BDGP Sequence Production Resources |
Search the DGRC for LD21346
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 213 |
Well: | 46 |
Vector: | pOT2 |
Associated Gene/Transcript | CG12708-RA |
Protein status: | LD21346.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1592 |
Gene | Date | Evidence |
---|---|---|
CG12708 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12708 | 2003-01-14 | Blastp of sequenced clone |
CG12708 | 2008-04-29 | Release 5.5 accounting |
CG12708 | 2008-08-15 | Release 5.9 accounting |
CG12708 | 2008-12-18 | 5.12 accounting |
1592 bp (1592 high quality bases) assembled on 2003-01-14
GenBank Submission: BT003269
> LD21346.complete GAACGCACGCAGTCGATCTTTGCCAGAAAAACGCGACGGTTGAAACGCAA CACTTGGCAAAAAAAAAGCACTACATATACAAACTACCAAATAATCAATT CTTAAAATAAATCCGCGAACCATTTATTTTATTTTTTTGCTGTTGGAAAT AAATATCAGTGCCGAAAAAAATAAACTACTGAAAAAGCACCCACTACAAA ACCGAAAAACTAAAACTTCAGACAAAGAAGATGCTCAAGTGGGCCGTCAA CCAGCCACGACCCTCGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCA GCGAGGCAGTCGGCTCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAA CTCAAGAGGAAGTCGATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGAC CTCCACGCCACTGCCGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCAC TGCTCAAGGACCTCAGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCA AGTGGCGCTAATGGGGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTT CGCCTGCACACTGCCCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCA TCATTCCTGGCTCCCTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGC TACTTCGAGAAGCCGCGTTACCTGGAGCAGAAGCCACTACCACATCCGCA TCCGCATCCAGCACCTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCC AGATGGGCGATGTGACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGC AACCGCAAGGTGCTGCCCAACGCCAGACAGCAACAGCACCAGCATCAGCA CCGCCAGCCCAGGCAGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGG TGCTCCGGAGCAGCCACGGACACGGGCACGGCCCCACCCAGACGCCATCG CCCACCTACCGCCCCGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTG GAAGTCGCCCTCGCGGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGC GGGAGGTGCGCTCCCCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAG CGGCATTCCCTGCAGCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAA GATCACCACAAAGATCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGC TTGCAGCGGCCAGGTCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGC CACATCAGTCCGGACAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGA GGAGGAGCACTGCCAGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGC TGGAGGATGCCTGTCAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGA GACGCCACGAAGAGACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCTAATC CTCAAGGATATTCCTATACCATAGGCATAAGACATTTTTTTCATAGCCCT AAGAACGTTTTTTTTTTTTTTAATTTTTTGGCCAGAATAAATCATTTGGA ATGCAGAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12708-RA | 1593 | CG12708-RA | 31..1592 | 1..1562 | 7810 | 100 | Plus |
CG12708-RB | 1578 | CG12708-RB | 207..1578 | 188..1559 | 6860 | 100 | Plus |
CG15646.a | 1699 | CG15646.a | 801..1336 | 693..1222 | 2445 | 97.3 | Plus |
CG15646.a | 1699 | CG15646.a | 414..811 | 312..709 | 1870 | 97.9 | Plus |
CG12708-RB | 1578 | CG12708-RB | 1..90 | 98..187 | 450 | 100 | Plus |
CG15646.a | 1699 | CG15646.a | 1358..1411 | 1235..1288 | 195 | 90.7 | Plus |
CG15646.a | 1699 | CG15646.a | 287..337 | 230..280 | 150 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15566208..15567585 | 186..1561 | 6630 | 98.9 | Plus |
chrX | 22417052 | chrX | 15558020..15559017 | 1288..312 | 4160 | 95.4 | Minus |
chrX | 22417052 | chrX | 15565347..15565533 | 1..187 | 905 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15684460..15685836 | 186..1562 | 6885 | 100 | Plus |
X | 23527363 | X | 15676344..15676879 | 1222..693 | 2445 | 97.3 | Minus |
X | 23527363 | X | 15676869..15677266 | 709..312 | 1870 | 97.9 | Minus |
X | 23527363 | X | 15683599..15683785 | 1..187 | 935 | 100 | Plus |
X | 23527363 | X | 15676269..15676322 | 1288..1235 | 195 | 90.7 | Minus |
X | 23527363 | X | 15677343..15677393 | 280..230 | 150 | 86.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 818..917 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 784..914 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 818..917 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 818..903 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 817..883 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 798..899 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 775..883 | 120 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 798..858 | 120 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2606..2877 | 646..920 | 115 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 827..928 | 113 | 59.2 | Plus |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 675..758 | 161..78 | 113 | 62.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15565347..15565533 | 1..187 | 98 | -> | Plus |
