKEILEQIEAPIAQSIAEDAAF
WLSNSHIGLVTGDILNHIQGESYEKAASALAQVVVQPEWRISADAAGPQP
QDKKKPHNDVEAIIAQATKQRRKLLYVESSSDDEDEDEDEDEESDDEGDE
KEQKEAAADDAEPKVKKAKKEPKKPKAKEEEPAAPLVSGIEEAGMHIVLK
KILKNDGKREGTPFSQQLLQNLSSDVLKAWLGVNRACFVLLKLVEECPAL
LDDCKKAIAAERSLSQILADRKTPGAKLLAAKLDIGK*

LD21304.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22393-PA 711 GF22393-PA 1..708 1..737 2490 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17542-PA 728 GG17542-PA 1..727 1..736 3207 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24934-PA 674 GH24934-PA 23..672 67..735 2186 63.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
peng-PA 737 CG1685-PA 1..737 1..737 3777 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14891-PA 679 GI14891-PA 32..677 110..733 1792 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14987-PA 683 GL14987-PA 16..683 54..737 2259 70.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14176-PA 683 GA14176-PA 16..683 54..737 2417 74.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22626-PA 740 GM22626-PA 1..740 1..737 3414 93.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15499-PA 739 GD15499-PA 1..739 1..737 3412 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15324-PA 672 GJ15324-PA 40..670 75..733 2115 63.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25048-PA 593 GK25048-PA 64..539 92..565 1980 78.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15301-PA 741 GE15301-PA 1..741 1..737 3300 92.5 Plus