BDGP Sequence Production Resources |
Search the DGRC for LD21309
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 213 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | kra-RB |
Protein status: | LD21309.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 2020 |
Gene | Date | Evidence |
---|---|---|
CG2922 | 2001-01-01 | Release 2 assignment |
CG2922 | 2001-09-19 | Blastp of sequenced clone |
CG2922 | 2003-01-01 | Sim4 clustering to Release 3 |
exba | 2008-04-29 | Release 5.5 accounting |
exba | 2008-08-15 | Release 5.9 accounting |
exba | 2008-12-18 | 5.12 accounting |
2020 bp (2020 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058505
> LD21309.complete TTTAACAAAGTGGTGCGAGCAGAGGGGCGCTGGATTCGAGGCAAACAACA CATATACCTAGTAACCGATTGTGATAGCTGTTAAAAATAGAATTCCGGAC GTAGTCTGAGCAAAATTGTTAACGTTTATTTTGAAGGCATAAAAGTAAAT TCCGTTACAAAAAATTATATTTTCTATTTGCTCTCCCCTTTTCTTTGTTG TTGTGTGTGTGCGTGCGTGTCAATTTTACCGTGCAAAAGCTCGCTCATAA GAAAAGAGAGGTAAGAAAAGAAGGGATCTGCCATCTGTCTCTTTGTTTTT CGTCGACTCGAGTGAGAAGCATTAACCAGCCAGCGCTTCGTGAGGTTAAA TTAAATTACATATTCTCGCACGTTCGTTAGTTGTGAAAAAGCAACAGGCA CACACACACACACATACACACTACACTCGCACACGACTGATTTCAATTGA TTGCAAGGACACGCGGAAGCGGCAAACACAGGGCCAGACTTAATATCCTT GGGTGAAAGCCAATTTATTGTATGAGTCAAAAAACTGAAAGACCAGTGCT ATCGGGTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATG ACCCAACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAA GGCGACCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCT CGACTATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAG GTCTACTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGC ACAAGCTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAA CCATGAGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGA AAATGTTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTT ACTCCTAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGT CAACGGTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACC TAATCAAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACG TTCAAGCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGG TGGACTGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTG AGGAATATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTC AAGCTACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCA GGCGCTCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCT CAGACATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATA ATTGTTATTATTTGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAA GGAGGAGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCC CACTGTTGCAGGCTTTCGCCTCGACCGACCGTTCGGAATTGGCCCTAATC TTGAAGGTGCAGGAATTCTGCTACGAGAACATGAACTTCATGAAGGCCTT CCAGAAAATCATTTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGA TCATCTTGCGCTGGTACAAGGAGGGCCACTCAAACAAGGGCAAAATGCAT TTCCTTGAACAAATGCGAAAGTTTGTCGAATGGCTTCAGTCAGCCGAAGA AGAATCCGAATCTGAGGACGAACAAAAGAATGGCGAGTAAGAACTTGGTT GATGGCTAAATGAGGATGAACACAAACGGAGCCGCCCTTTAGCATCCCCA TCCAAAAATTCGAAACCAGCACCTGCAACAGCCAGTCGAACTATATATAA AACTCACCCCTATGAATTAATGTCATTTTGAAAACTCCACCTATATAAAA CTCAAAAATTCCAACAAATAAAGGAGAGAGTAAAAAAAACATGCTAGAAA CTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1425697..1426206 | 510..1 | 2550 | 100 | Minus |
chr3R | 27901430 | chr3R | 1422520..1422862 | 1752..1410 | 1715 | 100 | Minus |
chr3R | 27901430 | chr3R | 1421532..1421783 | 2002..1751 | 1260 | 100 | Minus |
chr3R | 27901430 | chr3R | 1424775..1425023 | 759..511 | 1245 | 100 | Minus |
chr3R | 27901430 | chr3R | 1422931..1423174 | 1409..1166 | 1220 | 100 | Minus |
chr3R | 27901430 | chr3R | 1423431..1423598 | 1165..998 | 840 | 100 | Minus |
chr3R | 27901430 | chr3R | 1423863..1424004 | 999..858 | 710 | 100 | Minus |
chr3R | 27901430 | chr3R | 1424601..1424705 | 862..758 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5600038..5600547 | 510..1 | 2550 | 100 | Minus |
3R | 32079331 | 3R | 5596861..5597203 | 1752..1410 | 1715 | 100 | Minus |
