Clone LD21309 Report

Search the DGRC for LD21309

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:213
Well:9
Vector:pOT2
Associated Gene/Transcriptkra-RB
Protein status:LD21309.pep: gold
Preliminary Size:2200
Sequenced Size:2020

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2922 2001-01-01 Release 2 assignment
CG2922 2001-09-19 Blastp of sequenced clone
CG2922 2003-01-01 Sim4 clustering to Release 3
exba 2008-04-29 Release 5.5 accounting
exba 2008-08-15 Release 5.9 accounting
exba 2008-12-18 5.12 accounting

Clone Sequence Records

LD21309.complete Sequence

2020 bp (2020 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058505

> LD21309.complete
TTTAACAAAGTGGTGCGAGCAGAGGGGCGCTGGATTCGAGGCAAACAACA
CATATACCTAGTAACCGATTGTGATAGCTGTTAAAAATAGAATTCCGGAC
GTAGTCTGAGCAAAATTGTTAACGTTTATTTTGAAGGCATAAAAGTAAAT
TCCGTTACAAAAAATTATATTTTCTATTTGCTCTCCCCTTTTCTTTGTTG
TTGTGTGTGTGCGTGCGTGTCAATTTTACCGTGCAAAAGCTCGCTCATAA
GAAAAGAGAGGTAAGAAAAGAAGGGATCTGCCATCTGTCTCTTTGTTTTT
CGTCGACTCGAGTGAGAAGCATTAACCAGCCAGCGCTTCGTGAGGTTAAA
TTAAATTACATATTCTCGCACGTTCGTTAGTTGTGAAAAAGCAACAGGCA
CACACACACACACATACACACTACACTCGCACACGACTGATTTCAATTGA
TTGCAAGGACACGCGGAAGCGGCAAACACAGGGCCAGACTTAATATCCTT
GGGTGAAAGCCAATTTATTGTATGAGTCAAAAAACTGAAAGACCAGTGCT
ATCGGGTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATG
ACCCAACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAA
GGCGACCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCT
CGACTATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAG
GTCTACTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGC
ACAAGCTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAA
CCATGAGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGA
AAATGTTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTT
ACTCCTAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGT
CAACGGTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACC
TAATCAAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACG
TTCAAGCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGG
TGGACTGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTG
AGGAATATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTC
AAGCTACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCA
GGCGCTCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCT
CAGACATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATA
ATTGTTATTATTTGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAA
GGAGGAGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCC
CACTGTTGCAGGCTTTCGCCTCGACCGACCGTTCGGAATTGGCCCTAATC
TTGAAGGTGCAGGAATTCTGCTACGAGAACATGAACTTCATGAAGGCCTT
CCAGAAAATCATTTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGA
TCATCTTGCGCTGGTACAAGGAGGGCCACTCAAACAAGGGCAAAATGCAT
TTCCTTGAACAAATGCGAAAGTTTGTCGAATGGCTTCAGTCAGCCGAAGA
AGAATCCGAATCTGAGGACGAACAAAAGAATGGCGAGTAAGAACTTGGTT
GATGGCTAAATGAGGATGAACACAAACGGAGCCGCCCTTTAGCATCCCCA
TCCAAAAATTCGAAACCAGCACCTGCAACAGCCAGTCGAACTATATATAA
AACTCACCCCTATGAATTAATGTCATTTTGAAAACTCCACCTATATAAAA
CTCAAAAATTCCAACAAATAAAGGAGAGAGTAAAAAAAACATGCTAGAAA
CTAAAAAAAAAAAAAAAAAA

