Clone LD21346 Report

Search the DGRC for LD21346

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:213
Well:46
Vector:pOT2
Associated Gene/TranscriptCG12708-RA
Protein status:LD21346.pep: gold
Preliminary Size:1300
Sequenced Size:1592

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12708 2003-01-01 Sim4 clustering to Release 3
CG12708 2003-01-14 Blastp of sequenced clone
CG12708 2008-04-29 Release 5.5 accounting
CG12708 2008-08-15 Release 5.9 accounting
CG12708 2008-12-18 5.12 accounting

Clone Sequence Records

LD21346.complete Sequence

1592 bp (1592 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003269

> LD21346.complete
GAACGCACGCAGTCGATCTTTGCCAGAAAAACGCGACGGTTGAAACGCAA
CACTTGGCAAAAAAAAAGCACTACATATACAAACTACCAAATAATCAATT
CTTAAAATAAATCCGCGAACCATTTATTTTATTTTTTTGCTGTTGGAAAT
AAATATCAGTGCCGAAAAAAATAAACTACTGAAAAAGCACCCACTACAAA
ACCGAAAAACTAAAACTTCAGACAAAGAAGATGCTCAAGTGGGCCGTCAA
CCAGCCACGACCCTCGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCA
GCGAGGCAGTCGGCTCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAA
CTCAAGAGGAAGTCGATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGAC
CTCCACGCCACTGCCGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCAC
TGCTCAAGGACCTCAGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCA
AGTGGCGCTAATGGGGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTT
CGCCTGCACACTGCCCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCA
TCATTCCTGGCTCCCTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGC
TACTTCGAGAAGCCGCGTTACCTGGAGCAGAAGCCACTACCACATCCGCA
TCCGCATCCAGCACCTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCC
AGATGGGCGATGTGACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGC
AACCGCAAGGTGCTGCCCAACGCCAGACAGCAACAGCACCAGCATCAGCA
CCGCCAGCCCAGGCAGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGG
TGCTCCGGAGCAGCCACGGACACGGGCACGGCCCCACCCAGACGCCATCG
CCCACCTACCGCCCCGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTG
GAAGTCGCCCTCGCGGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGC
GGGAGGTGCGCTCCCCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAG
CGGCATTCCCTGCAGCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAA
GATCACCACAAAGATCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGC
TTGCAGCGGCCAGGTCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGC
CACATCAGTCCGGACAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGA
GGAGGAGCACTGCCAGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGC
TGGAGGATGCCTGTCAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGA
GACGCCACGAAGAGACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCTAATC
CTCAAGGATATTCCTATACCATAGGCATAAGACATTTTTTTCATAGCCCT
AAGAACGTTTTTTTTTTTTTTAATTTTTTGGCCAGAATAAATCATTTGGA
ATGCAGAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD21346.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RA 1593 CG12708-RA 31..1592 1..1562 7810 100 Plus
CG12708-RB 1578 CG12708-RB 207..1578 188..1559 6860 100 Plus
CG15646.a 1699 CG15646.a 801..1336 693..1222 2445 97.3 Plus
CG15646.a 1699 CG15646.a 414..811 312..709 1870 97.9 Plus
CG12708-RB 1578 CG12708-RB 1..90 98..187 450 100 Plus
CG15646.a 1699 CG15646.a 1358..1411 1235..1288 195 90.7 Plus
CG15646.a 1699 CG15646.a 287..337 230..280 150 86.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15566208..15567585 186..1561 6630 98.9 Plus
chrX 22417052 chrX 15558020..15559017 1288..312 4160 95.4 Minus
chrX 22417052 chrX 15565347..15565533 1..187 905 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:08:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676362..15677738 186..1562 6885 100 Plus
X 23542271 X 15668171..15669168 1288..312 4160 95.4 Minus
X 23542271 X 15675501..15675687 1..187 935 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15684460..15685836 186..1562 6885 100 Plus
X 23527363 X 15676344..15676879 1222..693 2445 97.3 Minus
X 23527363 X 15676869..15677266 709..312 1870 97.9 Minus
X 23527363 X 15683599..15683785 1..187 935 100 Plus
X 23527363 X 15676269..15676322 1288..1235 195 90.7 Minus
X 23527363 X 15677343..15677393 280..230 150 86.2 Minus
Blast to na_te.dros performed 2019-03-15 18:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 818..917 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 784..914 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 818..917 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 818..903 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 817..883 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 798..899 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 775..883 120 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1098..1160 798..858 120 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2606..2877 646..920 115 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 827..928 113 59.2 Plus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 675..758 161..78 113 62.4 Minus