3R | 32079331 | 3R | 5595870..5596124 | 2005..1751 | 1275 | 100 | Minus |
3R | 32079331 | 3R | 5599116..5599364 | 759..511 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 5597272..5597515 | 1409..1166 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 5597772..5597939 | 1165..998 | 840 | 100 | Minus |
3R | 32079331 | 3R | 5598204..5598345 | 999..858 | 710 | 100 | Minus |
3R | 32079331 | 3R | 5598942..5599046 | 862..758 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5340869..5341378 | 510..1 | 2550 | 100 | Minus |
3R | 31820162 | 3R | 5337692..5338034 | 1752..1410 | 1715 | 100 | Minus |
3R | 31820162 | 3R | 5336701..5336955 | 2005..1751 | 1275 | 100 | Minus |
3R | 31820162 | 3R | 5339947..5340195 | 759..511 | 1245 | 100 | Minus |
3R | 31820162 | 3R | 5338103..5338346 | 1409..1166 | 1220 | 100 | Minus |
3R | 31820162 | 3R | 5338603..5338770 | 1165..998 | 840 | 100 | Minus |
3R | 31820162 | 3R | 5339035..5339176 | 999..858 | 710 | 100 | Minus |
3R | 31820162 | 3R | 5339773..5339877 | 862..758 | 525 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1421532..1421781 | 1753..2002 | 100 | <- | Minus |
chr3R | 1422520..1422862 | 1410..1752 | 100 | <- | Minus |
chr3R | 1422931..1423174 | 1166..1409 | 100 | <- | Minus |
chr3R | 1423431..1423596 | 1000..1165 | 100 | <- | Minus |
chr3R | 1423863..1424001 | 861..999 | 100 | <- | Minus |
chr3R | 1424603..1424703 | 760..860 | 100 | <- | Minus |
chr3R | 1424775..1425023 | 511..759 | 100 | <- | Minus |
chr3R | 1425697..1426206 | 1..510 | 92 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RC | 1..1269 | 522..1790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RC | 1..1269 | 522..1790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RD | 1..1269 | 522..1790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RC | 1..1269 | 522..1790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kra-RD | 1..1269 | 522..1790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RD | 20..2021 | 1..2002 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RD | 20..2021 | 1..2002 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RD | 25..2026 | 1..2002 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
exba-RD | 20..2021 | 1..2002 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kra-RD | 25..2026 | 1..2002 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5595873..5596122 | 1753..2002 | 100 | <- | Minus |
3R | 5596861..5597203 | 1410..1752 | 100 | <- | Minus |
3R | 5597272..5597515 | 1166..1409 | 100 | <- | Minus |
3R | 5597772..5597937 | 1000..1165 | 100 | <- | Minus |
3R | 5598204..5598342 | 861..999 | 100 | <- | Minus |
3R | 5598944..5599044 | 760..860 | 100 | <- | Minus |
3R | 5599116..5599364 | 511..759 | 100 | <- | Minus |
3R | 5600038..5600547 | 1..510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5595873..5596122 | 1753..2002 | 100 | <- | Minus |
3R | 5596861..5597203 | 1410..1752 | 100 | <- | Minus |
3R | 5597272..5597515 | 1166..1409 | 100 | <- | Minus |
3R | 5597772..5597937 | 1000..1165 | 100 | <- | Minus |
3R | 5598204..5598342 | 861..999 | 100 | <- | Minus |
3R | 5598944..5599044 | 760..860 | 100 | <- | Minus |
3R | 5599116..5599364 | 511..759 | 100 | <- | Minus |
3R | 5600038..5600547 | 1..510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5595873..5596122 | 1753..2002 | 100 | <- | Minus |
3R | 5596861..5597203 | 1410..1752 | 100 | <- | Minus |
3R | 5597272..5597515 | 1166..1409 | 100 | <- | Minus |
3R | 5597772..5597937 | 1000..1165 | 100 | <- | Minus |
3R | 5598204..5598342 | 861..999 | 100 | <- | Minus |
3R | 5598944..5599044 | 760..860 | 100 | <- | Minus |
3R | 5599116..5599364 | 511..759 | 100 | <- | Minus |
3R | 5600038..5600547 | 1..510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1424838..1425086 | 511..759 | 100 | <- | Minus |