LD21309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
exba.t 2765 exba.t 208..2212 1..2005 10025 100 Plus
exba.k 2808 exba.k 208..2212 1..2005 10025 100 Plus
exba-RD 2213 exba-RD 208..2212 1..2005 10025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1425697..1426206 510..1 2550 100 Minus
chr3R 27901430 chr3R 1422520..1422862 1752..1410 1715 100 Minus
chr3R 27901430 chr3R 1421532..1421783 2002..1751 1260 100 Minus
chr3R 27901430 chr3R 1424775..1425023 759..511 1245 100 Minus
chr3R 27901430 chr3R 1422931..1423174 1409..1166 1220 100 Minus
chr3R 27901430 chr3R 1423431..1423598 1165..998 840 100 Minus
chr3R 27901430 chr3R 1423863..1424004 999..858 710 100 Minus
chr3R 27901430 chr3R 1424601..1424705 862..758 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5600038..5600547 510..1 2550 100 Minus
3R 32079331 3R 5596861..5597203 1752..1410 1715 100 Minus
3R 32079331 3R 5595870..5596124 2005..1751 1275 100 Minus
3R 32079331 3R 5599116..5599364 759..511 1245 100 Minus
3R 32079331 3R 5597272..5597515 1409..1166 1220 100 Minus
3R 32079331 3R 5597772..5597939 1165..998 840 100 Minus
3R 32079331 3R 5598204..5598345 999..858 710 100 Minus
3R 32079331 3R 5598942..5599046 862..758 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5340869..5341378 510..1 2550 100 Minus
3R 31820162 3R 5337692..5338034 1752..1410 1715 100 Minus
3R 31820162 3R 5336701..5336955 2005..1751 1275 100 Minus
3R 31820162 3R 5339947..5340195 759..511 1245 100 Minus
3R 31820162 3R 5338103..5338346 1409..1166 1220 100 Minus
3R 31820162 3R 5338603..5338770 1165..998 840 100 Minus
3R 31820162 3R 5339035..5339176 999..858 710 100 Minus
3R 31820162 3R 5339773..5339877 862..758 525 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:00:27 has no hits.

LD21309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:01:37 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1421532..1421781 1753..2002 100 <- Minus
chr3R 1422520..1422862 1410..1752 100 <- Minus
chr3R 1422931..1423174 1166..1409 100 <- Minus
chr3R 1423431..1423596 1000..1165 100 <- Minus
chr3R 1423863..1424001 861..999 100 <- Minus
chr3R 1424603..1424703 760..860 100 <- Minus
chr3R 1424775..1425023 511..759 100 <- Minus
chr3R 1425697..1426206 1..510 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:47 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 1..1269 522..1790 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:24 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 1..1269 522..1790 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:58 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 1..1269 522..1790 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:33 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 1..1269 522..1790 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:33 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
kra-RD 1..1269 522..1790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:56 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 20..2021 1..2002 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:24 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 20..2021 1..2002 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:58 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 25..2026 1..2002 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:33 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 20..2021 1..2002 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:33 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
kra-RD 25..2026 1..2002 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:37 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5595873..5596122 1753..2002 100 <- Minus
3R 5596861..5597203 1410..1752 100 <- Minus
3R 5597272..5597515 1166..1409 100 <- Minus
3R 5597772..5597937 1000..1165 100 <- Minus
3R 5598204..5598342 861..999 100 <- Minus
3R 5598944..5599044 760..860 100 <- Minus
3R 5599116..5599364 511..759 100 <- Minus
3R 5600038..5600547 1..510 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:37 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5595873..5596122 1753..2002 100 <- Minus
3R 5596861..5597203 1410..1752 100 <- Minus
3R 5597272..5597515 1166..1409 100 <- Minus
3R 5597772..5597937 1000..1165 100 <- Minus
3R 5598204..5598342 861..999 100 <- Minus
3R 5598944..5599044 760..860 100 <- Minus
3R 5599116..5599364 511..759 100 <- Minus
3R 5600038..5600547 1..510 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:37 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5595873..5596122 1753..2002 100 <- Minus
3R 5596861..5597203 1410..1752 100 <- Minus
3R 5597272..5597515 1166..1409 100 <- Minus
3R 5597772..5597937 1000..1165 100 <- Minus
3R 5598204..5598342 861..999 100 <- Minus
3R 5598944..5599044 760..860 100 <- Minus
3R 5599116..5599364 511..759 100 <- Minus
3R 5600038..5600547 1..510 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:58 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1424838..1425086 511..759 100 <- Minus
arm_3R 1421595..1421844 1753..2002 100 <- Minus
arm_3R 1422583..1422925 1410..1752 100 <- Minus
arm_3R 1422994..1423237 1166..1409 100 <- Minus
arm_3R 1423494..1423659 1000..1165 100 <- Minus
arm_3R 1423926..1424064 861..999 100 <- Minus
arm_3R 1424666..1424766 760..860 100 <- Minus
arm_3R 1425760..1426269 1..510 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:43 Download gff for LD21309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5339947..5340195 511..759 100 <- Minus
3R 5340869..5341378 1..510 100   Minus
3R 5336704..5336953 1753..2002 100 <- Minus
3R 5337692..5338034 1410..1752 100 <- Minus
3R 5338103..5338346 1166..1409 100 <- Minus
3R 5338603..5338768 1000..1165 100 <- Minus
3R 5339035..5339173 861..999 100 <- Minus
3R 5339775..5339875 760..860 100 <- Minus