LD21346.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:16:47 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15565347..15565533 1..187 98 -> Plus
chrX 15566210..15567585 188..1561 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:55:53 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 1..1218 231..1448 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:22 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 1..1218 231..1448 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:58:19 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1218 231..1448 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:11 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 1..1218 231..1448 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:36 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1218 231..1448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:27 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:22 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:58:19 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:11 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 1..1561 1..1561 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:36 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 26..1586 1..1561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:47 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
X 15675501..15675687 1..187 100 -> Plus
X 15676364..15677737 188..1561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:47 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
X 15675501..15675687 1..187 100 -> Plus
X 15676364..15677737 188..1561 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:16:47 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
X 15675501..15675687 1..187 100 -> Plus
X 15676364..15677737 188..1561 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:58:19 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15569534..15569720 1..187 100 -> Plus
arm_X 15570397..15571770 188..1561 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:35 Download gff for LD21346.complete
Subject Subject Range Query Range Percent Splice Strand
X 15684462..15685835 188..1561 100   Plus
X 15683599..15683785 1..187 100 -> Plus

LD21346.pep Sequence

Translation from 230 to 1447

> LD21346.pep
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEES*

LD21346.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21917-PA 373 GF21917-PA 1..373 1..405 1003 62.7 Plus
Dana\GF22246-PA 366 GF22246-PA 1..361 1..404 859 58.6 Plus
Dana\GF21953-PA 368 GF21953-PA 1..266 1..253 205 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17895-PA 398 GG17895-PA 1..398 1..405 1508 91.7 Plus
Dere\GG19385-PA 673 GG19385-PA 281..668 1..404 1290 76.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17881-PA 526 GH17881-PA 39..526 1..405 750 47 Plus
Dgri\GH17637-PA 458 GH17637-PA 1..453 1..404 636 44.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PB 405 CG12708-PB 1..405 1..405 2099 100 Plus
CG12708-PA 405 CG12708-PA 1..405 1..405 2099 100 Plus
CG15646-PB 410 CG15646-PB 1..405 1..404 1670 81.3 Plus
CG15646-PA 410 CG15646-PA 1..405 1..404 1670 81.3 Plus
CG12496-PA 353 CG12496-PA 1..259 1..253 196 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16452-PA 447 GI16452-PA 1..447 1..405 622 45.3 Plus
Dmoj\GI16076-PA 448 GI16076-PA 1..443 1..404 564 43.9 Plus
Dmoj\GI15914-PA 342 GI15914-PA 65..252 75..253 163 32 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16526-PA 367 GL16526-PA 1..362 1..404 637 48.7 Plus
Dper\GL16476-PA 146 GL16476-PA 7..146 273..405 281 67.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11766-PA 421 GA11766-PA 22..421 1..405 963 62.2 Plus
Dpse\GA23080-PA 396 GA23080-PA 1..391 1..404 843 57.7 Plus
Dpse\GA11662-PA 378 GA11662-PA 106..268 107..253 155 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22540-PA 403 GM22540-PA 1..398 1..404 1440 81.3 Plus
Dsec\GM22561-PA 269 GM22561-PA 1..269 135..405 1395 97.8 Plus
Dsec\GM18881-PA 353 GM18881-PA 54..259 57..253 167 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17226-PA 269 GD17226-PA 1..269 135..405 1392 97.8 Plus
Dsim\GD15789-PA 531 GD15789-PA 135..526 1..404 1381 79.4 Plus
Dsim\GD16365-PA 353 GD16365-PA 54..259 57..253 167 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15851-PA 431 GJ15851-PA 1..431 1..405 780 51.9 Plus
Dvir\GJ15721-PA 419 GJ15721-PA 1..418 1..404 754 50.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16007-PA 369 GK16007-PA 1..364 1..404 565 43 Plus
Dwil\GK17157-PA 356 GK17157-PA 1..356 1..400 561 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17203-PA 399 GE17203-PA 1..399 1..405 1505 88.9 Plus
Dyak\GE16033-PA 502 GE16033-PA 99..497 1..404 1224 74.8 Plus

LD21346.hyp Sequence

Translation from 230 to 1447

> LD21346.hyp
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEES*

LD21346.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PB 405 CG12708-PB 1..405 1..405 2099 100 Plus
CG12708-PA 405 CG12708-PA 1..405 1..405 2099 100 Plus
CG15646-PB 410 CG15646-PB 1..405 1..404 1670 81.3 Plus
CG15646-PA 410 CG15646-PA 1..405 1..404 1670 81.3 Plus
CG12496-PA 353 CG12496-PA 1..259 1..253 196 29.8 Plus