arm_3R | 1421595..1421844 | 1753..2002 | 100 | <- | Minus |
arm_3R | 1422583..1422925 | 1410..1752 | 100 | <- | Minus |
arm_3R | 1422994..1423237 | 1166..1409 | 100 | <- | Minus |
arm_3R | 1423494..1423659 | 1000..1165 | 100 | <- | Minus |
arm_3R | 1423926..1424064 | 861..999 | 100 | <- | Minus |
arm_3R | 1424666..1424766 | 760..860 | 100 | <- | Minus |
arm_3R | 1425760..1426269 | 1..510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5339947..5340195 | 511..759 | 100 | <- | Minus |
3R | 5340869..5341378 | 1..510 | 100 | Minus | |
3R | 5336704..5336953 | 1753..2002 | 100 | <- | Minus |
3R | 5337692..5338034 | 1410..1752 | 100 | <- | Minus |
3R | 5338103..5338346 | 1166..1409 | 100 | <- | Minus |
3R | 5338603..5338768 | 1000..1165 | 100 | <- | Minus |
3R | 5339035..5339173 | 861..999 | 100 | <- | Minus |
3R | 5339775..5339875 | 760..860 | 100 | <- | Minus |
Translation from 521 to 1789
> LD21309.hyp MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK FVEWLQSAEEESESEDEQKNGE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
kra-PE | 422 | CG2922-PE | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PB | 422 | CG2922-PB | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PD | 422 | CG2922-PD | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PF | 422 | CG2922-PF | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PC | 422 | CG2922-PC | 1..422 | 1..422 | 2169 | 100 | Plus |
Translation from 521 to 1789
> LD21309.pep MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK FVEWLQSAEEESESEDEQKNGE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20763-PA | 422 | GF20763-PA | 1..422 | 1..422 | 2171 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10932-PA | 422 | GG10932-PA | 1..422 | 1..422 | 2229 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17376-PA | 422 | GH17376-PA | 1..408 | 1..408 | 2037 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
kra-PE | 422 | CG2922-PE | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PB | 422 | CG2922-PB | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PD | 422 | CG2922-PD | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PF | 422 | CG2922-PF | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PC | 422 | CG2922-PC | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PG | 422 | CG2922-PG | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PA | 422 | CG2922-PA | 1..422 | 1..422 | 2169 | 100 | Plus |
NAT1-PA | 918 | CG3845-PA | 697..918 | 203..415 | 163 | 27.8 | Plus |
NAT1-PB | 918 | CG3845-PB | 697..918 | 203..415 | 163 | 27.8 | Plus |
NAT1-PD | 1488 | CG3845-PD | 1267..1488 | 203..415 | 163 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23920-PA | 422 | GI23920-PA | 1..422 | 1..422 | 2045 | 95.7 | Plus |
Dmoj\GI16278-PA | 446 | GI16278-PA | 6..417 | 9..416 | 779 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22291-PA | 422 | GL22291-PA | 1..422 | 1..422 | 2101 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15521-PB | 422 | GA15521-PB | 1..422 | 1..422 | 2095 | 96 | Plus |
Dpse\GA15521-PA | 422 | GA15521-PA | 1..422 | 1..422 | 2095 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10614-PA | 422 | GM10614-PA | 1..422 | 1..422 | 2231 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19602-PA | 162 | GD19602-PA | 1..159 | 1..159 | 844 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24012-PA | 422 | GJ24012-PA | 1..422 | 1..422 | 2032 | 95.5 | Plus |
Dvir\GJ16515-PA | 452 | GJ16515-PA | 6..415 | 9..416 | 784 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22654-PA | 422 | GK22654-PA | 1..422 | 1..422 | 2143 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24159-PA | 422 | GE24159-PA | 1..422 | 1..422 | 2226 | 99.3 | Plus |