LD21309.hyp Sequence

Translation from 521 to 1789

> LD21309.hyp
MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS
KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD
APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK
LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI
AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA
SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST
IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC
YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK
FVEWLQSAEEESESEDEQKNGE*

LD21309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
kra-PE 422 CG2922-PE 1..422 1..422 2169 100 Plus
kra-PB 422 CG2922-PB 1..422 1..422 2169 100 Plus
kra-PD 422 CG2922-PD 1..422 1..422 2169 100 Plus
kra-PF 422 CG2922-PF 1..422 1..422 2169 100 Plus
kra-PC 422 CG2922-PC 1..422 1..422 2169 100 Plus

LD21309.pep Sequence

Translation from 521 to 1789

> LD21309.pep
MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS
KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD
APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK
LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI
AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA
SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST
IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC
YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK
FVEWLQSAEEESESEDEQKNGE*

LD21309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20763-PA 422 GF20763-PA 1..422 1..422 2171 96.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10932-PA 422 GG10932-PA 1..422 1..422 2229 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17376-PA 422 GH17376-PA 1..408 1..408 2037 95.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
kra-PE 422 CG2922-PE 1..422 1..422 2169 100 Plus
kra-PB 422 CG2922-PB 1..422 1..422 2169 100 Plus
kra-PD 422 CG2922-PD 1..422 1..422 2169 100 Plus
kra-PF 422 CG2922-PF 1..422 1..422 2169 100 Plus
kra-PC 422 CG2922-PC 1..422 1..422 2169 100 Plus
kra-PG 422 CG2922-PG 1..422 1..422 2169 100 Plus
kra-PA 422 CG2922-PA 1..422 1..422 2169 100 Plus
NAT1-PA 918 CG3845-PA 697..918 203..415 163 27.8 Plus
NAT1-PB 918 CG3845-PB 697..918 203..415 163 27.8 Plus
NAT1-PD 1488 CG3845-PD 1267..1488 203..415 163 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23920-PA 422 GI23920-PA 1..422 1..422 2045 95.7 Plus
Dmoj\GI16278-PA 446 GI16278-PA 6..417 9..416 779 37.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22291-PA 422 GL22291-PA 1..422 1..422 2101 96.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15521-PB 422 GA15521-PB 1..422 1..422 2095 96 Plus
Dpse\GA15521-PA 422 GA15521-PA 1..422 1..422 2095 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10614-PA 422 GM10614-PA 1..422 1..422 2231 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19602-PA 162 GD19602-PA 1..159 1..159 844 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24012-PA 422 GJ24012-PA 1..422 1..422 2032 95.5 Plus
Dvir\GJ16515-PA 452 GJ16515-PA 6..415 9..416 784 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22654-PA 422 GK22654-PA 1..422 1..422 2143 95 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24159-PA 422 GE24159-PA 1..422 1..422 2226 99.3 Plus