chrX | 15566210..15567585 | 188..1561 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RB | 1..1218 | 231..1448 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RB | 1..1218 | 231..1448 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1218 | 231..1448 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RB | 1..1218 | 231..1448 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1218 | 231..1448 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 1..1561 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12708-RA | 26..1586 | 1..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15675501..15675687 | 1..187 | 100 | -> | Plus |
X | 15676364..15677737 | 188..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15675501..15675687 | 1..187 | 100 | -> | Plus |
X | 15676364..15677737 | 188..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15675501..15675687 | 1..187 | 100 | -> | Plus |
X | 15676364..15677737 | 188..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15569534..15569720 | 1..187 | 100 | -> | Plus |
arm_X | 15570397..15571770 | 188..1561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15684462..15685835 | 188..1561 | 100 | Plus | |
X | 15683599..15683785 | 1..187 | 100 | -> | Plus |
Translation from 230 to 1447
> LD21346.pep MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS LVEES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21917-PA | 373 | GF21917-PA | 1..373 | 1..405 | 1003 | 62.7 | Plus |
Dana\GF22246-PA | 366 | GF22246-PA | 1..361 | 1..404 | 859 | 58.6 | Plus |
Dana\GF21953-PA | 368 | GF21953-PA | 1..266 | 1..253 | 205 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17895-PA | 398 | GG17895-PA | 1..398 | 1..405 | 1508 | 91.7 | Plus |
Dere\GG19385-PA | 673 | GG19385-PA | 281..668 | 1..404 | 1290 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17881-PA | 526 | GH17881-PA | 39..526 | 1..405 | 750 | 47 | Plus |
Dgri\GH17637-PA | 458 | GH17637-PA | 1..453 | 1..404 | 636 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12708-PB | 405 | CG12708-PB | 1..405 | 1..405 | 2099 | 100 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..405 | 1..405 | 2099 | 100 | Plus |
CG15646-PB | 410 | CG15646-PB | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG15646-PA | 410 | CG15646-PA | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG12496-PA | 353 | CG12496-PA | 1..259 | 1..253 | 196 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16452-PA | 447 | GI16452-PA | 1..447 | 1..405 | 622 | 45.3 | Plus |
Dmoj\GI16076-PA | 448 | GI16076-PA | 1..443 | 1..404 | 564 | 43.9 | Plus |
Dmoj\GI15914-PA | 342 | GI15914-PA | 65..252 | 75..253 | 163 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16526-PA | 367 | GL16526-PA | 1..362 | 1..404 | 637 | 48.7 | Plus |
Dper\GL16476-PA | 146 | GL16476-PA | 7..146 | 273..405 | 281 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11766-PA | 421 | GA11766-PA | 22..421 | 1..405 | 963 | 62.2 | Plus |
Dpse\GA23080-PA | 396 | GA23080-PA | 1..391 | 1..404 | 843 | 57.7 | Plus |
Dpse\GA11662-PA | 378 | GA11662-PA | 106..268 | 107..253 | 155 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22540-PA | 403 | GM22540-PA | 1..398 | 1..404 | 1440 | 81.3 | Plus |
Dsec\GM22561-PA | 269 | GM22561-PA | 1..269 | 135..405 | 1395 | 97.8 | Plus |
Dsec\GM18881-PA | 353 | GM18881-PA | 54..259 | 57..253 | 167 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17226-PA | 269 | GD17226-PA | 1..269 | 135..405 | 1392 | 97.8 | Plus |
Dsim\GD15789-PA | 531 | GD15789-PA | 135..526 | 1..404 | 1381 | 79.4 | Plus |
Dsim\GD16365-PA | 353 | GD16365-PA | 54..259 | 57..253 | 167 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15851-PA | 431 | GJ15851-PA | 1..431 | 1..405 | 780 | 51.9 | Plus |
Dvir\GJ15721-PA | 419 | GJ15721-PA | 1..418 | 1..404 | 754 | 50.7 | Plus |
Translation from 230 to 1447
> LD21346.hyp MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS LVEES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12708-PB | 405 | CG12708-PB | 1..405 | 1..405 | 2099 | 100 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..405 | 1..405 | 2099 | 100 | Plus |
CG15646-PB | 410 | CG15646-PB | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG15646-PA | 410 | CG15646-PA | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG12496-PA | 353 | CG12496-PA | 1..259 | 1..253 | 196 | 29.8 | Plus |